Wall clock time and date at job start Tue Mar 31 2020 18:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34889 * 117.00023 * 2 1 4 4 O 1.21624 * 119.99989 * 0.02562 * 3 2 1 5 5 C 1.46492 * 119.99943 * 179.97438 * 3 2 1 6 6 C 1.37999 * 126.26188 * 179.97438 * 5 3 2 7 7 C 1.39797 * 106.96788 * 180.02562 * 6 5 3 8 8 C 1.50700 * 126.07898 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.47140 * 90.02308 * 8 7 6 10 10 C 1.46902 * 110.99821 * 294.29956 * 9 8 7 11 11 C 1.53241 * 109.33876 * 172.75171 * 10 9 8 12 12 H 1.09000 * 109.63027 * 173.54599 * 11 10 9 13 13 C 1.53004 * 109.78715 * 294.02322 * 11 10 9 14 14 N 1.47073 * 108.52359 * 53.83075 * 11 10 9 15 15 C 1.36929 * 120.88487 * 128.83898 * 14 11 10 16 16 H 1.08004 * 120.00336 * 307.71779 * 15 14 11 17 17 C 1.38820 * 120.00201 * 127.71198 * 15 14 11 18 18 N 1.31624 * 119.99874 * 156.43290 * 17 15 14 19 19 Si 1.86795 * 119.99979 * 336.43298 * 17 15 14 20 20 H 1.48497 * 109.47119 * 95.27185 * 19 17 15 21 21 H 1.48503 * 109.46974 * 215.26839 * 19 17 15 22 22 H 1.48500 * 109.47170 * 335.27026 * 19 17 15 23 23 C 1.47089 * 118.23691 * 308.81337 * 14 11 10 24 24 H 1.09004 * 109.62923 * 291.47562 * 23 14 11 25 25 C 1.52997 * 109.78857 * 170.99031 * 23 14 11 26 26 C 1.46906 * 110.99791 * 170.00214 * 9 8 7 27 27 C 1.35488 * 107.84085 * 0.26232 * 7 6 5 28 28 N 1.34962 * 108.98891 * 359.56613 * 27 7 6 29 29 C 1.46492 * 125.63736 * 180.19199 * 28 27 7 30 30 H 1.08995 * 109.47399 * 299.99625 * 1 2 3 31 31 H 1.09003 * 109.47253 * 59.99482 * 1 2 3 32 32 H 1.09000 * 109.47569 * 179.97438 * 1 2 3 33 33 H 1.08003 * 126.51666 * 0.03241 * 6 5 3 34 34 H 1.09004 * 109.46767 * 210.02334 * 8 7 6 35 35 H 1.09001 * 109.46747 * 330.01891 * 8 7 6 36 36 H 1.09004 * 109.49495 * 292.70880 * 10 9 8 37 37 H 1.08996 * 109.49450 * 52.79341 * 10 9 8 38 38 H 1.09003 * 109.47338 * 179.12665 * 13 11 10 39 39 H 1.09000 * 109.47263 * 299.12928 * 13 11 10 40 40 H 1.08999 * 109.47137 * 59.12981 * 13 11 10 41 41 H 0.96995 * 119.99998 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.47153 * 307.57235 * 25 23 14 43 43 H 1.08997 * 109.47267 * 67.57064 * 25 23 14 44 44 H 1.08999 * 109.47118 * 187.56836 * 25 23 14 45 45 H 1.08998 * 109.49037 * 307.21044 * 26 9 8 46 46 H 1.09000 * 109.49335 * 67.26849 * 26 9 8 47 47 H 1.08005 * 125.50444 * 179.72791 * 27 7 6 48 48 H 1.09001 * 109.47360 * 270.28672 * 29 28 27 49 49 H 1.08997 * 109.47288 * 30.28683 * 29 28 27 50 50 H 1.09000 * 109.47067 * 150.28675 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 0.0005 5 6 3.5273 1.2785 0.0006 6 6 4.2842 2.4324 0.0001 7 6 5.6260 2.0402 0.0004 8 6 6.8196 2.9602 0.0006 9 7 7.2075 3.2587 1.3856 10 6 6.1620 4.0307 2.0704 11 6 6.5200 4.1650 3.5543 12 1 5.8097 4.8315 4.0435 13 6 6.4789 2.7898 4.2236 14 7 7.8759 4.7251 3.6589 15 6 8.1279 5.8127 4.4519 16 1 7.5342 6.7085 4.3446 17 6 9.1464 5.7638 5.3938 18 7 9.7030 6.8780 5.8196 19 14 9.7271 4.1169 6.0570 20 1 10.9098 3.6610 5.2834 21 1 10.0975 4.2623 7.4878 22 1 8.6356 3.1184 5.9272 23 6 8.9543 4.0858 2.8896 24 1 9.1599 3.0969 3.2995 25 6 10.2190 4.9439 2.9589 26 6 8.5004 3.9546 1.4318 27 6 5.6626 0.6858 -0.0050 28 7 4.3987 0.2123 0.0011 29 6 4.0171 -1.2020 0.0021 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9109 3.4459 -0.0002 34 1 7.6506 2.4773 -0.5135 35 1 6.5639 3.8870 -0.5130 36 1 6.0894 5.0219 1.6226 37 1 5.2063 3.5159 1.9720 38 1 6.7494 2.8890 5.2749 39 1 5.4732 2.3771 4.1446 40 1 7.1850 2.1233 3.7282 41 1 10.4149 6.8439 6.4775 42 1 9.9806 5.9667 2.6668 43 1 10.6068 4.9380 3.9775 44 1 10.9707 4.5385 2.2816 45 1 9.2405 3.3846 0.8703 46 1 8.3954 4.9467 0.9926 47 1 6.5584 0.0825 -0.0104 48 1 3.9222 -1.5535 -1.0253 49 1 4.7817 -1.7843 0.5161 50 1 3.0633 -1.3206 0.5162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119450296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:37 Heat of formation + Delta-G solvation = -12.172683 kcal Electronic energy + Delta-G solvation = -30417.256491 eV Core-core repulsion = 26446.108004 eV Total energy + Delta-G solvation = -3971.148487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.54068 -40.96778 -40.10364 -37.55348 -36.71946 -34.46071 -33.97915 -33.27207 -31.22607 -30.10102 -28.82149 -28.17678 -27.53359 -26.68933 -25.42147 -24.05263 -23.28122 -22.60865 -21.00275 -20.72704 -20.16114 -18.54158 -18.37302 -18.03994 -17.55752 -17.13665 -16.61191 -16.37952 -16.22119 -15.84586 -15.63279 -15.53411 -15.03041 -14.94258 -14.50340 -14.43127 -14.32250 -14.18495 -13.76861 -13.66953 -13.62159 -13.26281 -13.11925 -12.99638 -12.90381 -12.77335 -12.56189 -12.45173 -12.28688 -12.15772 -12.06653 -11.87535 -11.85567 -11.68372 -11.62239 -11.26059 -11.17080 -10.43404 -9.63952 -9.25938 -9.07836 -8.33586 -8.15756 -5.67748 0.17930 1.35796 1.44567 1.57673 1.59163 1.63197 1.94158 2.05495 2.47350 3.07870 3.21942 3.45386 3.71273 3.92895 4.13945 4.22418 4.26053 4.28472 4.31046 4.31512 4.39459 4.50339 4.50865 4.56267 4.57979 4.65664 4.67460 4.71442 4.81365 4.84147 4.88714 4.91757 4.93594 4.96282 4.99448 5.05406 5.19268 5.22637 5.30758 5.36281 5.40516 5.58538 5.66857 5.71376 5.95636 6.01983 6.27195 6.29900 6.32452 6.39009 6.65096 7.16049 7.67743 8.27471 9.00740 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002941 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.349825 B = 9517.062586 C = 9803.351648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.539 3.461 4 O -0.540 6.540 5 C -0.077 4.077 6 C -0.101 4.101 7 C -0.181 4.181 8 C 0.130 3.870 9 N -0.525 5.525 10 C 0.066 3.934 11 C 0.159 3.841 12 H 0.047 0.953 13 C -0.137 4.137 14 N -0.606 5.606 15 C -0.265 4.265 16 H 0.020 0.980 17 C 0.018 3.982 18 N -0.938 5.938 19 Si 0.922 3.078 20 H -0.266 1.266 21 H -0.313 1.313 22 H -0.251 1.251 23 C 0.167 3.833 24 H 0.031 0.969 25 C -0.139 4.139 26 C 0.058 3.942 27 C 0.075 3.925 28 N -0.413 5.413 29 C 0.061 3.939 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.029 0.971 36 H 0.009 0.991 37 H 0.081 0.919 38 H 0.025 0.975 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.018 0.982 47 H 0.206 0.794 48 H 0.093 0.907 49 H 0.112 0.888 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 -22.417 -16.477 30.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.386 3.614 4 O -0.431 6.431 5 C -0.187 4.187 6 C -0.128 4.128 7 C -0.187 4.187 8 C 0.002 3.998 9 N -0.249 5.249 10 C -0.063 4.063 11 C 0.053 3.947 12 H 0.065 0.935 13 C -0.196 4.196 14 N -0.331 5.331 15 C -0.395 4.395 16 H 0.038 0.962 17 C -0.181 4.181 18 N -0.580 5.580 19 Si 0.749 3.251 20 H -0.192 1.192 21 H -0.241 1.241 22 H -0.175 1.175 23 C 0.062 3.938 24 H 0.049 0.951 25 C -0.197 4.197 26 C -0.071 4.071 27 C -0.064 4.064 28 N -0.086 5.086 29 C -0.079 4.079 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.027 0.973 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.116 0.884 46 H 0.036 0.964 47 H 0.223 0.777 48 H 0.111 0.889 49 H 0.131 0.869 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.582 -22.882 -16.140 30.302 hybrid contribution -0.129 1.205 0.573 1.341 sum -11.710 -21.677 -15.566 29.143 Atomic orbital electron populations 1.23578 0.74332 1.05957 1.02481 1.86581 1.25275 1.31181 1.84359 1.19975 0.87292 0.81840 0.72254 1.90887 1.66321 1.37100 1.48753 1.19195 0.86504 0.88758 1.24199 1.21290 0.93015 0.96524 1.01977 1.19250 0.93165 0.94009 1.12288 1.20403 0.94968 0.96098 0.88291 1.61935 1.02089 1.45426 1.15472 1.22317 0.95213 0.94372 0.94411 1.20865 0.86722 0.93519 0.93587 0.93509 1.21984 1.00854 0.97940 0.98776 1.44520 1.04486 1.33175 1.50957 1.18231 1.17265 0.90900 1.13063 0.96220 1.26297 0.97511 0.98532 0.95741 1.70032 1.25776 1.29136 1.33092 0.86334 0.79270 0.83389 0.76063 1.19171 1.24132 1.17514 1.20759 0.88263 0.94118 0.90659 0.95127 1.21949 0.96891 0.99713 1.01131 1.22499 0.91598 0.96156 0.96854 1.22253 0.87596 0.94433 1.02123 1.44064 1.05275 1.07171 1.52121 1.22555 1.04151 0.75927 1.05239 0.92312 0.91987 0.84332 0.85116 0.87846 0.95227 0.97287 0.90070 0.95538 0.92456 0.92241 0.92829 0.94159 0.94079 0.90916 0.88402 0.96382 0.77681 0.88855 0.86947 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -6.41 8.00 -58.03 -0.46 -6.87 16 3 C 0.54 13.48 7.92 69.97 0.55 14.03 16 4 O -0.54 -16.97 16.68 19.43 0.32 -16.65 16 5 C -0.08 -1.85 6.89 40.32 0.28 -1.57 16 6 C -0.10 -2.64 9.08 22.59 0.21 -2.43 16 7 C -0.18 -4.09 4.96 -20.12 -0.10 -4.19 16 8 C 0.13 3.06 5.45 85.56 0.47 3.53 16 9 N -0.53 -15.95 4.12 -899.80 -3.71 -19.66 16 10 C 0.07 2.34 4.84 86.38 0.42 2.76 16 11 C 0.16 6.67 3.30 44.96 0.15 6.82 16 12 H 0.05 2.11 7.95 -2.39 -0.02 2.09 16 13 C -0.14 -5.20 9.10 71.98 0.66 -4.54 16 14 N -0.61 -28.97 1.97 -650.63 -1.28 -30.25 16 15 C -0.26 -15.22 8.73 84.04 0.73 -14.49 16 16 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 17 C 0.02 1.04 3.87 84.86 0.33 1.36 16 18 N -0.94 -58.12 13.97 21.65 0.30 -57.82 16 19 Si 0.92 45.88 24.77 68.60 1.70 47.58 16 20 H -0.27 -12.43 6.45 99.48 0.64 -11.79 16 21 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 22 H -0.25 -12.11 5.55 99.48 0.55 -11.56 16 23 C 0.17 6.90 2.06 44.96 0.09 7.00 16 24 H 0.03 1.29 6.94 -2.39 -0.02 1.27 16 25 C -0.14 -6.01 7.83 71.98 0.56 -5.44 16 26 C 0.06 1.92 4.91 86.38 0.42 2.34 16 27 C 0.08 1.27 11.26 83.58 0.94 2.21 16 28 N -0.41 -7.12 3.15 -534.86 -1.68 -8.81 16 29 C 0.06 0.54 10.56 127.77 1.35 1.89 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.10 1.90 7.97 -2.39 -0.02 1.88 16 35 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 36 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.08 2.69 5.91 -2.39 -0.01 2.68 16 38 H 0.03 1.10 6.73 -2.39 -0.02 1.08 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.20 7.10 -2.39 -0.02 2.19 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.04 1.92 7.71 -2.38 -0.02 1.90 16 43 H 0.04 1.98 3.33 -2.39 -0.01 1.97 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 46 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.21 2.03 8.06 -2.91 -0.02 2.00 16 48 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.09 0.94 6.15 -2.39 -0.01 0.92 16 Total: -1.00 -74.97 384.73 4.15 -70.82 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.70 Total: 10.83 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 8.26 Total: 10.83 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.37 Total: -116.54 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.14 Total: -23.52 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.70 Total: 47.58 kcal Total: -74.97 4.15 -70.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119450296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.649 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds