Wall clock time and date at job start Tue Mar 31 2020 19:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47020 * 2 1 4 4 O 1.42898 * 109.46962 * 119.99709 * 2 1 3 5 5 C 1.35497 * 117.00271 * 89.99807 * 4 2 1 6 6 C 1.39164 * 119.53268 * 179.97438 * 5 4 2 7 7 C 1.37955 * 119.26749 * 179.97438 * 6 5 4 8 8 C 1.40277 * 118.35724 * 0.02562 * 7 6 5 9 9 C 1.47614 * 120.49710 * 180.02562 * 8 7 6 10 10 O 1.21578 * 120.00482 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99657 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99521 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47568 * 34.99606 * 12 11 9 14 14 C 1.53007 * 109.46714 * 274.99404 * 12 11 9 15 15 C 1.53004 * 109.46779 * 154.99840 * 12 11 9 16 16 C 1.52991 * 109.47088 * 294.99329 * 15 12 11 17 17 H 1.09000 * 109.47713 * 305.00644 * 16 15 12 18 18 C 1.53001 * 109.47378 * 185.00165 * 16 15 12 19 19 N 1.46507 * 109.46854 * 65.00556 * 16 15 12 20 20 C 1.36941 * 119.99659 * 205.00095 * 19 16 15 21 21 H 1.08000 * 119.99996 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99883 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99655 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00078 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47106 * 59.99984 * 24 22 20 26 26 H 1.48507 * 109.47016 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46925 * 299.99640 * 24 22 20 28 28 C 1.39533 * 119.00220 * 359.97438 * 8 7 6 29 29 N 1.31659 * 120.62634 * 0.02562 * 28 8 7 30 30 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47011 * 300.00118 * 1 2 3 32 32 H 1.09003 * 109.47047 * 60.00304 * 1 2 3 33 33 H 1.08995 * 109.47297 * 239.99606 * 2 1 3 34 34 H 1.09002 * 109.47261 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46962 * 299.99748 * 3 2 1 36 36 H 1.08995 * 109.47407 * 59.99673 * 3 2 1 37 37 H 1.08007 * 120.36509 * 0.25532 * 6 5 4 38 38 H 1.08004 * 120.81934 * 180.02562 * 7 6 5 39 39 H 0.96994 * 120.00432 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.46533 * 180.02562 * 14 12 11 41 41 H 1.08995 * 109.47527 * 299.99947 * 14 12 11 42 42 H 1.08992 * 109.46908 * 60.00541 * 14 12 11 43 43 H 1.08998 * 109.46912 * 54.99995 * 15 12 11 44 44 H 1.09004 * 109.46687 * 174.99571 * 15 12 11 45 45 H 1.08999 * 109.47010 * 59.99653 * 18 16 15 46 46 H 1.08994 * 109.47570 * 180.02562 * 18 16 15 47 47 H 1.09003 * 109.46822 * 300.00427 * 18 16 15 48 48 H 0.96994 * 119.99998 * 24.99924 * 19 16 15 49 49 H 0.97003 * 119.99475 * 180.02562 * 23 22 20 50 50 H 1.08001 * 119.68150 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2113 -2.0091 1.0656 6 6 2.6752 -2.7176 2.1699 7 6 2.8816 -4.0772 2.0609 8 6 2.6135 -4.6953 0.8305 9 6 2.8171 -6.1475 0.6615 10 8 3.2205 -6.8173 1.5925 11 7 2.5559 -6.7310 -0.5250 12 6 2.7585 -8.1722 -0.6929 13 1 2.5089 -8.6849 0.2360 14 6 4.2220 -8.4434 -1.0478 15 6 1.8573 -8.6863 -1.8174 16 6 0.3915 -8.5288 -1.4085 17 1 0.2245 -9.0289 -0.4545 18 6 -0.5063 -9.1556 -2.4771 19 7 0.0719 -7.1051 -1.2760 20 6 -0.9538 -6.7067 -0.4607 21 1 -1.5273 -7.4420 0.0842 22 6 -1.2570 -5.3580 -0.3356 23 7 -0.5584 -4.4620 -1.0001 24 14 -2.6565 -4.8145 0.7759 25 1 -2.3809 -5.2510 2.1683 26 1 -2.7745 -3.3347 0.7357 27 1 -3.9263 -5.4257 0.3077 28 6 2.1504 -3.9169 -0.2309 29 7 1.9674 -2.6215 -0.0828 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.8673 -2.2093 3.1033 38 1 3.2406 -4.6516 2.9021 39 1 2.2337 -6.1968 -1.2677 40 1 4.3726 -9.5157 -1.1731 41 1 4.4716 -7.9308 -1.9767 42 1 4.8639 -8.0772 -0.2467 43 1 2.0453 -8.1124 -2.7247 44 1 2.0718 -9.7390 -2.0023 45 1 -0.2685 -10.2148 -2.5758 46 1 -1.5506 -9.0430 -2.1861 47 1 -0.3393 -8.6554 -3.4310 48 1 0.5867 -6.4449 -1.7656 49 1 -0.7700 -3.5194 -0.9123 50 1 1.9401 -4.3814 -1.1829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134532687.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:59 Heat of formation + Delta-G solvation = -32.196125 kcal Electronic energy + Delta-G solvation = -30897.816444 eV Core-core repulsion = 26925.799676 eV Total energy + Delta-G solvation = -3972.016768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.35558 -39.21472 -37.66787 -36.65237 -34.18325 -33.13436 -32.33771 -31.94292 -30.99789 -29.33736 -28.45066 -27.13355 -26.34167 -23.95212 -23.73099 -23.42151 -21.42260 -20.64780 -20.27964 -19.68115 -18.17012 -17.22812 -17.10888 -16.50995 -15.54869 -15.39137 -14.83574 -14.50014 -14.36561 -14.14097 -14.05424 -13.76948 -13.65880 -13.41101 -12.95433 -12.82341 -12.73381 -12.54486 -12.23115 -12.19248 -12.15082 -12.08971 -11.86065 -11.74175 -11.67356 -11.64844 -11.03103 -10.84568 -10.75690 -10.71150 -10.50590 -10.37566 -10.28691 -9.93542 -9.71209 -9.49218 -9.42005 -8.98331 -8.88232 -8.39149 -7.98723 -6.95345 -5.82917 -3.06295 1.34769 1.77958 3.28892 3.41302 3.46142 3.48855 3.52693 3.83780 4.46594 4.57258 4.77231 5.00447 5.08896 5.11518 5.30893 5.37398 5.42272 5.43341 5.46238 5.50379 5.55204 5.62241 5.65257 5.68533 5.81230 5.87552 5.91546 5.96428 5.98592 6.00528 6.10926 6.13545 6.20998 6.23421 6.32687 6.36974 6.43257 6.46900 6.55645 6.58673 6.66587 6.84274 6.89255 7.04010 7.17784 7.61897 7.68090 8.19296 8.37458 8.38504 8.91370 9.48590 9.99962 10.35994 11.39391 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.004758 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.553019 B = 5883.963575 C = 7371.162996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 C -0.148 4.148 4 O -0.306 6.306 5 C 0.337 3.663 6 C -0.222 4.222 7 C 0.012 3.988 8 C -0.232 4.232 9 C 0.582 3.418 10 O -0.565 6.565 11 N -0.694 5.694 12 C 0.151 3.849 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.048 0.952 18 C -0.163 4.163 19 N -0.715 5.715 20 C -0.224 4.224 21 H 0.066 0.934 22 C -0.007 4.007 23 N -0.923 5.923 24 Si 0.896 3.104 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.289 1.289 28 C 0.241 3.759 29 N -0.534 5.534 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.402 0.598 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.376 0.624 49 H 0.259 0.741 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 3.020 -1.906 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.026 3.974 3 C -0.206 4.206 4 O -0.213 6.213 5 C 0.158 3.842 6 C -0.243 4.243 7 C -0.014 4.014 8 C -0.237 4.237 9 C 0.370 3.630 10 O -0.446 6.446 11 N -0.347 5.347 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.221 4.221 15 C -0.173 4.173 16 C 0.059 3.941 17 H 0.066 0.934 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.355 4.355 21 H 0.084 0.916 22 C -0.203 4.203 23 N -0.571 5.571 24 Si 0.728 3.272 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.082 3.918 29 N -0.256 5.256 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.240 0.760 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.211 0.789 49 H 0.069 0.931 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.242 3.249 -1.644 9.010 hybrid contribution -1.038 0.327 0.660 1.272 sum 7.204 3.576 -0.984 8.103 Atomic orbital electron populations 1.22207 0.94846 1.03757 1.01827 1.22294 0.94505 0.92240 0.88347 1.21897 1.01629 0.94398 1.02634 1.86203 1.79844 1.16542 1.38743 1.20037 0.89581 0.84342 0.90200 1.20793 1.10501 0.94135 0.98883 1.21338 0.90826 0.92745 0.96474 1.20715 1.11183 0.95065 0.96784 1.17733 0.76295 0.86515 0.82451 1.90675 1.48402 1.65086 1.40440 1.45860 1.66434 1.08730 1.13629 1.20805 0.93552 0.81614 0.99453 0.89832 1.22210 0.97080 1.01249 1.01536 1.22217 0.96360 1.01000 0.97689 1.20290 0.90394 0.87276 0.96120 0.93382 1.22414 1.01459 0.98167 1.00284 1.42436 1.38817 1.00283 1.54246 1.19133 1.07197 0.91177 1.18014 0.91632 1.24502 0.99550 0.95789 1.00481 1.69422 1.41620 1.00803 1.45251 0.86430 0.82607 0.77387 0.80799 1.21632 1.21834 1.21596 1.22630 0.84055 0.86673 0.98413 1.67268 1.21469 1.13079 1.23823 0.91076 0.92634 0.91398 0.88929 0.92095 0.90733 0.91971 0.84664 0.83957 0.75996 0.92146 0.92808 0.92357 0.91732 0.90765 0.94591 0.92897 0.93607 0.78927 0.93091 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.53 37.16 0.35 -2.14 16 2 C 0.08 1.19 3.10 -26.73 -0.08 1.10 16 3 C -0.15 -1.61 9.56 37.16 0.36 -1.25 16 4 O -0.31 -5.06 9.75 -18.18 -0.18 -5.24 16 5 C 0.34 6.10 7.46 -16.96 -0.13 5.97 16 6 C -0.22 -3.74 10.02 -39.34 -0.39 -4.14 16 7 C 0.01 0.21 9.70 -38.92 -0.38 -0.16 16 8 C -0.23 -4.48 5.89 -104.82 -0.62 -5.10 16 9 C 0.58 11.59 7.74 -12.43 -0.10 11.50 16 10 O -0.57 -12.43 16.08 5.30 0.09 -12.35 16 11 N -0.69 -12.19 3.75 -54.82 -0.21 -12.40 16 12 C 0.15 2.35 2.58 -67.92 -0.17 2.18 16 13 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 14 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 15 C -0.13 -1.93 4.43 -26.73 -0.12 -2.04 16 16 C 0.17 3.02 2.89 -67.93 -0.20 2.83 16 17 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 18 C -0.16 -2.71 9.49 37.16 0.35 -2.35 16 19 N -0.71 -15.40 3.84 -53.42 -0.21 -15.60 16 20 C -0.22 -5.66 9.93 -15.06 -0.15 -5.81 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -23.40 10.74 55.49 0.60 -22.81 16 24 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 C 0.24 4.64 9.04 -17.14 -0.15 4.48 16 29 N -0.53 -10.16 8.61 -12.96 -0.11 -10.27 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.42 6.97 -51.93 -0.36 1.06 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.14 2.35 7.73 -52.48 -0.41 1.94 16 39 H 0.40 7.01 4.56 -40.82 -0.19 6.83 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.38 8.17 5.70 -40.82 -0.23 7.94 16 49 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 50 H 0.17 3.27 5.85 -52.49 -0.31 2.96 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -28.11 404.65 -8.31 -36.42 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -8.19 Total: 16.13 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.17 Total: 3.01 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.07 Total: -61.08 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.09 Total: -17.59 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.11 -8.31 -36.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134532687.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.223 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds