Wall clock time and date at job start Tue Mar 31 2020 19:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47020 * 2 1 4 4 O 1.42898 * 109.46962 * 119.99709 * 2 1 3 5 5 C 1.35497 * 117.00271 * 89.99807 * 4 2 1 6 6 C 1.39164 * 119.53268 * 179.97438 * 5 4 2 7 7 C 1.37955 * 119.26749 * 179.97438 * 6 5 4 8 8 C 1.40277 * 118.35724 * 0.02562 * 7 6 5 9 9 C 1.47614 * 120.49710 * 180.02562 * 8 7 6 10 10 O 1.21578 * 120.00482 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99657 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99521 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47568 * 34.99606 * 12 11 9 14 14 C 1.53007 * 109.46714 * 274.99404 * 12 11 9 15 15 C 1.53004 * 109.46779 * 154.99840 * 12 11 9 16 16 C 1.52991 * 109.47088 * 294.99329 * 15 12 11 17 17 H 1.09000 * 109.47713 * 305.00644 * 16 15 12 18 18 C 1.53001 * 109.47378 * 185.00165 * 16 15 12 19 19 N 1.46507 * 109.46854 * 65.00556 * 16 15 12 20 20 C 1.36941 * 119.99659 * 205.00095 * 19 16 15 21 21 H 1.08000 * 119.99996 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99883 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99655 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00078 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47106 * 59.99984 * 24 22 20 26 26 H 1.48507 * 109.47016 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46925 * 299.99640 * 24 22 20 28 28 C 1.39533 * 119.00220 * 359.97438 * 8 7 6 29 29 N 1.31659 * 120.62634 * 0.02562 * 28 8 7 30 30 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47011 * 300.00118 * 1 2 3 32 32 H 1.09003 * 109.47047 * 60.00304 * 1 2 3 33 33 H 1.08995 * 109.47297 * 239.99606 * 2 1 3 34 34 H 1.09002 * 109.47261 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46962 * 299.99748 * 3 2 1 36 36 H 1.08995 * 109.47407 * 59.99673 * 3 2 1 37 37 H 1.08007 * 120.36509 * 0.25532 * 6 5 4 38 38 H 1.08004 * 120.81934 * 180.02562 * 7 6 5 39 39 H 0.96994 * 120.00432 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.46533 * 180.02562 * 14 12 11 41 41 H 1.08995 * 109.47527 * 299.99947 * 14 12 11 42 42 H 1.08992 * 109.46908 * 60.00541 * 14 12 11 43 43 H 1.08998 * 109.46912 * 54.99995 * 15 12 11 44 44 H 1.09004 * 109.46687 * 174.99571 * 15 12 11 45 45 H 1.08999 * 109.47010 * 59.99653 * 18 16 15 46 46 H 1.08994 * 109.47570 * 180.02562 * 18 16 15 47 47 H 1.09003 * 109.46822 * 300.00427 * 18 16 15 48 48 H 0.96994 * 119.99998 * 24.99924 * 19 16 15 49 49 H 0.97003 * 119.99475 * 180.02562 * 23 22 20 50 50 H 1.08001 * 119.68150 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2113 -2.0091 1.0656 6 6 2.6752 -2.7176 2.1699 7 6 2.8816 -4.0772 2.0609 8 6 2.6135 -4.6953 0.8305 9 6 2.8171 -6.1475 0.6615 10 8 3.2205 -6.8173 1.5925 11 7 2.5559 -6.7310 -0.5250 12 6 2.7585 -8.1722 -0.6929 13 1 2.5089 -8.6849 0.2360 14 6 4.2220 -8.4434 -1.0478 15 6 1.8573 -8.6863 -1.8174 16 6 0.3915 -8.5288 -1.4085 17 1 0.2245 -9.0289 -0.4545 18 6 -0.5063 -9.1556 -2.4771 19 7 0.0719 -7.1051 -1.2760 20 6 -0.9538 -6.7067 -0.4607 21 1 -1.5273 -7.4420 0.0842 22 6 -1.2570 -5.3580 -0.3356 23 7 -0.5584 -4.4620 -1.0001 24 14 -2.6565 -4.8145 0.7759 25 1 -2.3809 -5.2510 2.1683 26 1 -2.7745 -3.3347 0.7357 27 1 -3.9263 -5.4257 0.3077 28 6 2.1504 -3.9169 -0.2309 29 7 1.9674 -2.6215 -0.0828 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.8673 -2.2093 3.1033 38 1 3.2406 -4.6516 2.9021 39 1 2.2337 -6.1968 -1.2677 40 1 4.3726 -9.5157 -1.1731 41 1 4.4716 -7.9308 -1.9767 42 1 4.8639 -8.0772 -0.2467 43 1 2.0453 -8.1124 -2.7247 44 1 2.0718 -9.7390 -2.0023 45 1 -0.2685 -10.2148 -2.5758 46 1 -1.5506 -9.0430 -2.1861 47 1 -0.3393 -8.6554 -3.4310 48 1 0.5867 -6.4449 -1.7656 49 1 -0.7700 -3.5194 -0.9123 50 1 1.9401 -4.3814 -1.1829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134532687.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:59 Heat of formation + Delta-G solvation = -48.806672 kcal Electronic energy + Delta-G solvation = -30898.536732 eV Core-core repulsion = 26925.799676 eV Total energy + Delta-G solvation = -3972.737056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76531 -40.63655 -39.00672 -38.16232 -35.76270 -34.37837 -33.95113 -33.38849 -32.45568 -30.82295 -29.99854 -28.16894 -27.56529 -25.54668 -25.34080 -24.87574 -22.71548 -21.92762 -21.67504 -21.16230 -19.50921 -19.06336 -18.56625 -17.91028 -16.97208 -16.69797 -16.56084 -15.98985 -15.76472 -15.54720 -15.51105 -15.33277 -15.14671 -14.73814 -14.29636 -14.20742 -14.10276 -13.87709 -13.62699 -13.52518 -13.28855 -13.25047 -13.18165 -13.13470 -12.89889 -12.83416 -12.76281 -12.61583 -12.26157 -12.19310 -11.88869 -11.70515 -11.68080 -11.57749 -11.38274 -11.01211 -10.89254 -10.81478 -10.35700 -9.86843 -9.40673 -8.75641 -7.81784 -5.01253 -0.11514 0.35870 1.39736 1.44446 1.45354 2.00328 2.03820 2.44240 2.59239 2.99935 3.37739 3.52516 3.80392 3.91887 3.95724 4.03634 4.04979 4.06334 4.11059 4.20704 4.23450 4.31385 4.42000 4.60791 4.66265 4.70144 4.73595 4.81408 4.85022 4.87257 4.89371 4.91081 4.95491 4.98244 5.10968 5.16286 5.18118 5.20537 5.25178 5.28274 5.41111 5.45650 5.49877 5.63932 5.66570 5.80316 6.27075 6.40411 6.71755 6.93619 7.40463 7.50009 8.20371 8.48384 9.37060 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.004758 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.553019 B = 5883.963575 C = 7371.162996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 C -0.140 4.140 4 O -0.307 6.307 5 C 0.327 3.673 6 C -0.215 4.215 7 C 0.006 3.994 8 C -0.248 4.248 9 C 0.575 3.425 10 O -0.593 6.593 11 N -0.687 5.687 12 C 0.146 3.854 13 H 0.058 0.942 14 C -0.152 4.152 15 C -0.120 4.120 16 C 0.162 3.838 17 H 0.029 0.971 18 C -0.153 4.153 19 N -0.717 5.717 20 C -0.224 4.224 21 H 0.052 0.948 22 C -0.041 4.041 23 N -0.919 5.919 24 Si 0.927 3.073 25 H -0.301 1.301 26 H -0.301 1.301 27 H -0.288 1.288 28 C 0.238 3.762 29 N -0.544 5.544 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.402 0.598 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.048 0.952 48 H 0.375 0.625 49 H 0.249 0.751 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.477 3.139 -2.848 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 C -0.196 4.196 4 O -0.214 6.214 5 C 0.148 3.852 6 C -0.235 4.235 7 C -0.020 4.020 8 C -0.254 4.254 9 C 0.364 3.636 10 O -0.477 6.477 11 N -0.338 5.338 12 C 0.042 3.958 13 H 0.076 0.924 14 C -0.210 4.210 15 C -0.158 4.158 16 C 0.054 3.946 17 H 0.047 0.953 18 C -0.213 4.213 19 N -0.360 5.360 20 C -0.357 4.357 21 H 0.070 0.930 22 C -0.236 4.236 23 N -0.569 5.569 24 Si 0.760 3.240 25 H -0.229 1.229 26 H -0.228 1.228 27 H -0.215 1.215 28 C 0.080 3.920 29 N -0.267 5.267 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.241 0.759 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.067 0.933 48 H 0.209 0.791 49 H 0.059 0.941 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.324 3.347 -2.618 10.247 hybrid contribution -1.382 0.293 0.966 1.711 sum 7.942 3.640 -1.652 8.892 Atomic orbital electron populations 1.22174 0.95285 1.01393 1.03309 1.22538 0.94217 0.94047 0.87174 1.21881 1.02006 0.91678 1.04084 1.86213 1.79698 1.15691 1.39824 1.20331 0.89468 0.85110 0.90261 1.21102 1.09017 0.93752 0.99644 1.21547 0.90738 0.93355 0.96321 1.20843 1.11986 0.95001 0.97576 1.17917 0.76188 0.86784 0.82753 1.90645 1.50013 1.65680 1.41351 1.45917 1.65323 1.09678 1.12861 1.20980 0.95815 0.80113 0.98930 0.92391 1.22110 0.94319 1.03137 1.01442 1.22138 0.93078 1.03346 0.97281 1.20491 0.93230 0.85026 0.95901 0.95328 1.22266 0.99429 1.00149 0.99468 1.42464 1.37935 1.02012 1.53621 1.19144 1.07751 0.90766 1.18026 0.93003 1.24808 1.00767 0.96320 1.01684 1.69487 1.41804 0.99984 1.45584 0.85944 0.82028 0.76397 0.79586 1.22934 1.22784 1.21507 1.22505 0.84418 0.86910 0.98200 1.67247 1.21760 1.12974 1.24730 0.95203 0.91822 0.89281 0.90195 0.91477 0.88518 0.91251 0.81760 0.82894 0.75913 0.89493 0.91273 0.94190 0.90396 0.87230 0.91326 0.95388 0.93272 0.79065 0.94131 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.53 71.98 0.69 -4.09 16 2 C 0.08 2.12 3.10 30.60 0.09 2.21 16 3 C -0.14 -2.69 9.56 71.98 0.69 -2.00 16 4 O -0.31 -9.90 9.75 -87.98 -0.86 -10.76 16 5 C 0.33 11.76 7.46 84.83 0.63 12.39 16 6 C -0.21 -7.06 10.02 22.43 0.22 -6.84 16 7 C 0.01 0.22 9.70 22.70 0.22 0.44 16 8 C -0.25 -9.77 5.89 -19.99 -0.12 -9.89 16 9 C 0.58 23.31 7.74 86.72 0.67 23.98 16 10 O -0.59 -26.62 16.08 -3.96 -0.06 -26.68 16 11 N -0.69 -24.11 3.75 -445.60 -1.67 -25.79 16 12 C 0.15 4.39 2.58 44.99 0.12 4.50 16 13 H 0.06 2.07 7.58 -2.39 -0.02 2.05 16 14 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 15 C -0.12 -3.14 4.43 30.59 0.14 -3.00 16 16 C 0.16 5.62 2.89 44.99 0.13 5.75 16 17 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 18 C -0.15 -4.79 9.49 71.98 0.68 -4.11 16 19 N -0.72 -30.89 3.84 -322.94 -1.24 -32.13 16 20 C -0.22 -11.49 9.93 84.03 0.83 -10.66 16 21 H 0.05 2.76 7.83 -2.91 -0.02 2.74 16 22 C -0.04 -2.14 5.50 84.86 0.47 -1.68 16 23 N -0.92 -47.44 10.74 21.65 0.23 -47.21 16 24 Si 0.93 46.05 29.55 68.60 2.03 48.08 16 25 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 26 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 28 C 0.24 9.36 9.04 85.03 0.77 10.13 16 29 N -0.54 -21.01 8.61 -307.82 -2.65 -23.66 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.44 6.97 -2.39 -0.02 2.42 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.15 5.03 7.73 -2.91 -0.02 5.01 16 39 H 0.40 14.05 4.56 -92.71 -0.42 13.63 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 44 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.37 16.25 5.70 -92.71 -0.53 15.72 16 49 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 50 H 0.16 6.45 5.85 -2.91 -0.02 6.43 16 Total: -1.00 -62.36 404.65 2.68 -59.68 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.01 Total: 44.28 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.92 Total: 14.19 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.33 Total: -128.79 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.92 Total: -37.44 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -62.36 2.68 -59.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134532687.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.874 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds