Wall clock time and date at job start Tue Mar 31 2020 19:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47095 * 2 1 4 4 C 1.53001 * 109.47039 * 239.99662 * 2 1 3 5 5 C 1.52997 * 109.47001 * 175.00376 * 4 2 1 6 6 H 1.08990 * 109.47430 * 54.99946 * 5 4 2 7 7 C 1.52998 * 109.47053 * 175.00155 * 5 4 2 8 8 N 1.46499 * 109.46833 * 294.99594 * 5 4 2 9 9 C 1.34784 * 119.99893 * 155.00334 * 8 5 4 10 10 O 1.21610 * 119.99781 * 359.97438 * 9 8 5 11 11 C 1.47398 * 119.99800 * 179.72628 * 9 8 5 12 12 C 1.37356 * 128.56700 * 0.02627 * 11 9 8 13 13 O 1.33493 * 106.34162 * 179.97438 * 12 11 9 14 14 N 1.20659 * 113.15744 * 0.02562 * 13 12 11 15 15 C 1.30019 * 112.30107 * 359.68447 * 14 13 12 16 16 C 1.50695 * 127.33482 * 180.29549 * 15 14 13 17 17 C 1.54259 * 110.03353 * 57.37367 * 16 15 14 18 18 C 1.54893 * 104.19364 * 217.10605 * 17 16 15 19 19 C 1.54881 * 102.75017 * 37.93564 * 18 17 16 20 20 C 1.53874 * 110.03243 * 300.19998 * 16 15 14 21 21 N 1.46504 * 109.46819 * 119.99925 * 2 1 3 22 22 C 1.36935 * 119.99666 * 274.99280 * 21 2 1 23 23 H 1.07996 * 120.00688 * 0.02562 * 22 21 2 24 24 C 1.38814 * 119.99696 * 180.02562 * 22 21 2 25 25 N 1.31617 * 120.00202 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00137 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47221 * 89.99975 * 26 24 22 28 28 H 1.48500 * 109.47188 * 210.00064 * 26 24 22 29 29 H 1.48507 * 109.47041 * 330.00189 * 26 24 22 30 30 H 1.09004 * 109.46973 * 300.00352 * 1 2 3 31 31 H 1.08996 * 109.47250 * 59.99848 * 1 2 3 32 32 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46966 * 54.99909 * 4 2 1 34 34 H 1.09005 * 109.47004 * 295.00424 * 4 2 1 35 35 H 1.08997 * 109.47450 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47317 * 299.99808 * 7 5 4 37 37 H 1.09007 * 109.47248 * 59.99543 * 7 5 4 38 38 H 0.97005 * 120.00261 * 335.00546 * 8 5 4 39 39 H 1.07998 * 126.83367 * 0.02562 * 12 11 9 40 40 H 1.09003 * 110.01294 * 178.81108 * 16 15 14 41 41 H 1.09001 * 110.48580 * 335.77424 * 17 16 15 42 42 H 1.08999 * 110.49073 * 98.42345 * 17 16 15 43 43 H 1.09004 * 110.75029 * 279.62015 * 18 17 16 44 44 H 1.08998 * 110.75850 * 156.25894 * 18 17 16 45 45 H 1.09005 * 110.48971 * 203.37844 * 19 18 17 46 46 H 1.09001 * 110.59964 * 80.79662 * 19 18 17 47 47 H 1.09004 * 110.03541 * 238.56906 * 20 16 15 48 48 H 1.08993 * 110.03431 * 0.02562 * 20 16 15 49 49 H 0.96998 * 119.99946 * 95.00200 * 21 2 1 50 50 H 0.97003 * 120.00244 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9953 -0.9923 -0.3868 7 6 4.0851 -1.4385 -2.4924 8 7 3.9479 0.7892 -1.4925 9 6 5.1613 1.2134 -1.0868 10 8 5.9377 0.4318 -0.5718 11 6 5.5490 2.6233 -1.2723 12 6 4.8209 3.6453 -1.8309 13 8 5.5940 4.7321 -1.7739 14 7 6.6702 4.5229 -1.2700 15 6 6.8090 3.2845 -0.8990 16 6 8.0069 2.6590 -0.2322 17 6 8.3305 3.4039 1.0793 18 6 9.8782 3.4094 1.1409 19 6 10.2785 3.6240 -0.3398 20 6 9.2454 2.7989 -1.1345 21 7 2.0183 -0.6906 1.1962 22 6 2.1492 -0.0074 2.3757 23 1 1.8921 1.0404 2.4243 24 6 2.6123 -0.6616 3.5090 25 7 2.9261 -1.9385 3.4498 26 14 2.7902 0.2701 5.1183 27 1 1.5226 0.1781 5.8863 28 1 3.8952 -0.3225 5.9139 29 1 3.0942 1.6957 4.8339 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -0.2619 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 5.1714 -1.3613 -2.5386 36 1 3.8000 -2.4821 -2.3594 37 1 3.6545 -1.0595 -3.4193 38 1 3.3284 1.4127 -1.9029 39 1 3.8213 3.5824 -2.2350 40 1 7.8119 1.6065 -0.0262 41 1 7.9467 4.4235 1.0436 42 1 7.9166 2.8691 1.9341 43 1 10.2535 2.4541 1.5080 44 1 10.2373 4.2307 1.7611 45 1 11.2862 3.2498 -0.5208 46 1 10.2108 4.6787 -0.6065 47 1 9.6521 1.8143 -1.3657 48 1 8.9801 3.3196 -2.0545 49 1 2.2490 -1.6318 1.1527 50 1 3.2494 -2.3957 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134571594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:44 Heat of formation + Delta-G solvation = 10.245060 kcal Electronic energy + Delta-G solvation = -30068.420549 eV Core-core repulsion = 26098.244169 eV Total energy + Delta-G solvation = -3970.176380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.94377 -39.53898 -38.29184 -36.83107 -34.50316 -33.73531 -32.51940 -31.90055 -30.40933 -28.76891 -28.74879 -28.59841 -26.36498 -24.82248 -23.60075 -22.57286 -21.42227 -20.74210 -20.43915 -19.83455 -19.52874 -18.23687 -17.68132 -17.20800 -16.59645 -15.96040 -15.76445 -15.21491 -14.84659 -14.63860 -14.20967 -14.00923 -13.67189 -13.57685 -13.42488 -13.33295 -13.01607 -12.73474 -12.19153 -12.07764 -11.94561 -11.80194 -11.75753 -11.62321 -11.25944 -11.16828 -11.09662 -11.07348 -10.83523 -10.72066 -10.65678 -10.59972 -10.46181 -10.23727 -9.91396 -9.83846 -9.76350 -9.73893 -9.61720 -8.87828 -8.79252 -6.92144 -5.72674 -3.00708 1.05873 1.78840 2.88243 3.32890 3.44524 3.45434 3.50937 3.52423 3.95839 4.19548 4.57771 4.60879 4.62611 4.80111 4.88600 4.97810 5.13573 5.26429 5.37094 5.37418 5.45264 5.45508 5.50083 5.59079 5.61087 5.62431 5.66059 5.75916 5.82000 5.85436 5.90976 5.92377 5.98794 6.06718 6.10059 6.15770 6.23686 6.26176 6.32588 6.38811 6.41886 6.54048 6.66954 6.76103 6.88705 7.05281 7.67570 7.72602 8.16828 8.42258 8.45707 9.57186 10.13963 10.48061 11.49990 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009296 B = 0.003980 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.428732 B = 7033.018904 C = 8544.794660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.145 3.855 6 H 0.108 0.892 7 C -0.161 4.161 8 N -0.709 5.709 9 C 0.594 3.406 10 O -0.519 6.519 11 C -0.242 4.242 12 C -0.016 4.016 13 O 0.094 5.906 14 N -0.358 5.358 15 C 0.082 3.918 16 C -0.024 4.024 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.112 4.112 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.066 0.934 24 C -0.010 4.010 25 N -0.930 5.930 26 Si 0.901 3.099 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.392 0.608 39 H 0.224 0.776 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 9.775 -15.228 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.126 0.874 7 C -0.219 4.219 8 N -0.359 5.359 9 C 0.380 3.620 10 O -0.395 6.395 11 C -0.249 4.249 12 C -0.098 4.098 13 O 0.035 5.965 14 N -0.064 5.064 15 C -0.081 4.081 16 C -0.043 4.043 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.151 4.151 21 N -0.362 5.362 22 C -0.367 4.367 23 H 0.084 0.916 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.732 3.268 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.225 0.775 39 H 0.240 0.760 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.646 10.399 -14.670 19.540 hybrid contribution -0.865 -0.267 0.770 1.188 sum 6.781 10.132 -13.900 18.489 Atomic orbital electron populations 1.22464 0.99527 1.00849 0.99759 1.20220 0.91578 0.95472 0.86578 0.93748 1.22179 0.93560 1.02399 0.98846 1.21077 0.95223 0.79464 1.00082 0.87385 1.22188 1.01577 1.00263 0.97919 1.45790 1.15728 1.11968 1.62439 1.16755 0.82287 0.84751 0.78243 1.90798 1.51055 1.55118 1.42542 1.22510 0.96209 0.96723 1.09456 1.26344 0.98602 0.85437 0.99415 1.84563 1.19068 1.34113 1.58796 1.73599 1.00168 1.18390 1.14243 1.24765 0.96192 0.88488 0.98614 1.20506 0.88524 1.01344 0.93940 1.22451 0.96179 1.00458 0.96365 1.22487 0.95215 1.01885 0.96454 1.22350 0.98351 1.00098 0.95179 1.22177 0.94182 1.00638 0.98065 1.42391 1.77986 1.10562 1.05250 1.19135 1.36505 0.93652 0.87359 0.91576 1.24674 1.02122 0.95917 0.97883 1.69640 1.50864 1.08624 1.28751 0.86284 0.77254 0.78886 0.84347 1.21827 1.21762 1.20929 0.92909 0.94728 0.93498 0.92016 0.90448 0.92463 0.91575 0.93121 0.77498 0.76004 0.86522 0.91323 0.90743 0.91082 0.91431 0.91622 0.91631 0.91040 0.91895 0.78317 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.10 2.84 -67.93 -0.19 2.91 16 3 H 0.04 0.82 7.56 -51.93 -0.39 0.43 16 4 C -0.13 -1.87 4.29 -26.73 -0.11 -1.98 16 5 C 0.15 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.11 2.20 7.05 -51.93 -0.37 1.84 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.72 16 8 N -0.71 -9.65 4.44 -54.89 -0.24 -9.89 16 9 C 0.59 9.63 7.78 -12.53 -0.10 9.53 16 10 O -0.52 -10.49 14.94 5.27 0.08 -10.41 16 11 C -0.24 -3.35 6.47 -102.89 -0.67 -4.01 16 12 C -0.02 -0.16 11.85 30.41 0.36 0.20 16 13 O 0.09 1.11 11.06 18.65 0.21 1.31 16 14 N -0.36 -4.93 11.83 34.78 0.41 -4.52 16 15 C 0.08 1.19 5.79 -79.77 -0.46 0.72 16 16 C -0.02 -0.33 3.37 -90.66 -0.31 -0.64 16 17 C -0.12 -1.52 6.35 -25.07 -0.16 -1.68 16 18 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 19 C -0.12 -1.24 6.83 -25.08 -0.17 -1.41 16 20 C -0.11 -1.31 6.45 -25.62 -0.17 -1.48 16 21 N -0.72 -17.25 4.49 -53.42 -0.24 -17.49 16 22 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 26 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.39 3.93 7.79 -40.82 -0.32 3.61 16 39 H 0.22 1.09 7.68 -52.49 -0.40 0.69 16 40 H 0.12 1.88 6.34 -51.93 -0.33 1.55 16 41 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 49 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -33.52 406.25 -8.21 -41.73 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.39 Total: 11.18 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.85 Total: -8.40 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.65 Total: -59.35 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.29 Total: -9.10 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.52 -8.21 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134571594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.978 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds