Wall clock time and date at job start Tue Mar 31 2020 19:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47095 * 2 1 4 4 C 1.53001 * 109.47039 * 239.99662 * 2 1 3 5 5 C 1.52997 * 109.47001 * 175.00376 * 4 2 1 6 6 H 1.08990 * 109.47430 * 54.99946 * 5 4 2 7 7 C 1.52998 * 109.47053 * 175.00155 * 5 4 2 8 8 N 1.46499 * 109.46833 * 294.99594 * 5 4 2 9 9 C 1.34784 * 119.99893 * 155.00334 * 8 5 4 10 10 O 1.21610 * 119.99781 * 359.97438 * 9 8 5 11 11 C 1.47398 * 119.99800 * 179.72628 * 9 8 5 12 12 C 1.37356 * 128.56700 * 0.02627 * 11 9 8 13 13 O 1.33493 * 106.34162 * 179.97438 * 12 11 9 14 14 N 1.20659 * 113.15744 * 0.02562 * 13 12 11 15 15 C 1.30019 * 112.30107 * 359.68447 * 14 13 12 16 16 C 1.50695 * 127.33482 * 180.29549 * 15 14 13 17 17 C 1.54259 * 110.03353 * 57.37367 * 16 15 14 18 18 C 1.54893 * 104.19364 * 217.10605 * 17 16 15 19 19 C 1.54881 * 102.75017 * 37.93564 * 18 17 16 20 20 C 1.53874 * 110.03243 * 300.19998 * 16 15 14 21 21 N 1.46504 * 109.46819 * 119.99925 * 2 1 3 22 22 C 1.36935 * 119.99666 * 274.99280 * 21 2 1 23 23 H 1.07996 * 120.00688 * 0.02562 * 22 21 2 24 24 C 1.38814 * 119.99696 * 180.02562 * 22 21 2 25 25 N 1.31617 * 120.00202 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00137 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47221 * 89.99975 * 26 24 22 28 28 H 1.48500 * 109.47188 * 210.00064 * 26 24 22 29 29 H 1.48507 * 109.47041 * 330.00189 * 26 24 22 30 30 H 1.09004 * 109.46973 * 300.00352 * 1 2 3 31 31 H 1.08996 * 109.47250 * 59.99848 * 1 2 3 32 32 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46966 * 54.99909 * 4 2 1 34 34 H 1.09005 * 109.47004 * 295.00424 * 4 2 1 35 35 H 1.08997 * 109.47450 * 179.97438 * 7 5 4 36 36 H 1.08998 * 109.47317 * 299.99808 * 7 5 4 37 37 H 1.09007 * 109.47248 * 59.99543 * 7 5 4 38 38 H 0.97005 * 120.00261 * 335.00546 * 8 5 4 39 39 H 1.07998 * 126.83367 * 0.02562 * 12 11 9 40 40 H 1.09003 * 110.01294 * 178.81108 * 16 15 14 41 41 H 1.09001 * 110.48580 * 335.77424 * 17 16 15 42 42 H 1.08999 * 110.49073 * 98.42345 * 17 16 15 43 43 H 1.09004 * 110.75029 * 279.62015 * 18 17 16 44 44 H 1.08998 * 110.75850 * 156.25894 * 18 17 16 45 45 H 1.09005 * 110.48971 * 203.37844 * 19 18 17 46 46 H 1.09001 * 110.59964 * 80.79662 * 19 18 17 47 47 H 1.09004 * 110.03541 * 238.56906 * 20 16 15 48 48 H 1.08993 * 110.03431 * 0.02562 * 20 16 15 49 49 H 0.96998 * 119.99946 * 95.00200 * 21 2 1 50 50 H 0.97003 * 120.00244 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9953 -0.9923 -0.3868 7 6 4.0851 -1.4385 -2.4924 8 7 3.9479 0.7892 -1.4925 9 6 5.1613 1.2134 -1.0868 10 8 5.9377 0.4318 -0.5718 11 6 5.5490 2.6233 -1.2723 12 6 4.8209 3.6453 -1.8309 13 8 5.5940 4.7321 -1.7739 14 7 6.6702 4.5229 -1.2700 15 6 6.8090 3.2845 -0.8990 16 6 8.0069 2.6590 -0.2322 17 6 8.3305 3.4039 1.0793 18 6 9.8782 3.4094 1.1409 19 6 10.2785 3.6240 -0.3398 20 6 9.2454 2.7989 -1.1345 21 7 2.0183 -0.6906 1.1962 22 6 2.1492 -0.0074 2.3757 23 1 1.8921 1.0404 2.4243 24 6 2.6123 -0.6616 3.5090 25 7 2.9261 -1.9385 3.4498 26 14 2.7902 0.2701 5.1183 27 1 1.5226 0.1781 5.8863 28 1 3.8952 -0.3225 5.9139 29 1 3.0942 1.6957 4.8339 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -0.2619 -2.1369 34 1 1.7515 -1.7716 -1.2055 35 1 5.1714 -1.3613 -2.5386 36 1 3.8000 -2.4821 -2.3594 37 1 3.6545 -1.0595 -3.4193 38 1 3.3284 1.4127 -1.9029 39 1 3.8213 3.5824 -2.2350 40 1 7.8119 1.6065 -0.0262 41 1 7.9467 4.4235 1.0436 42 1 7.9166 2.8691 1.9341 43 1 10.2535 2.4541 1.5080 44 1 10.2373 4.2307 1.7611 45 1 11.2862 3.2498 -0.5208 46 1 10.2108 4.6787 -0.6065 47 1 9.6521 1.8143 -1.3657 48 1 8.9801 3.3196 -2.0545 49 1 2.2490 -1.6318 1.1527 50 1 3.2494 -2.3957 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134571594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:43 Heat of formation + Delta-G solvation = -11.376279 kcal Electronic energy + Delta-G solvation = -30069.358121 eV Core-core repulsion = 26098.244169 eV Total energy + Delta-G solvation = -3971.113952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.96292 -40.78909 -39.27811 -38.26119 -36.06352 -34.77754 -34.07262 -33.26753 -31.63663 -30.39504 -29.73253 -29.71424 -27.57827 -25.96585 -25.59350 -23.54741 -22.61247 -21.77919 -21.55571 -21.22581 -20.56196 -19.45339 -19.07180 -18.69273 -17.71752 -17.22771 -16.73299 -16.65883 -16.22358 -15.89966 -15.65647 -15.53239 -15.20058 -14.64812 -14.47062 -14.38198 -14.37178 -14.22184 -13.59362 -13.36507 -13.18337 -12.98348 -12.91921 -12.80140 -12.75671 -12.66711 -12.24224 -12.21890 -12.20287 -12.10754 -12.03040 -11.80883 -11.73232 -11.57052 -11.54765 -11.40162 -11.02668 -10.90438 -10.87996 -10.74544 -10.00433 -8.93495 -7.92075 -5.16577 0.11754 0.72274 1.41112 1.42964 1.49659 1.92136 2.22478 2.34721 2.55441 2.93958 3.21887 3.42852 3.62497 3.64210 3.82378 3.88354 3.90325 4.00938 4.08812 4.18898 4.39019 4.40151 4.42997 4.48981 4.51861 4.57099 4.66605 4.71375 4.72224 4.80078 4.82182 4.85811 4.91553 4.96509 4.96880 5.06842 5.13663 5.13980 5.17483 5.25177 5.30884 5.37745 5.38651 5.44628 5.51939 5.63966 5.67530 6.31664 6.58195 7.21168 7.28375 7.37599 8.19022 8.37388 9.31766 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009296 B = 0.003980 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.428732 B = 7033.018904 C = 8544.794660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.045 0.955 4 C -0.117 4.117 5 C 0.148 3.852 6 H 0.047 0.953 7 C -0.151 4.151 8 N -0.693 5.693 9 C 0.590 3.410 10 O -0.574 6.574 11 C -0.282 4.282 12 C 0.030 3.970 13 O 0.102 5.898 14 N -0.369 5.369 15 C 0.063 3.937 16 C -0.029 4.029 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.108 4.108 21 N -0.732 5.732 22 C -0.223 4.223 23 H 0.069 0.931 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.956 3.044 27 H -0.285 1.285 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.413 0.587 39 H 0.280 0.720 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.370 0.630 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 12.085 -17.876 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.065 0.935 7 C -0.209 4.209 8 N -0.344 5.344 9 C 0.377 3.623 10 O -0.455 6.455 11 C -0.289 4.289 12 C -0.052 4.052 13 O 0.043 5.957 14 N -0.075 5.075 15 C -0.100 4.100 16 C -0.048 4.048 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.146 4.146 21 N -0.372 5.372 22 C -0.356 4.356 23 H 0.087 0.913 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.786 3.214 27 H -0.212 1.212 28 H -0.228 1.228 29 H -0.201 1.201 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.251 0.749 39 H 0.296 0.704 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.202 0.798 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.110 12.778 -17.374 22.416 hybrid contribution -0.504 -0.927 1.484 1.821 sum 5.606 11.851 -15.890 20.600 Atomic orbital electron populations 1.22316 0.97727 1.00825 1.00790 1.20553 0.92619 0.95365 0.85971 0.93659 1.22090 0.92411 1.02400 0.98662 1.20863 0.95811 0.80437 0.98485 0.93461 1.22085 1.00337 1.00291 0.98231 1.45600 1.15304 1.11853 1.61685 1.17124 0.82374 0.85414 0.77387 1.90776 1.52775 1.56785 1.45137 1.22359 0.97304 0.96455 1.12799 1.27233 0.99203 0.83120 0.95633 1.84545 1.18697 1.34479 1.58019 1.73594 1.01165 1.17895 1.14846 1.24908 0.96790 0.89069 0.99196 1.20448 0.89840 0.99581 0.94944 1.22432 0.98155 0.99622 0.95321 1.22494 0.93140 1.02614 0.97375 1.22331 0.98724 1.00068 0.94118 1.22153 0.93686 1.01077 0.97721 1.42619 1.78195 1.10123 1.06304 1.19481 1.33817 0.93754 0.88517 0.91286 1.25366 1.03657 0.96776 1.00977 1.69786 1.53143 1.10052 1.28941 0.85391 0.76903 0.77974 0.81107 1.21165 1.22783 1.20134 0.95345 0.90172 0.94080 0.86973 0.90554 0.94521 0.91193 0.89628 0.74938 0.70445 0.89697 0.91716 0.92687 0.90974 0.89880 0.89658 0.91219 0.90921 0.92105 0.79849 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.49 71.98 0.68 -4.10 16 2 C 0.16 5.57 2.84 44.99 0.13 5.69 16 3 H 0.05 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.00 4.29 30.59 0.13 -2.87 16 5 C 0.15 4.41 2.52 44.99 0.11 4.52 16 6 H 0.05 2.03 7.05 -2.39 -0.02 2.01 16 7 C -0.15 -3.69 9.48 71.98 0.68 -3.00 16 8 N -0.69 -17.73 4.44 -445.83 -1.98 -19.71 16 9 C 0.59 19.38 7.78 86.65 0.67 20.05 16 10 O -0.57 -24.94 14.94 -4.06 -0.06 -25.00 16 11 C -0.28 -7.59 6.47 -18.74 -0.12 -7.71 16 12 C 0.03 0.50 11.85 67.61 0.80 1.30 16 13 O 0.10 2.13 11.06 76.98 0.85 2.98 16 14 N -0.37 -9.80 11.83 -44.77 -0.53 -10.33 16 15 C 0.06 1.83 5.79 45.15 0.26 2.09 16 16 C -0.03 -0.85 3.37 -10.82 -0.04 -0.88 16 17 C -0.12 -3.21 6.35 31.67 0.20 -3.01 16 18 C -0.12 -2.52 6.91 31.88 0.22 -2.30 16 19 C -0.12 -2.23 6.83 31.67 0.22 -2.02 16 20 C -0.11 -2.57 6.45 31.32 0.20 -2.37 16 21 N -0.73 -35.46 4.49 -322.93 -1.45 -36.92 16 22 C -0.22 -12.40 9.93 84.03 0.83 -11.57 16 23 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 25 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 26 Si 0.96 48.11 29.55 68.60 2.03 50.14 16 27 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 29 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 30 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.41 6.59 7.79 -92.70 -0.72 5.87 16 39 H 0.28 0.98 7.68 -2.91 -0.02 0.96 16 40 H 0.08 3.04 6.34 -2.39 -0.02 3.02 16 41 H 0.06 1.79 7.70 -2.39 -0.02 1.77 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.06 1.45 7.67 -2.39 -0.02 1.44 16 49 H 0.37 19.70 7.80 -92.71 -0.72 18.98 16 50 H 0.25 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -79.82 406.25 4.10 -75.72 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.50 Total: 33.91 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.46 Total: -10.18 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -3.68 Total: -127.58 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.79 Total: -22.02 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -79.82 4.10 -75.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134571594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.346 kcal (2) G-P(sol) polarization free energy of solvation -79.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds