Wall clock time and date at job start Tue Mar 31 2020 19:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 117.00029 * 2 1 4 4 C 1.38751 * 120.47829 * 359.97357 * 3 2 1 5 5 N 1.31807 * 120.68475 * 180.02562 * 4 3 2 6 6 C 1.31872 * 121.78135 * 359.72664 * 5 4 3 7 7 C 1.38208 * 120.88935 * 0.54270 * 6 5 4 8 8 C 1.50701 * 120.39092 * 179.75024 * 7 6 5 9 9 C 1.52999 * 109.47220 * 269.71855 * 8 7 6 10 10 C 1.50696 * 109.47436 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99509 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99893 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47456 * 324.99699 * 13 12 10 15 15 C 1.53005 * 109.47351 * 84.99825 * 13 12 10 16 16 C 1.53001 * 109.46991 * 204.99554 * 13 12 10 17 17 C 1.52997 * 109.47049 * 65.00027 * 16 13 12 18 18 H 1.09001 * 109.46832 * 55.00084 * 17 16 13 19 19 C 1.53006 * 109.47127 * 174.99763 * 17 16 13 20 20 N 1.46492 * 109.47244 * 295.00135 * 17 16 13 21 21 C 1.36940 * 120.00114 * 155.00043 * 20 17 16 22 22 H 1.07993 * 119.99751 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00020 * 179.97438 * 21 20 17 24 24 N 1.31623 * 120.00145 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99789 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47414 * 60.00498 * 25 23 21 27 27 H 1.48506 * 109.47174 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47185 * 299.99814 * 25 23 21 29 29 C 1.38584 * 119.22241 * 359.47199 * 7 6 5 30 30 H 1.08999 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46744 * 300.00030 * 1 2 3 32 32 H 1.08990 * 109.47000 * 59.99971 * 1 2 3 33 33 H 1.07999 * 119.65386 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.56071 * 180.26744 * 6 5 4 35 35 H 1.08996 * 109.47221 * 149.72045 * 8 7 6 36 36 H 1.08998 * 109.47236 * 29.71987 * 8 7 6 37 37 H 1.08996 * 109.47091 * 59.99472 * 9 8 7 38 38 H 1.09007 * 109.47149 * 300.00341 * 9 8 7 39 39 H 0.97002 * 120.00117 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46986 * 59.99408 * 15 13 12 41 41 H 1.08992 * 109.47402 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.46659 * 300.00045 * 15 13 12 43 43 H 1.08998 * 109.47252 * 305.00223 * 16 13 12 44 44 H 1.09006 * 109.47074 * 185.00416 * 16 13 12 45 45 H 1.09001 * 109.46998 * 59.99868 * 19 17 16 46 46 H 1.09000 * 109.47050 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.46801 * 300.00272 * 19 17 16 48 48 H 0.97005 * 120.00153 * 334.99565 * 20 17 16 49 49 H 0.96993 * 119.99993 * 179.97438 * 24 23 21 50 50 H 1.07994 * 120.81357 * 180.23635 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.3001 2.3809 -0.0006 5 7 1.8942 3.5574 -0.0011 6 6 3.2079 3.6721 0.0043 7 6 4.0179 2.5523 -0.0006 8 6 5.5180 2.6964 0.0000 9 6 6.0263 2.7443 -1.4423 10 6 7.5264 2.8877 -1.4419 11 8 8.1296 2.9464 -0.3913 12 7 8.1976 2.9519 -2.6088 13 6 9.6559 3.0919 -2.6083 14 1 9.9609 3.7136 -1.7666 15 6 10.3010 1.7103 -2.4820 16 6 10.1058 3.7471 -3.9157 17 6 9.5620 5.1756 -3.9838 18 1 9.8703 5.7244 -3.0940 19 6 10.1133 5.8724 -5.2294 20 7 8.0991 5.1385 -4.0522 21 6 7.3659 6.2099 -3.6167 22 1 7.8661 7.0821 -3.2225 23 6 5.9797 6.1749 -3.6821 24 7 5.3701 5.1118 -4.1621 25 14 4.9796 7.6363 -3.0874 26 1 5.3455 8.8403 -3.8757 27 1 3.5329 7.3502 -3.2626 28 1 5.2650 7.8796 -1.6505 29 6 3.4345 1.2952 0.0000 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 0.2214 2.3269 -0.0006 34 1 3.6571 4.6543 0.0080 35 1 5.9646 1.8455 0.5144 36 1 5.7944 3.6173 0.5133 37 1 5.5797 3.5950 -1.9569 38 1 5.7499 1.8233 -1.9558 39 1 7.7152 2.9053 -3.4491 40 1 9.9959 1.0885 -3.3237 41 1 11.3859 1.8144 -2.4820 42 1 9.9804 1.2435 -1.5506 43 1 9.7246 3.1727 -4.7600 44 1 11.1949 3.7706 -3.9544 45 1 9.8051 5.3234 -6.1192 46 1 9.7263 6.8902 -5.2776 47 1 11.2018 5.8999 -5.1784 48 1 7.6498 4.3549 -4.4060 49 1 4.4015 5.0872 -4.2073 50 1 4.0429 0.4030 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134951579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:50 Heat of formation + Delta-G solvation = -40.225643 kcal Electronic energy + Delta-G solvation = -29821.656232 eV Core-core repulsion = 25849.291278 eV Total energy + Delta-G solvation = -3972.364954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63988 -39.28742 -38.21859 -36.83292 -34.43666 -33.94595 -32.27062 -31.40525 -30.65006 -29.31871 -28.47602 -27.62698 -26.32412 -24.69584 -23.64906 -23.44112 -21.65405 -20.62558 -20.20201 -19.34704 -17.86146 -17.17383 -17.06604 -16.61931 -16.34621 -15.97943 -15.73836 -14.87988 -14.81812 -14.28454 -13.96565 -13.85986 -13.62980 -13.57334 -13.22406 -13.05321 -12.92344 -12.76641 -12.47616 -12.12204 -12.07213 -11.95240 -11.80992 -11.70586 -11.64259 -11.63260 -11.53128 -10.99667 -10.81944 -10.72541 -10.58347 -10.34516 -10.25433 -9.89816 -9.66947 -9.44856 -9.33491 -9.04706 -8.94424 -8.38071 -8.29496 -6.94535 -5.80343 -3.06414 1.17332 1.36613 3.04899 3.40766 3.43712 3.50189 3.51841 3.79369 3.99189 4.52692 4.59154 4.64267 4.86769 4.92557 4.96960 5.09271 5.12142 5.22580 5.27483 5.35893 5.43430 5.50162 5.52285 5.56008 5.69231 5.73434 5.80873 5.90311 5.94698 5.99224 6.02910 6.06663 6.16680 6.25592 6.27357 6.37945 6.44235 6.47696 6.57775 6.59790 6.61265 6.70576 6.86717 7.06526 7.14041 7.25631 7.69785 8.05477 8.27063 8.39183 8.99009 9.50598 10.04691 10.40570 11.41632 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003668 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.472571 B = 7631.571017 C = 9414.856905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.073 3.927 4 C 0.008 3.992 5 N -0.448 5.448 6 C 0.074 3.926 7 C -0.080 4.080 8 C -0.059 4.059 9 C -0.139 4.139 10 C 0.531 3.469 11 O -0.569 6.569 12 N -0.697 5.697 13 C 0.150 3.850 14 H 0.081 0.919 15 C -0.162 4.162 16 C -0.133 4.133 17 C 0.169 3.831 18 H 0.047 0.953 19 C -0.164 4.164 20 N -0.716 5.716 21 C -0.228 4.228 22 H 0.066 0.934 23 C -0.008 4.008 24 N -0.933 5.933 25 Si 0.895 3.105 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.286 1.286 29 C -0.107 4.107 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.405 0.595 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.378 0.622 49 H 0.255 0.745 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -11.005 4.813 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.026 3.974 4 C -0.150 4.150 5 N -0.156 5.156 6 C -0.084 4.084 7 C -0.082 4.082 8 C -0.097 4.097 9 C -0.179 4.179 10 C 0.318 3.682 11 O -0.449 6.449 12 N -0.349 5.349 13 C 0.044 3.956 14 H 0.100 0.900 15 C -0.220 4.220 16 C -0.172 4.172 17 C 0.060 3.940 18 H 0.065 0.935 19 C -0.224 4.224 20 N -0.359 5.359 21 C -0.359 4.359 22 H 0.084 0.916 23 C -0.204 4.204 24 N -0.583 5.583 25 Si 0.726 3.274 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.213 1.213 29 C -0.134 4.134 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.142 0.858 38 H 0.101 0.899 39 H 0.242 0.758 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.213 0.787 49 H 0.064 0.936 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.017 -10.266 5.602 11.867 hybrid contribution -0.834 0.051 -0.458 0.952 sum -2.851 -10.215 5.144 11.787 Atomic orbital electron populations 1.23080 0.78299 1.04055 1.01552 1.86058 1.21413 1.26329 1.88844 1.20032 0.93142 0.85538 0.98690 1.22825 1.00272 0.87392 1.04543 1.67536 1.12305 1.26308 1.09458 1.22679 0.88395 0.99125 0.98223 1.20842 0.97754 0.92654 0.96985 1.20288 0.88077 1.04323 0.97023 1.21667 0.93022 1.05813 0.97366 1.20352 0.89558 0.74762 0.83520 1.90604 1.70608 1.52096 1.31643 1.45970 1.06855 1.73099 1.09001 1.20770 0.80686 0.95418 0.98692 0.90047 1.22204 1.00225 0.97755 1.01826 1.22202 1.00452 0.97929 0.96623 1.20275 0.85886 0.92307 0.95572 0.93473 1.22427 0.98142 1.01634 1.00181 1.42440 0.98978 1.18909 1.75560 1.19153 0.88610 0.95074 1.33070 0.91606 1.24548 0.96220 0.97454 1.02148 1.69569 1.08330 1.28181 1.52176 0.86452 0.79649 0.82615 0.78653 1.21599 1.21592 1.21307 1.20802 0.91410 0.98479 1.02679 0.88123 0.92572 0.92409 0.82969 0.82357 0.90388 0.89619 0.85840 0.89931 0.75759 0.92915 0.92288 0.92475 0.91820 0.90972 0.93640 0.92905 0.94636 0.78703 0.93551 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.82 101.05 0.99 1.19 16 2 O -0.31 -3.73 10.51 -19.45 -0.20 -3.94 16 3 C 0.07 0.99 6.71 -39.07 -0.26 0.73 16 4 C 0.01 0.11 10.22 -17.37 -0.18 -0.07 16 5 N -0.45 -7.37 10.35 -13.13 -0.14 -7.51 16 6 C 0.07 1.20 10.85 -17.55 -0.19 1.01 16 7 C -0.08 -1.21 5.15 -104.50 -0.54 -1.75 16 8 C -0.06 -0.91 4.66 -27.88 -0.13 -1.04 16 9 C -0.14 -2.37 5.68 -27.89 -0.16 -2.53 16 10 C 0.53 9.96 7.79 -10.99 -0.09 9.87 16 11 O -0.57 -11.95 15.64 5.56 0.09 -11.86 16 12 N -0.70 -12.12 3.80 -53.81 -0.20 -12.33 16 13 C 0.15 2.36 2.57 -67.93 -0.17 2.19 16 14 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 16 C -0.13 -1.97 4.43 -26.73 -0.12 -2.09 16 17 C 0.17 3.10 2.89 -67.93 -0.20 2.90 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 20 N -0.72 -15.72 3.84 -53.43 -0.21 -15.93 16 21 C -0.23 -5.79 9.93 -15.06 -0.15 -5.94 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -24.58 12.78 55.49 0.71 -23.87 16 25 Si 0.89 21.59 29.55 -169.99 -5.02 16.57 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.11 -1.49 9.81 -39.13 -0.38 -1.88 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.37 7.68 -51.92 -0.40 -0.03 16 32 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 33 H 0.15 1.66 6.32 -52.49 -0.33 1.33 16 34 H 0.16 2.57 8.06 -52.49 -0.42 2.14 16 35 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 37 H 0.12 2.50 7.86 -51.93 -0.41 2.09 16 38 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 39 H 0.40 7.18 6.51 -40.82 -0.27 6.92 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.38 8.50 5.70 -40.82 -0.23 8.27 16 49 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 50 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 409.99 15.07 6.18 6.18 Total: -1.00 -29.63 409.99 -8.07 -37.69 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -8.30 Total: 16.93 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.96 Total: -1.94 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.16 Total: -59.63 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.12 Total: -15.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.63 -8.07 -37.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134951579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.532 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds