Wall clock time and date at job start Tue Mar 31 2020 19:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 117.00029 * 2 1 4 4 C 1.38751 * 120.47829 * 359.97357 * 3 2 1 5 5 N 1.31807 * 120.68475 * 180.02562 * 4 3 2 6 6 C 1.31872 * 121.78135 * 359.72664 * 5 4 3 7 7 C 1.38208 * 120.88935 * 0.54270 * 6 5 4 8 8 C 1.50701 * 120.39092 * 179.75024 * 7 6 5 9 9 C 1.52999 * 109.47220 * 269.71855 * 8 7 6 10 10 C 1.50696 * 109.47436 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99509 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99893 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47456 * 324.99699 * 13 12 10 15 15 C 1.53005 * 109.47351 * 84.99825 * 13 12 10 16 16 C 1.53001 * 109.46991 * 204.99554 * 13 12 10 17 17 C 1.52997 * 109.47049 * 65.00027 * 16 13 12 18 18 H 1.09001 * 109.46832 * 55.00084 * 17 16 13 19 19 C 1.53006 * 109.47127 * 174.99763 * 17 16 13 20 20 N 1.46492 * 109.47244 * 295.00135 * 17 16 13 21 21 C 1.36940 * 120.00114 * 155.00043 * 20 17 16 22 22 H 1.07993 * 119.99751 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00020 * 179.97438 * 21 20 17 24 24 N 1.31623 * 120.00145 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99789 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47414 * 60.00498 * 25 23 21 27 27 H 1.48506 * 109.47174 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47185 * 299.99814 * 25 23 21 29 29 C 1.38584 * 119.22241 * 359.47199 * 7 6 5 30 30 H 1.08999 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46744 * 300.00030 * 1 2 3 32 32 H 1.08990 * 109.47000 * 59.99971 * 1 2 3 33 33 H 1.07999 * 119.65386 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.56071 * 180.26744 * 6 5 4 35 35 H 1.08996 * 109.47221 * 149.72045 * 8 7 6 36 36 H 1.08998 * 109.47236 * 29.71987 * 8 7 6 37 37 H 1.08996 * 109.47091 * 59.99472 * 9 8 7 38 38 H 1.09007 * 109.47149 * 300.00341 * 9 8 7 39 39 H 0.97002 * 120.00117 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46986 * 59.99408 * 15 13 12 41 41 H 1.08992 * 109.47402 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.46659 * 300.00045 * 15 13 12 43 43 H 1.08998 * 109.47252 * 305.00223 * 16 13 12 44 44 H 1.09006 * 109.47074 * 185.00416 * 16 13 12 45 45 H 1.09001 * 109.46998 * 59.99868 * 19 17 16 46 46 H 1.09000 * 109.47050 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.46801 * 300.00272 * 19 17 16 48 48 H 0.97005 * 120.00153 * 334.99565 * 20 17 16 49 49 H 0.96993 * 119.99993 * 179.97438 * 24 23 21 50 50 H 1.07994 * 120.81357 * 180.23635 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.3001 2.3809 -0.0006 5 7 1.8942 3.5574 -0.0011 6 6 3.2079 3.6721 0.0043 7 6 4.0179 2.5523 -0.0006 8 6 5.5180 2.6964 0.0000 9 6 6.0263 2.7443 -1.4423 10 6 7.5264 2.8877 -1.4419 11 8 8.1296 2.9464 -0.3913 12 7 8.1976 2.9519 -2.6088 13 6 9.6559 3.0919 -2.6083 14 1 9.9609 3.7136 -1.7666 15 6 10.3010 1.7103 -2.4820 16 6 10.1058 3.7471 -3.9157 17 6 9.5620 5.1756 -3.9838 18 1 9.8703 5.7244 -3.0940 19 6 10.1133 5.8724 -5.2294 20 7 8.0991 5.1385 -4.0522 21 6 7.3659 6.2099 -3.6167 22 1 7.8661 7.0821 -3.2225 23 6 5.9797 6.1749 -3.6821 24 7 5.3701 5.1118 -4.1621 25 14 4.9796 7.6363 -3.0874 26 1 5.3455 8.8403 -3.8757 27 1 3.5329 7.3502 -3.2626 28 1 5.2650 7.8796 -1.6505 29 6 3.4345 1.2952 0.0000 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 0.2214 2.3269 -0.0006 34 1 3.6571 4.6543 0.0080 35 1 5.9646 1.8455 0.5144 36 1 5.7944 3.6173 0.5133 37 1 5.5797 3.5950 -1.9569 38 1 5.7499 1.8233 -1.9558 39 1 7.7152 2.9053 -3.4491 40 1 9.9959 1.0885 -3.3237 41 1 11.3859 1.8144 -2.4820 42 1 9.9804 1.2435 -1.5506 43 1 9.7246 3.1727 -4.7600 44 1 11.1949 3.7706 -3.9544 45 1 9.8051 5.3234 -6.1192 46 1 9.7263 6.8902 -5.2776 47 1 11.2018 5.8999 -5.1784 48 1 7.6498 4.3549 -4.4060 49 1 4.4015 5.0872 -4.2073 50 1 4.0429 0.4030 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134951579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:49 Heat of formation + Delta-G solvation = -57.763149 kcal Electronic energy + Delta-G solvation = -29822.416715 eV Core-core repulsion = 25849.291278 eV Total energy + Delta-G solvation = -3973.125438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71966 -40.71489 -39.21260 -38.30953 -35.88689 -35.35473 -33.99274 -32.60907 -31.98546 -30.65258 -30.04259 -28.37389 -27.57030 -25.91061 -25.53401 -24.58205 -22.84062 -21.90279 -21.63724 -20.81924 -19.07855 -18.85821 -18.14265 -17.84236 -17.62200 -17.15175 -16.80372 -16.60284 -16.24820 -15.57691 -15.45147 -15.21876 -15.12034 -14.68546 -14.50098 -14.23193 -14.19258 -14.09052 -13.86441 -13.56766 -13.30336 -13.19613 -13.04595 -12.96160 -12.83911 -12.75805 -12.70264 -12.56451 -12.41739 -12.26498 -12.15939 -11.95688 -11.67797 -11.56725 -11.37553 -10.84556 -10.76219 -10.48155 -10.37548 -9.74502 -9.45757 -8.79274 -7.83337 -5.05005 0.04682 0.23557 1.46154 1.51018 1.53049 1.91414 2.18577 2.52339 2.61787 2.75651 3.46493 3.50482 3.61489 3.72478 3.86041 3.94701 4.02762 4.08845 4.12290 4.21971 4.23521 4.37842 4.39036 4.42248 4.46227 4.56216 4.60866 4.71924 4.74793 4.77717 4.86343 4.89427 4.90084 4.96326 5.01244 5.11369 5.16454 5.19325 5.21290 5.33014 5.40848 5.45020 5.47147 5.62592 5.65813 5.88176 6.20290 6.38508 6.82241 6.90272 7.48490 7.52440 8.21289 8.48718 9.36821 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003668 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.472571 B = 7631.571017 C = 9414.856905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.080 3.920 4 C 0.005 3.995 5 N -0.472 5.472 6 C 0.049 3.951 7 C -0.082 4.082 8 C -0.048 4.048 9 C -0.129 4.129 10 C 0.524 3.476 11 O -0.596 6.596 12 N -0.694 5.694 13 C 0.145 3.855 14 H 0.055 0.945 15 C -0.151 4.151 16 C -0.120 4.120 17 C 0.162 3.838 18 H 0.029 0.971 19 C -0.154 4.154 20 N -0.718 5.718 21 C -0.226 4.226 22 H 0.055 0.945 23 C -0.044 4.044 24 N -0.940 5.940 25 Si 0.934 3.066 26 H -0.290 1.290 27 H -0.299 1.299 28 H -0.290 1.290 29 C -0.111 4.111 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.182 0.818 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.404 0.596 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.028 0.972 47 H 0.068 0.932 48 H 0.375 0.625 49 H 0.247 0.753 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 -13.031 4.194 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.032 3.968 4 C -0.153 4.153 5 N -0.181 5.181 6 C -0.108 4.108 7 C -0.084 4.084 8 C -0.086 4.086 9 C -0.169 4.169 10 C 0.312 3.688 11 O -0.478 6.478 12 N -0.344 5.344 13 C 0.041 3.959 14 H 0.073 0.927 15 C -0.209 4.209 16 C -0.158 4.158 17 C 0.053 3.947 18 H 0.047 0.953 19 C -0.214 4.214 20 N -0.361 5.361 21 C -0.359 4.359 22 H 0.073 0.927 23 C -0.239 4.239 24 N -0.591 5.591 25 Si 0.766 3.234 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.218 1.218 29 C -0.137 4.137 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.199 0.801 34 H 0.163 0.837 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.241 0.759 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.210 0.790 49 H 0.056 0.944 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.513 -12.284 4.963 13.335 hybrid contribution -1.000 0.642 -0.262 1.217 sum -2.513 -11.641 4.701 12.804 Atomic orbital electron populations 1.23452 0.75950 1.06183 1.02515 1.86064 1.23802 1.25182 1.88317 1.20061 0.93117 0.86182 0.97415 1.23285 1.01668 0.86815 1.03571 1.67504 1.12303 1.27884 1.10439 1.22598 0.88958 0.99202 1.00047 1.20690 0.97105 0.92964 0.97604 1.20148 0.88625 1.03947 0.95913 1.21555 0.91841 1.05252 0.98252 1.20635 0.90185 0.74503 0.83515 1.90582 1.71226 1.53515 1.32510 1.46040 1.07750 1.72183 1.08451 1.20905 0.79818 0.96869 0.98321 0.92716 1.22095 1.01458 0.95765 1.01577 1.22116 1.02318 0.95129 0.96236 1.20486 0.83863 0.94834 0.95471 0.95324 1.22282 1.00115 0.99837 0.99178 1.42488 1.00561 1.17820 1.75265 1.19253 0.88951 0.95584 1.32103 0.92698 1.24894 0.96903 0.98780 1.03275 1.69638 1.07640 1.28688 1.53115 0.85831 0.78332 0.81248 0.77990 1.21658 1.22503 1.21755 1.21013 0.92145 0.98449 1.02106 0.85551 0.91296 0.91710 0.80144 0.83688 0.89183 0.91328 0.88917 0.88091 0.75883 0.91432 0.89844 0.94084 0.90657 0.87574 0.93394 0.95316 0.91322 0.78982 0.94411 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -6.88 10.51 -92.52 -0.97 -7.86 16 3 C 0.08 2.05 6.71 22.60 0.15 2.21 16 4 C 0.00 0.13 10.22 84.82 0.87 1.00 16 5 N -0.47 -15.77 10.35 -195.45 -2.02 -17.79 16 6 C 0.05 1.67 10.85 84.68 0.92 2.59 16 7 C -0.08 -2.50 5.15 -19.79 -0.10 -2.60 16 8 C -0.05 -1.52 4.66 29.85 0.14 -1.38 16 9 C -0.13 -4.52 5.68 29.85 0.17 -4.35 16 10 C 0.52 19.96 7.79 87.66 0.68 20.64 16 11 O -0.60 -25.51 15.64 -3.03 -0.05 -25.56 16 12 N -0.69 -23.96 3.80 -442.54 -1.68 -25.64 16 13 C 0.15 4.41 2.57 44.99 0.12 4.53 16 14 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 15 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 16 C -0.12 -3.23 4.43 30.59 0.14 -3.09 16 17 C 0.16 5.74 2.89 44.99 0.13 5.87 16 18 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 19 C -0.15 -4.95 9.49 71.98 0.68 -4.26 16 20 N -0.72 -31.55 3.84 -322.95 -1.24 -32.79 16 21 C -0.23 -11.70 9.93 84.03 0.83 -10.86 16 22 H 0.05 2.92 7.83 -2.91 -0.02 2.89 16 23 C -0.04 -2.36 5.50 84.86 0.47 -1.89 16 24 N -0.94 -50.34 12.78 21.65 0.28 -50.06 16 25 Si 0.93 45.45 29.55 68.60 2.03 47.47 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 28 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 29 C -0.11 -2.98 9.81 22.56 0.22 -2.76 16 30 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.70 7.68 -2.38 -0.02 0.69 16 32 H 0.06 0.74 7.68 -2.39 -0.02 0.72 16 33 H 0.18 3.58 6.32 -2.91 -0.02 3.56 16 34 H 0.15 5.13 8.06 -2.91 -0.02 5.11 16 35 H 0.09 2.61 8.05 -2.39 -0.02 2.59 16 36 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 37 H 0.09 3.91 7.86 -2.39 -0.02 3.89 16 38 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 39 H 0.40 14.19 6.51 -92.71 -0.60 13.58 16 40 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.38 16.82 5.70 -92.70 -0.53 16.29 16 49 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 50 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -65.19 409.99 3.35 -61.83 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -0.20 Total: 46.43 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 7.21 Total: 3.96 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -4.67 Total: -126.29 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.02 Total: -33.41 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -65.19 3.35 -61.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134951579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.070 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds