Wall clock time and date at job start Tue Mar 31 2020 19:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35919 * 116.99865 * 2 1 4 4 C 1.38746 * 120.47119 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.68018 * 180.02562 * 4 3 2 6 6 C 1.31882 * 121.78112 * 359.97438 * 5 4 3 7 7 C 1.38206 * 120.88517 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.38699 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47426 * 270.04651 * 8 7 6 10 10 C 1.50701 * 109.47046 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00117 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99888 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99989 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46766 * 35.00125 * 13 12 10 15 15 C 1.53000 * 109.46836 * 275.00561 * 13 12 10 16 16 C 1.52994 * 109.47146 * 155.00134 * 13 12 10 17 17 C 1.52998 * 109.47138 * 295.00305 * 16 13 12 18 18 H 1.09000 * 109.47025 * 304.99278 * 17 16 13 19 19 C 1.53001 * 109.47024 * 184.99998 * 17 16 13 20 20 N 1.46492 * 109.47466 * 64.99887 * 17 16 13 21 21 C 1.36935 * 120.00060 * 204.99966 * 20 17 16 22 22 H 1.08000 * 120.00244 * 359.97438 * 21 20 17 23 23 C 1.38812 * 119.99838 * 179.97438 * 21 20 17 24 24 N 1.31618 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46999 * 90.00499 * 25 23 21 27 27 H 1.48495 * 109.47105 * 209.99980 * 25 23 21 28 28 H 1.48496 * 109.47213 * 330.00363 * 25 23 21 29 29 C 1.38583 * 119.22768 * 0.02698 * 7 6 5 30 30 H 1.08996 * 109.47439 * 300.00428 * 1 2 3 31 31 H 1.09007 * 109.46745 * 60.00668 * 1 2 3 32 32 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.66580 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.55505 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47036 * 30.04970 * 8 7 6 36 36 H 1.09005 * 109.47100 * 150.04577 * 8 7 6 37 37 H 1.09005 * 109.47129 * 299.99653 * 9 8 7 38 38 H 1.08998 * 109.47327 * 60.00121 * 9 8 7 39 39 H 0.96994 * 119.99724 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.47279 * 299.99663 * 15 13 12 41 41 H 1.08994 * 109.47520 * 60.00188 * 15 13 12 42 42 H 1.08998 * 109.46756 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46917 * 55.00181 * 16 13 12 44 44 H 1.08997 * 109.47262 * 174.99762 * 16 13 12 45 45 H 1.08999 * 109.47417 * 59.99572 * 19 17 16 46 46 H 1.08993 * 109.47289 * 179.97438 * 19 17 16 47 47 H 1.09005 * 109.47238 * 300.00188 * 19 17 16 48 48 H 0.97005 * 119.99824 * 25.00328 * 20 17 16 49 49 H 0.97003 * 120.00584 * 179.97438 * 24 23 21 50 50 H 1.07991 * 120.81450 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3808 -0.0005 5 7 1.8940 3.5575 -0.0010 6 6 3.2079 3.6722 -0.0006 7 6 4.0178 2.5524 0.0010 8 6 5.5179 2.6966 0.0010 9 6 6.0257 2.7446 -1.4415 10 6 7.5257 2.8894 -1.4414 11 8 8.1293 2.9479 -0.3911 12 7 8.1966 2.9528 -2.6086 13 6 9.6548 3.0941 -2.6086 14 1 10.0732 2.5436 -1.7660 15 6 10.0237 4.5738 -2.4847 16 6 10.2214 2.5348 -3.9151 17 6 9.9607 1.0287 -3.9806 18 1 10.3685 0.5503 -3.0901 19 6 10.6349 0.4481 -5.2253 20 7 8.5177 0.7853 -4.0484 21 6 8.0030 -0.4058 -3.6109 22 1 8.6608 -1.1660 -3.2162 23 6 6.6356 -0.6362 -3.6747 24 7 5.8339 0.2900 -4.1561 25 14 5.9334 -2.2613 -3.0785 26 1 5.5970 -2.1557 -1.6359 27 1 4.7065 -2.5834 -3.8505 28 1 6.9384 -3.3366 -3.2750 29 6 3.4344 1.2953 0.0016 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2212 2.3269 -0.0014 34 1 3.6568 4.6545 -0.0014 35 1 5.7944 3.6174 0.5143 36 1 5.9647 1.8457 0.5153 37 1 5.7492 1.8236 -1.9548 38 1 5.5789 3.5954 -1.9558 39 1 7.7139 2.9056 -3.4486 40 1 9.6054 5.1244 -3.3273 41 1 9.6201 4.9722 -1.5539 42 1 11.1086 4.6790 -2.4852 43 1 9.7373 3.0245 -4.7601 44 1 11.2949 2.7198 -3.9542 45 1 11.7085 0.6291 -5.1749 46 1 10.4495 -0.6250 -5.2718 47 1 10.2272 0.9265 -6.1159 48 1 7.9269 1.4679 -4.4033 49 1 4.8784 0.1290 -4.2011 50 1 4.0428 0.4031 0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134951580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:53 Heat of formation + Delta-G solvation = -40.620261 kcal Electronic energy + Delta-G solvation = -29962.742685 eV Core-core repulsion = 25990.360619 eV Total energy + Delta-G solvation = -3972.382066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61082 -39.28305 -38.17437 -36.83604 -34.43482 -33.94248 -32.27671 -31.38392 -30.64521 -29.32325 -28.48317 -27.56205 -26.32706 -24.68182 -23.66154 -23.42447 -21.64145 -20.61942 -20.20626 -19.34915 -17.82281 -17.18473 -17.02824 -16.62011 -16.34305 -15.90864 -15.73555 -14.88022 -14.80899 -14.22792 -13.95876 -13.87505 -13.61667 -13.57269 -13.30140 -12.96718 -12.90124 -12.73323 -12.45009 -12.13491 -12.07541 -11.97299 -11.79298 -11.69775 -11.63529 -11.60154 -11.51500 -11.02048 -10.83572 -10.73962 -10.56848 -10.35416 -10.24856 -9.90005 -9.68813 -9.42989 -9.34948 -9.02835 -8.96133 -8.37091 -8.29665 -6.95559 -5.81838 -3.07664 1.17564 1.39260 3.13625 3.40593 3.41460 3.48013 3.49510 3.79084 3.98923 4.50833 4.57297 4.68357 4.87728 4.98142 5.00641 5.11874 5.15846 5.25778 5.30198 5.36470 5.43804 5.50238 5.54056 5.56691 5.69563 5.74094 5.77375 5.91025 5.98437 6.01369 6.02679 6.11041 6.16325 6.24804 6.26678 6.37828 6.44100 6.49834 6.57507 6.60174 6.61083 6.71198 6.86104 7.05898 7.21393 7.25595 7.68846 8.00047 8.26962 8.37752 8.99080 9.49153 10.03519 10.39382 11.40162 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.003985 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.173825 B = 7025.227969 C = 9062.422066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.311 6.311 3 C 0.080 3.920 4 C 0.005 3.995 5 N -0.451 5.451 6 C 0.062 3.938 7 C -0.080 4.080 8 C -0.059 4.059 9 C -0.139 4.139 10 C 0.531 3.469 11 O -0.569 6.569 12 N -0.697 5.697 13 C 0.149 3.851 14 H 0.081 0.919 15 C -0.162 4.162 16 C -0.134 4.134 17 C 0.169 3.831 18 H 0.047 0.953 19 C -0.164 4.164 20 N -0.716 5.716 21 C -0.226 4.226 22 H 0.066 0.934 23 C -0.009 4.009 24 N -0.932 5.932 25 Si 0.895 3.105 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.285 1.285 29 C -0.100 4.100 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.405 0.595 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.378 0.622 49 H 0.254 0.746 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 6.674 4.767 8.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.032 3.968 4 C -0.153 4.153 5 N -0.160 5.160 6 C -0.096 4.096 7 C -0.082 4.082 8 C -0.097 4.097 9 C -0.179 4.179 10 C 0.318 3.682 11 O -0.450 6.450 12 N -0.349 5.349 13 C 0.044 3.956 14 H 0.099 0.901 15 C -0.220 4.220 16 C -0.172 4.172 17 C 0.060 3.940 18 H 0.065 0.935 19 C -0.224 4.224 20 N -0.359 5.359 21 C -0.357 4.357 22 H 0.084 0.916 23 C -0.205 4.205 24 N -0.582 5.582 25 Si 0.727 3.273 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.211 1.211 29 C -0.126 4.126 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.102 0.898 39 H 0.242 0.758 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.213 0.787 49 H 0.064 0.936 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.663 7.079 5.552 9.714 hybrid contribution -0.674 -1.617 -0.444 1.807 sum -4.337 5.462 5.108 8.645 Atomic orbital electron populations 1.23089 0.78336 1.04182 1.01379 1.86123 1.21378 1.26238 1.88548 1.20069 0.93162 0.85611 0.97921 1.22772 1.00196 0.87339 1.04965 1.67489 1.12177 1.26383 1.09934 1.22535 0.88533 0.98637 0.99919 1.20826 0.97695 0.92659 0.96988 1.20286 0.88214 1.04215 0.97008 1.21668 0.92499 1.06332 0.97379 1.20360 0.89754 0.74564 0.83513 1.90604 1.70633 1.52047 1.31667 1.45971 1.06866 1.73101 1.09000 1.20770 0.81300 0.94818 0.98683 0.90062 1.22202 1.00975 0.96983 1.01851 1.22201 1.00518 0.97847 0.96652 1.20274 0.86669 0.91510 0.95575 0.93485 1.22425 0.98031 1.01752 1.00179 1.42452 1.00428 1.17608 1.75432 1.19191 0.90757 0.92951 1.32829 0.91561 1.24552 0.96000 0.97711 1.02212 1.69580 1.03165 1.33241 1.52175 0.86365 0.78507 0.84072 0.78363 1.21693 1.21933 1.21096 1.20941 0.91587 0.98950 1.01135 0.92598 0.92419 0.88082 0.82926 0.82625 0.90144 0.89910 0.85932 0.89815 0.75766 0.92898 0.92448 0.92295 0.91804 0.90962 0.94621 0.92912 0.93628 0.78684 0.93643 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.22 16 2 O -0.31 -4.44 10.51 -19.48 -0.20 -4.64 16 3 C 0.08 1.20 6.71 -39.08 -0.26 0.94 16 4 C 0.01 0.07 10.22 -17.37 -0.18 -0.11 16 5 N -0.45 -6.73 10.36 -13.12 -0.14 -6.87 16 6 C 0.06 0.88 10.85 -17.54 -0.19 0.69 16 7 C -0.08 -1.21 5.15 -104.51 -0.54 -1.74 16 8 C -0.06 -0.91 4.66 -27.88 -0.13 -1.04 16 9 C -0.14 -2.38 5.68 -27.89 -0.16 -2.54 16 10 C 0.53 9.97 7.79 -10.98 -0.09 9.88 16 11 O -0.57 -11.96 15.64 5.55 0.09 -11.87 16 12 N -0.70 -12.13 3.80 -53.80 -0.20 -12.33 16 13 C 0.15 2.36 2.57 -67.93 -0.17 2.18 16 14 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 15 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 16 C -0.13 -1.97 4.43 -26.74 -0.12 -2.09 16 17 C 0.17 3.10 2.89 -67.94 -0.20 2.90 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 20 N -0.72 -15.75 3.84 -53.43 -0.21 -15.95 16 21 C -0.23 -5.75 9.93 -15.06 -0.15 -5.90 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -24.52 12.78 55.49 0.71 -23.82 16 25 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C -0.10 -1.61 9.81 -39.14 -0.38 -2.00 16 30 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 31 H 0.06 0.48 7.68 -51.92 -0.40 0.08 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.15 1.65 6.32 -52.48 -0.33 1.32 16 34 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 36 H 0.08 1.39 8.05 -51.93 -0.42 0.97 16 37 H 0.12 2.50 7.86 -51.93 -0.41 2.09 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.40 7.18 6.51 -40.82 -0.27 6.92 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.38 8.51 5.71 -40.82 -0.23 8.27 16 49 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 50 H 0.14 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 409.99 15.07 6.18 6.18 Total: -1.00 -29.65 409.99 -8.07 -37.72 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -8.30 Total: 17.15 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.96 Total: -2.16 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.16 Total: -58.97 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.12 Total: -16.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.65 -8.07 -37.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134951580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.904 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds