Wall clock time and date at job start Tue Mar 31 2020 19:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35919 * 116.99865 * 2 1 4 4 C 1.38746 * 120.47119 * 359.97438 * 3 2 1 5 5 N 1.31814 * 120.68018 * 180.02562 * 4 3 2 6 6 C 1.31882 * 121.78112 * 359.97438 * 5 4 3 7 7 C 1.38206 * 120.88517 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.38699 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47426 * 270.04651 * 8 7 6 10 10 C 1.50701 * 109.47046 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00117 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99888 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99989 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46766 * 35.00125 * 13 12 10 15 15 C 1.53000 * 109.46836 * 275.00561 * 13 12 10 16 16 C 1.52994 * 109.47146 * 155.00134 * 13 12 10 17 17 C 1.52998 * 109.47138 * 295.00305 * 16 13 12 18 18 H 1.09000 * 109.47025 * 304.99278 * 17 16 13 19 19 C 1.53001 * 109.47024 * 184.99998 * 17 16 13 20 20 N 1.46492 * 109.47466 * 64.99887 * 17 16 13 21 21 C 1.36935 * 120.00060 * 204.99966 * 20 17 16 22 22 H 1.08000 * 120.00244 * 359.97438 * 21 20 17 23 23 C 1.38812 * 119.99838 * 179.97438 * 21 20 17 24 24 N 1.31618 * 120.00253 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99914 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46999 * 90.00499 * 25 23 21 27 27 H 1.48495 * 109.47105 * 209.99980 * 25 23 21 28 28 H 1.48496 * 109.47213 * 330.00363 * 25 23 21 29 29 C 1.38583 * 119.22768 * 0.02698 * 7 6 5 30 30 H 1.08996 * 109.47439 * 300.00428 * 1 2 3 31 31 H 1.09007 * 109.46745 * 60.00668 * 1 2 3 32 32 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.66580 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.55505 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47036 * 30.04970 * 8 7 6 36 36 H 1.09005 * 109.47100 * 150.04577 * 8 7 6 37 37 H 1.09005 * 109.47129 * 299.99653 * 9 8 7 38 38 H 1.08998 * 109.47327 * 60.00121 * 9 8 7 39 39 H 0.96994 * 119.99724 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.47279 * 299.99663 * 15 13 12 41 41 H 1.08994 * 109.47520 * 60.00188 * 15 13 12 42 42 H 1.08998 * 109.46756 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46917 * 55.00181 * 16 13 12 44 44 H 1.08997 * 109.47262 * 174.99762 * 16 13 12 45 45 H 1.08999 * 109.47417 * 59.99572 * 19 17 16 46 46 H 1.08993 * 109.47289 * 179.97438 * 19 17 16 47 47 H 1.09005 * 109.47238 * 300.00188 * 19 17 16 48 48 H 0.97005 * 119.99824 * 25.00328 * 20 17 16 49 49 H 0.97003 * 120.00584 * 179.97438 * 24 23 21 50 50 H 1.07991 * 120.81450 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3808 -0.0005 5 7 1.8940 3.5575 -0.0010 6 6 3.2079 3.6722 -0.0006 7 6 4.0178 2.5524 0.0010 8 6 5.5179 2.6966 0.0010 9 6 6.0257 2.7446 -1.4415 10 6 7.5257 2.8894 -1.4414 11 8 8.1293 2.9479 -0.3911 12 7 8.1966 2.9528 -2.6086 13 6 9.6548 3.0941 -2.6086 14 1 10.0732 2.5436 -1.7660 15 6 10.0237 4.5738 -2.4847 16 6 10.2214 2.5348 -3.9151 17 6 9.9607 1.0287 -3.9806 18 1 10.3685 0.5503 -3.0901 19 6 10.6349 0.4481 -5.2253 20 7 8.5177 0.7853 -4.0484 21 6 8.0030 -0.4058 -3.6109 22 1 8.6608 -1.1660 -3.2162 23 6 6.6356 -0.6362 -3.6747 24 7 5.8339 0.2900 -4.1561 25 14 5.9334 -2.2613 -3.0785 26 1 5.5970 -2.1557 -1.6359 27 1 4.7065 -2.5834 -3.8505 28 1 6.9384 -3.3366 -3.2750 29 6 3.4344 1.2953 0.0016 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2212 2.3269 -0.0014 34 1 3.6568 4.6545 -0.0014 35 1 5.7944 3.6174 0.5143 36 1 5.9647 1.8457 0.5153 37 1 5.7492 1.8236 -1.9548 38 1 5.5789 3.5954 -1.9558 39 1 7.7139 2.9056 -3.4486 40 1 9.6054 5.1244 -3.3273 41 1 9.6201 4.9722 -1.5539 42 1 11.1086 4.6790 -2.4852 43 1 9.7373 3.0245 -4.7601 44 1 11.2949 2.7198 -3.9542 45 1 11.7085 0.6291 -5.1749 46 1 10.4495 -0.6250 -5.2718 47 1 10.2272 0.9265 -6.1159 48 1 7.9269 1.4679 -4.4033 49 1 4.8784 0.1290 -4.2011 50 1 4.0428 0.4031 0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134951580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:52 Heat of formation + Delta-G solvation = -58.226428 kcal Electronic energy + Delta-G solvation = -29963.506146 eV Core-core repulsion = 25990.360619 eV Total energy + Delta-G solvation = -3973.145527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72289 -40.71859 -39.23965 -38.31658 -35.89179 -35.34489 -34.00344 -32.62823 -31.99513 -30.65793 -30.04660 -28.40651 -27.57402 -25.92488 -25.55164 -24.56899 -22.84824 -21.91108 -21.64330 -20.82569 -19.09660 -18.89648 -18.13988 -17.84349 -17.61492 -17.16138 -16.84173 -16.61862 -16.24968 -15.58731 -15.45568 -15.28709 -15.07110 -14.67919 -14.55436 -14.21601 -14.17461 -14.11865 -13.85729 -13.53700 -13.31401 -13.29819 -13.01258 -12.94814 -12.87820 -12.78218 -12.73351 -12.56577 -12.43900 -12.27229 -12.15453 -11.94586 -11.68400 -11.58530 -11.38174 -10.86929 -10.76502 -10.51252 -10.37935 -9.74817 -9.46127 -8.80645 -7.85165 -5.06611 0.03789 0.21859 1.42770 1.48114 1.50357 1.91114 2.18784 2.52276 2.59561 2.76232 3.47490 3.48645 3.60168 3.73273 3.85933 3.94599 4.01466 4.05223 4.12637 4.21503 4.22229 4.34171 4.35741 4.41815 4.48073 4.50338 4.60146 4.68827 4.73327 4.79105 4.86036 4.89410 4.89739 4.95903 4.99095 5.11060 5.15817 5.19218 5.22071 5.34206 5.41047 5.44347 5.49406 5.61193 5.64960 5.87932 6.20439 6.36881 6.81984 6.87660 7.46715 7.52179 8.19726 8.47162 9.35143 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.003985 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.173825 B = 7025.227969 C = 9062.422066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.335 6.335 3 C 0.074 3.926 4 C 0.011 3.989 5 N -0.461 5.461 6 C 0.062 3.938 7 C -0.083 4.083 8 C -0.048 4.048 9 C -0.129 4.129 10 C 0.524 3.476 11 O -0.596 6.596 12 N -0.694 5.694 13 C 0.145 3.855 14 H 0.054 0.946 15 C -0.151 4.151 16 C -0.120 4.120 17 C 0.162 3.838 18 H 0.028 0.972 19 C -0.154 4.154 20 N -0.719 5.719 21 C -0.224 4.224 22 H 0.055 0.945 23 C -0.046 4.046 24 N -0.939 5.939 25 Si 0.933 3.067 26 H -0.298 1.298 27 H -0.299 1.299 28 H -0.283 1.283 29 C -0.126 4.126 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.404 0.596 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.047 0.953 48 H 0.376 0.624 49 H 0.246 0.754 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 8.361 4.124 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.027 3.973 4 C -0.147 4.147 5 N -0.169 5.169 6 C -0.095 4.095 7 C -0.085 4.085 8 C -0.087 4.087 9 C -0.169 4.169 10 C 0.312 3.688 11 O -0.479 6.479 12 N -0.344 5.344 13 C 0.041 3.959 14 H 0.072 0.928 15 C -0.209 4.209 16 C -0.158 4.158 17 C 0.054 3.946 18 H 0.046 0.954 19 C -0.214 4.214 20 N -0.362 5.362 21 C -0.357 4.357 22 H 0.073 0.927 23 C -0.240 4.240 24 N -0.590 5.590 25 Si 0.765 3.235 26 H -0.226 1.226 27 H -0.226 1.226 28 H -0.209 1.209 29 C -0.153 4.153 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.202 0.798 34 H 0.199 0.801 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.241 0.759 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.211 0.789 49 H 0.056 0.944 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.560 8.763 4.888 10.647 hybrid contribution -0.673 -2.208 -0.240 2.321 sum -4.233 6.555 4.648 9.082 Atomic orbital electron populations 1.23457 0.75727 1.06004 1.02850 1.86097 1.24169 1.26097 1.88435 1.20139 0.92815 0.86546 0.97846 1.23232 1.01573 0.86461 1.03439 1.67582 1.12338 1.26754 1.10267 1.22881 0.88406 0.99226 0.99013 1.20750 0.97311 0.92744 0.97659 1.20154 0.88592 1.04007 0.95919 1.21560 0.91725 1.05401 0.98245 1.20641 0.90391 0.74296 0.83512 1.90583 1.71234 1.53493 1.32541 1.46040 1.07737 1.72203 1.08444 1.20907 0.80150 0.96571 0.98296 0.92763 1.22092 1.02579 0.94585 1.01633 1.22116 1.02695 0.94732 0.96277 1.20484 0.84463 0.94219 0.95468 0.95372 1.22280 1.00015 0.99943 0.99178 1.42504 1.02169 1.16382 1.75132 1.19273 0.90657 0.93863 1.31861 0.92728 1.24903 0.96465 0.99294 1.03364 1.69644 1.02594 1.33652 1.53069 0.85760 0.77709 0.82607 0.77375 1.22567 1.22564 1.20927 1.20993 0.92595 0.98830 1.02843 0.90599 0.91344 0.86281 0.79791 0.80127 0.88578 0.92049 0.89202 0.87724 0.75883 0.91392 0.94025 0.89860 0.90616 0.87555 0.91299 0.95333 0.93354 0.78946 0.94431 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.82 113.37 1.11 1.34 16 2 O -0.34 -9.54 10.51 -92.64 -0.97 -10.51 16 3 C 0.07 2.24 6.71 22.60 0.15 2.39 16 4 C 0.01 0.28 10.22 84.82 0.87 1.15 16 5 N -0.46 -13.01 10.36 -195.44 -2.02 -15.04 16 6 C 0.06 1.70 10.85 84.68 0.92 2.62 16 7 C -0.08 -2.54 5.15 -19.79 -0.10 -2.64 16 8 C -0.05 -1.54 4.66 29.85 0.14 -1.40 16 9 C -0.13 -4.54 5.68 29.85 0.17 -4.37 16 10 C 0.52 19.98 7.79 87.66 0.68 20.67 16 11 O -0.60 -25.56 15.64 -3.04 -0.05 -25.61 16 12 N -0.69 -23.96 3.80 -442.53 -1.68 -25.64 16 13 C 0.15 4.41 2.57 44.99 0.12 4.52 16 14 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 15 C -0.15 -3.62 9.48 71.98 0.68 -2.94 16 16 C -0.12 -3.23 4.43 30.59 0.14 -3.10 16 17 C 0.16 5.75 2.89 44.99 0.13 5.88 16 18 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 19 C -0.15 -4.95 9.49 71.98 0.68 -4.26 16 20 N -0.72 -31.64 3.84 -322.96 -1.24 -32.88 16 21 C -0.22 -11.59 9.93 84.03 0.83 -10.76 16 22 H 0.05 2.92 7.83 -2.91 -0.02 2.89 16 23 C -0.05 -2.46 5.50 84.86 0.47 -1.99 16 24 N -0.94 -50.24 12.78 21.65 0.28 -49.96 16 25 Si 0.93 45.51 29.55 68.60 2.03 47.54 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 27 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 28 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 29 C -0.13 -4.26 9.81 22.56 0.22 -4.04 16 30 H 0.08 0.96 7.68 -2.39 -0.02 0.94 16 31 H 0.07 1.00 7.68 -2.38 -0.02 0.98 16 32 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.19 3.48 6.32 -2.91 -0.02 3.46 16 34 H 0.18 3.90 8.06 -2.91 -0.02 3.87 16 35 H 0.10 2.73 8.05 -2.39 -0.02 2.71 16 36 H 0.06 2.19 8.05 -2.38 -0.02 2.17 16 37 H 0.09 3.83 7.86 -2.38 -0.02 3.81 16 38 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 39 H 0.40 14.18 6.51 -92.71 -0.60 13.57 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.38 16.84 5.71 -92.70 -0.53 16.31 16 49 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 50 H 0.12 4.52 8.06 -2.92 -0.02 4.49 16 Total: -1.00 -65.51 409.99 3.35 -62.16 By element: Atomic # 1 Polarization: 47.06 SS G_CDS: -0.20 Total: 46.86 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 7.21 Total: 3.07 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -4.67 Total: -123.52 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.02 Total: -36.12 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.51 3.35 -62.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134951580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.937 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds