Wall clock time and date at job start Tue Mar 31 2020 19:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46825 * 89.99956 * 7 6 5 9 9 C 1.50694 * 109.46827 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00514 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00014 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46889 * 35.00409 * 12 11 9 14 14 C 1.52999 * 109.47607 * 275.00402 * 12 11 9 15 15 C 1.52999 * 109.47213 * 154.99674 * 12 11 9 16 16 C 1.52998 * 109.47406 * 295.00634 * 15 12 11 17 17 H 1.09003 * 109.46668 * 304.99348 * 16 15 12 18 18 C 1.53001 * 109.47364 * 185.00090 * 16 15 12 19 19 N 1.46496 * 109.47496 * 64.99551 * 16 15 12 20 20 C 1.36939 * 120.00293 * 205.00222 * 19 16 15 21 21 H 1.08004 * 119.99955 * 0.02562 * 20 19 16 22 22 C 1.38807 * 120.00271 * 179.97438 * 20 19 16 23 23 N 1.31626 * 119.99633 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00221 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47203 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47167 * 120.00357 * 24 22 20 27 27 H 1.48504 * 109.47020 * 240.00035 * 24 22 20 28 28 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 29 29 N 1.31967 * 120.83264 * 0.02562 * 28 6 5 30 30 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 31 31 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 32 32 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 34 34 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 36 36 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 37 37 H 1.08997 * 109.46997 * 299.99780 * 8 7 6 38 38 H 1.08996 * 109.46830 * 60.00318 * 8 7 6 39 39 H 0.96995 * 120.00319 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47382 * 59.99632 * 14 12 11 41 41 H 1.08998 * 109.47238 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.46565 * 299.99820 * 14 12 11 43 43 H 1.09006 * 109.46905 * 55.00509 * 15 12 11 44 44 H 1.09001 * 109.47172 * 175.00450 * 15 12 11 45 45 H 1.08999 * 109.46921 * 299.99700 * 18 16 15 46 46 H 1.09001 * 109.46942 * 59.99230 * 18 16 15 47 47 H 1.08994 * 109.47073 * 179.97438 * 18 16 15 48 48 H 0.96995 * 119.99711 * 25.00208 * 19 16 15 49 49 H 0.96998 * 119.99913 * 179.97438 * 23 22 20 50 50 H 1.07994 * 119.58392 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 6 4.0883 5.4839 -1.4410 9 6 4.7141 6.8547 -1.4410 10 8 4.9657 7.4066 -0.3907 11 7 4.9931 7.4681 -2.6082 12 6 5.6009 8.8011 -2.6082 13 1 6.2884 8.8869 -1.7667 14 6 4.5052 9.8614 -2.4817 15 6 6.3666 9.0124 -3.9159 16 6 7.5397 8.0326 -3.9841 17 1 8.1594 8.1453 -3.0945 18 6 8.3778 8.3263 -5.2300 19 7 7.0277 6.6617 -4.0520 20 6 7.8016 5.6193 -3.6165 21 1 8.7894 5.8079 -3.2226 22 6 7.3163 4.3204 -3.6804 23 7 6.1123 4.0907 -4.1600 24 14 8.3723 2.8984 -3.0870 25 1 9.6742 3.4191 -2.5980 26 1 7.6757 2.1919 -1.9820 27 1 8.6062 1.9538 -4.2087 28 6 1.8772 3.5097 0.0021 29 7 1.3187 2.3141 0.0026 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 4.0229 0.3694 -0.0035 34 1 5.1255 2.5946 0.0011 35 1 3.2187 5.7201 0.5158 36 1 4.8376 4.9803 0.5150 37 1 4.7466 4.7836 -1.9551 38 1 3.1276 5.5234 -1.9543 39 1 4.7915 7.0270 -3.4482 40 1 3.9597 9.7108 -1.5501 41 1 4.9575 10.8531 -2.4813 42 1 3.8177 9.7755 -3.3232 43 1 5.6990 8.8392 -4.7599 44 1 6.7440 10.0343 -3.9549 45 1 7.7582 8.2136 -6.1196 46 1 8.7588 9.3463 -5.1794 47 1 9.2138 7.6285 -5.2783 48 1 6.1404 6.4924 -4.4054 49 1 5.7732 3.1830 -4.2050 50 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134955288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:05 Heat of formation + Delta-G solvation = -58.108832 kcal Electronic energy + Delta-G solvation = -29776.613365 eV Core-core repulsion = 25803.472937 eV Total energy + Delta-G solvation = -3973.140428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66700 -40.69827 -39.07529 -38.27942 -35.80909 -35.01396 -33.98053 -33.21253 -32.12603 -30.59212 -30.00502 -28.18537 -27.56666 -25.73689 -25.53289 -24.42485 -22.96210 -21.92752 -21.63285 -20.79766 -19.40501 -19.07129 -18.12741 -17.94832 -17.15078 -16.96575 -16.61108 -16.27040 -15.98751 -15.56836 -15.47992 -15.40222 -15.22101 -14.89330 -14.51087 -14.28774 -14.18471 -14.04722 -13.80895 -13.53904 -13.29986 -13.27057 -12.97801 -12.89836 -12.85464 -12.77610 -12.56632 -12.49756 -12.26691 -12.09656 -12.04122 -11.90678 -11.67640 -11.57138 -11.37216 -10.89535 -10.85138 -10.68455 -10.56772 -9.73189 -9.36577 -8.78863 -7.82636 -5.04808 0.12861 0.23428 1.45294 1.51096 1.55032 1.93968 2.12562 2.53986 2.62334 2.77868 3.33690 3.50882 3.73042 3.87344 3.93187 4.00832 4.04234 4.13049 4.21926 4.29384 4.36778 4.41659 4.43471 4.46008 4.48121 4.60194 4.67515 4.73381 4.75053 4.83273 4.86391 4.89992 4.96389 4.96754 5.05485 5.11480 5.16469 5.19848 5.26893 5.40630 5.43262 5.44834 5.45989 5.62905 5.65748 5.89467 6.21755 6.39304 6.79217 6.84192 7.48832 7.54620 8.21239 8.49021 9.37998 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003581 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.890488 B = 7817.373260 C = 9596.534032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.298 3.702 4 C -0.194 4.194 5 C -0.043 4.043 6 C -0.162 4.162 7 C -0.040 4.040 8 C -0.130 4.130 9 C 0.523 3.477 10 O -0.597 6.597 11 N -0.694 5.694 12 C 0.146 3.854 13 H 0.054 0.946 14 C -0.151 4.151 15 C -0.120 4.120 16 C 0.162 3.838 17 H 0.028 0.972 18 C -0.154 4.154 19 N -0.719 5.719 20 C -0.225 4.225 21 H 0.054 0.946 22 C -0.046 4.046 23 N -0.941 5.941 24 Si 0.934 3.066 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.301 1.301 28 C 0.141 3.859 29 N -0.546 5.546 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.404 0.596 40 H 0.040 0.960 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.028 0.972 48 H 0.375 0.625 49 H 0.247 0.753 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 3.137 4.303 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.120 3.880 4 C -0.214 4.214 5 C -0.068 4.068 6 C -0.165 4.165 7 C -0.079 4.079 8 C -0.170 4.170 9 C 0.311 3.689 10 O -0.479 6.479 11 N -0.345 5.345 12 C 0.041 3.959 13 H 0.072 0.928 14 C -0.209 4.209 15 C -0.158 4.158 16 C 0.054 3.946 17 H 0.046 0.954 18 C -0.214 4.214 19 N -0.362 5.362 20 C -0.358 4.358 21 H 0.072 0.928 22 C -0.240 4.240 23 N -0.592 5.592 24 Si 0.767 3.233 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.229 1.229 28 C -0.014 4.014 29 N -0.269 5.269 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.241 0.759 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.210 0.790 49 H 0.057 0.943 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.575 3.090 5.086 12.135 hybrid contribution 1.363 -1.421 -0.319 1.995 sum -9.212 1.669 4.767 10.506 Atomic orbital electron populations 1.23056 0.75830 1.04613 1.02258 1.86211 1.24448 1.24289 1.87992 1.19984 0.89673 0.85135 0.93256 1.21201 0.92261 0.99847 1.08134 1.21514 1.00943 0.91357 0.93018 1.20762 0.95045 0.96138 1.04517 1.20027 1.00895 0.91571 0.95404 1.21594 1.02667 0.94034 0.98696 1.20708 0.77400 0.87355 0.83435 1.90581 1.56542 1.68246 1.32561 1.46053 1.61497 1.18447 1.08506 1.20893 0.94572 0.82182 0.98249 0.92768 1.22093 0.98562 0.98649 1.01591 1.22114 0.96911 1.00516 0.96270 1.20481 0.94053 0.84674 0.95439 0.95361 1.22281 0.99694 1.00258 0.99190 1.42500 1.17507 1.00881 1.75262 1.19322 0.97253 0.87234 1.31972 0.92799 1.24928 0.97709 0.98089 1.03312 1.69669 1.17001 1.19286 1.53201 0.85665 0.78818 0.81542 0.77292 1.21008 1.21771 1.22940 1.22654 0.92182 0.94028 0.92582 1.67342 1.40916 0.98979 1.19708 0.92302 0.92700 0.85922 0.83280 0.84516 0.89341 0.92009 0.89072 0.88116 0.75918 0.94045 0.89906 0.91443 0.90684 0.87638 0.93398 0.91350 0.95304 0.78980 0.94350 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.88 16 2 O -0.32 -8.61 10.48 -89.90 -0.94 -9.55 16 3 C 0.30 8.80 7.49 84.79 0.63 9.44 16 4 C -0.19 -5.70 10.04 22.47 0.23 -5.47 16 5 C -0.04 -1.31 9.85 22.45 0.22 -1.09 16 6 C -0.16 -4.71 5.15 -19.77 -0.10 -4.81 16 7 C -0.04 -1.23 4.66 29.85 0.14 -1.09 16 8 C -0.13 -4.41 5.68 29.85 0.17 -4.24 16 9 C 0.52 19.55 7.79 87.65 0.68 20.23 16 10 O -0.60 -25.16 15.64 -3.03 -0.05 -25.21 16 11 N -0.69 -23.61 3.80 -442.54 -1.68 -25.30 16 12 C 0.15 4.36 2.57 44.99 0.12 4.48 16 13 H 0.05 1.93 7.58 -2.38 -0.02 1.91 16 14 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 15 C -0.12 -3.20 4.43 30.59 0.14 -3.06 16 16 C 0.16 5.69 2.89 44.99 0.13 5.82 16 17 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 18 C -0.15 -4.91 9.49 71.98 0.68 -4.22 16 19 N -0.72 -31.19 3.84 -322.95 -1.24 -32.43 16 20 C -0.23 -11.48 9.93 84.03 0.83 -10.64 16 21 H 0.05 2.85 7.83 -2.91 -0.02 2.82 16 22 C -0.05 -2.41 5.50 84.86 0.47 -1.94 16 23 N -0.94 -49.35 12.78 21.65 0.28 -49.08 16 24 Si 0.93 44.01 29.55 68.60 2.03 46.03 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 28 C 0.14 3.73 10.85 84.63 0.92 4.65 16 29 N -0.55 -15.63 9.22 -308.95 -2.85 -18.48 16 30 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 31 H 0.05 1.08 8.11 -2.38 -0.02 1.06 16 32 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.09 2.44 8.05 -2.39 -0.02 2.42 16 36 H 0.06 2.08 8.05 -2.39 -0.02 2.07 16 37 H 0.09 3.75 7.86 -2.39 -0.02 3.73 16 38 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.40 13.98 6.51 -92.71 -0.60 13.38 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.38 16.64 5.70 -92.71 -0.53 16.11 16 49 H 0.25 13.03 8.31 -92.71 -0.77 12.26 16 50 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -62.23 412.61 2.46 -59.78 By element: Atomic # 1 Polarization: 47.42 SS G_CDS: -0.20 Total: 47.22 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 7.12 Total: 7.01 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -5.49 Total: -125.28 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.99 Total: -34.76 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.23 2.46 -59.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134955288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.667 kcal (2) G-P(sol) polarization free energy of solvation -62.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds