Wall clock time and date at job start Tue Mar 31 2020 19:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35671 * 117.00191 * 2 1 4 4 C 1.38918 * 119.68427 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.11009 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48818 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.35550 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47210 * 89.99751 * 7 6 5 9 9 C 1.50708 * 109.46829 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00039 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99804 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99862 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47155 * 325.00016 * 12 11 9 14 14 C 1.53000 * 109.46844 * 85.00149 * 12 11 9 15 15 C 1.53003 * 109.46925 * 204.99701 * 12 11 9 16 16 C 1.53004 * 109.46807 * 65.00479 * 15 12 11 17 17 H 1.08995 * 109.47216 * 304.99653 * 16 15 12 18 18 C 1.52999 * 109.47083 * 184.99648 * 16 15 12 19 19 N 1.46498 * 109.47065 * 64.99542 * 16 15 12 20 20 C 1.36943 * 119.99752 * 204.72207 * 19 16 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.38047 * 119.28598 * 0.24789 * 6 5 4 29 29 N 1.31966 * 120.83398 * 359.46280 * 28 6 5 30 30 H 1.08997 * 109.46889 * 60.00537 * 1 2 3 31 31 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46864 * 300.00449 * 1 2 3 33 33 H 1.08001 * 120.44409 * 0.02562 * 4 3 2 34 34 H 1.08008 * 120.75273 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46918 * 329.99385 * 7 6 5 36 36 H 1.09000 * 109.46745 * 209.99675 * 7 6 5 37 37 H 1.09005 * 109.47097 * 60.00317 * 8 7 6 38 38 H 1.09000 * 109.47204 * 299.99643 * 8 7 6 39 39 H 0.97000 * 120.00140 * 0.02562 * 11 9 8 40 40 H 1.08994 * 109.47045 * 299.99708 * 14 12 11 41 41 H 1.08998 * 109.47353 * 59.99989 * 14 12 11 42 42 H 1.09005 * 109.47051 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47316 * 305.00570 * 15 12 11 44 44 H 1.08998 * 109.46869 * 185.00040 * 15 12 11 45 45 H 1.08996 * 109.47245 * 179.97438 * 18 16 15 46 46 H 1.08995 * 109.47098 * 300.00077 * 18 16 15 47 47 H 1.09003 * 109.47054 * 59.99725 * 18 16 15 48 48 H 0.97001 * 120.00384 * 25.00562 * 19 16 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.07994 * 119.58111 * 179.72323 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6491 -0.0016 7 6 3.8770 5.0197 -0.0016 8 6 4.0896 5.4833 -1.4441 9 6 4.7154 6.8542 -1.4440 10 8 4.9662 7.4063 -0.3937 11 7 4.9955 7.4672 -2.6111 12 6 5.6033 8.8002 -2.6111 13 1 5.2175 9.3754 -1.7695 14 6 7.1224 8.6679 -2.4848 15 6 5.2608 9.5169 -3.9187 16 6 3.7518 9.7603 -3.9867 17 1 3.2251 8.8146 -3.8586 18 6 3.3932 10.3636 -5.3462 19 7 3.3581 10.6866 -2.9222 20 6 2.0739 10.6771 -2.4466 21 1 1.3526 9.9836 -2.8533 22 6 1.6993 11.5587 -1.4420 23 7 2.5783 12.4041 -0.9469 24 14 -0.0522 11.5452 -0.7928 25 1 -0.1511 10.5962 0.3451 26 1 -0.4204 12.9086 -0.3337 27 1 -0.9775 11.1202 -1.8737 28 6 1.8772 3.5096 0.0036 29 7 1.3187 2.3140 -0.0015 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0229 0.3694 -0.0014 34 1 5.1256 2.5944 -0.0019 35 1 4.8372 4.9803 0.5127 36 1 3.2183 5.7201 0.5118 37 1 3.1293 5.5227 -1.9583 38 1 4.7483 4.7828 -1.9575 39 1 4.7939 7.0261 -3.4512 40 1 7.3664 8.1573 -1.5533 41 1 7.5082 8.0927 -3.3264 42 1 7.5747 9.6597 -2.4852 43 1 5.5676 8.8993 -4.7627 44 1 5.7849 10.4718 -3.9576 45 1 2.3182 10.5365 -5.3949 46 1 3.9199 11.3092 -5.4743 47 1 3.6862 9.6744 -6.1382 48 1 4.0058 11.3094 -2.5571 49 1 2.3166 13.0199 -0.2446 50 1 1.2520 4.3901 0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134955289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:09 Heat of formation + Delta-G solvation = -46.616993 kcal Electronic energy + Delta-G solvation = -28675.830819 eV Core-core repulsion = 24703.188715 eV Total energy + Delta-G solvation = -3972.642104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87835 -39.57320 -38.27742 -36.86729 -34.52819 -34.12242 -32.43677 -32.12378 -30.91159 -29.49758 -28.56692 -27.50636 -26.30825 -24.88651 -23.66641 -23.57150 -22.01628 -20.90764 -20.06405 -19.67711 -18.63157 -17.35584 -17.32550 -16.86199 -16.23437 -15.83577 -15.36548 -15.14706 -14.71682 -14.71032 -14.48159 -13.99096 -13.89070 -13.71883 -13.50326 -13.34382 -13.16970 -12.86663 -12.57900 -12.36809 -12.19969 -12.11608 -11.96543 -11.74709 -11.71037 -11.55325 -11.30174 -11.12642 -10.99724 -10.80008 -10.59378 -10.39404 -10.20456 -10.10189 -9.87282 -9.81406 -9.59501 -9.47050 -8.85330 -8.64995 -8.57266 -6.89354 -5.70490 -2.98380 0.92220 1.03579 2.85167 3.01373 3.43144 3.47316 3.51827 3.53656 3.61449 4.11295 4.57097 4.64478 4.72839 4.76250 4.86403 4.98616 5.05404 5.05960 5.12760 5.12990 5.27400 5.37447 5.42497 5.46100 5.50614 5.58101 5.65077 5.71151 5.71744 5.80299 5.91801 5.96565 6.03569 6.06361 6.15583 6.18529 6.26633 6.31312 6.37790 6.46147 6.59167 6.75677 6.85150 6.96939 6.98189 7.09299 7.63261 7.74280 7.85898 8.47917 8.61630 9.59143 10.16828 10.50932 11.52301 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.002722 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.632651 B =10284.215973 C =11884.627046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.310 3.690 4 C -0.189 4.189 5 C -0.038 4.038 6 C -0.165 4.165 7 C -0.057 4.057 8 C -0.135 4.135 9 C 0.512 3.488 10 O -0.534 6.534 11 N -0.718 5.718 12 C 0.143 3.857 13 H 0.105 0.895 14 C -0.160 4.160 15 C -0.131 4.131 16 C 0.172 3.828 17 H 0.045 0.955 18 C -0.166 4.166 19 N -0.720 5.720 20 C -0.234 4.234 21 H 0.067 0.933 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.145 3.855 29 N -0.538 5.538 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.393 0.607 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -22.453 -3.235 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.131 3.869 4 C -0.210 4.210 5 C -0.064 4.064 6 C -0.168 4.168 7 C -0.095 4.095 8 C -0.175 4.175 9 C 0.298 3.702 10 O -0.410 6.410 11 N -0.369 5.369 12 C 0.039 3.961 13 H 0.123 0.877 14 C -0.219 4.219 15 C -0.169 4.169 16 C 0.062 3.938 17 H 0.063 0.937 18 C -0.226 4.226 19 N -0.362 5.362 20 C -0.365 4.365 21 H 0.084 0.916 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.734 3.266 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.209 1.209 28 C -0.011 4.011 29 N -0.261 5.261 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.226 0.774 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.205 -22.425 -2.423 22.944 hybrid contribution -0.336 0.264 -0.036 0.429 sum 3.868 -22.161 -2.459 22.631 Atomic orbital electron populations 1.22847 0.77233 1.02805 1.02589 1.86218 1.22931 1.24728 1.88006 1.19866 0.89461 0.84745 0.92804 1.21046 0.91978 0.99505 1.08454 1.21359 1.00575 0.90703 0.93743 1.20814 0.94735 0.96569 1.04636 1.20194 1.02096 0.91367 0.95836 1.21654 1.02515 0.94538 0.98782 1.20478 0.78283 0.87397 0.84032 1.90728 1.52734 1.66402 1.31184 1.45996 1.63728 1.19137 1.08052 1.21009 0.91595 0.82973 1.00520 0.87708 1.22177 0.96371 1.01928 1.01381 1.22162 0.98683 1.00392 0.95696 1.20215 0.91289 0.93664 0.88647 0.93658 1.22464 1.01750 1.00121 0.98264 1.42396 1.10787 1.41919 1.41077 1.19143 0.87742 1.15088 1.14524 0.91551 1.24696 0.97609 0.98957 0.99560 1.69649 1.33265 1.24498 1.30574 0.86262 0.84715 0.76787 0.78865 1.21753 1.21872 1.20922 1.22437 0.92468 0.93602 0.92585 1.67345 1.40913 0.98807 1.18988 0.92249 0.88747 0.92291 0.84245 0.84065 0.90004 0.89495 0.88850 0.89325 0.77351 0.92586 0.93259 0.91843 0.92149 0.90736 0.92934 0.93553 0.94766 0.78360 0.93611 0.82078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.32 10.48 -18.72 -0.20 -3.51 16 3 C 0.31 3.51 7.49 -17.12 -0.13 3.38 16 4 C -0.19 -1.79 10.04 -39.28 -0.39 -2.18 16 5 C -0.04 -0.34 9.85 -39.31 -0.39 -0.73 16 6 C -0.17 -1.66 5.15 -104.47 -0.54 -2.20 16 7 C -0.06 -0.62 4.66 -27.89 -0.13 -0.75 16 8 C -0.13 -1.44 5.68 -27.88 -0.16 -1.60 16 9 C 0.51 7.71 7.79 -10.98 -0.09 7.63 16 10 O -0.53 -10.54 15.64 5.56 0.09 -10.45 16 11 N -0.72 -9.86 4.45 -53.80 -0.24 -10.10 16 12 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 13 H 0.10 2.21 7.05 -51.93 -0.37 1.84 16 14 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 15 C -0.13 -1.95 4.29 -26.73 -0.11 -2.07 16 16 C 0.17 3.20 2.84 -67.93 -0.19 3.01 16 17 H 0.05 0.86 7.56 -51.93 -0.39 0.46 16 18 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 19 N -0.72 -17.48 4.49 -53.43 -0.24 -17.72 16 20 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 24 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 C 0.14 1.60 10.85 -17.56 -0.19 1.41 16 29 N -0.54 -6.47 9.22 -13.33 -0.12 -6.59 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.39 4.21 8.60 -40.82 -0.35 3.86 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 417.35 15.07 6.29 6.29 Total: -1.00 -34.36 417.35 -8.27 -42.63 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.57 Total: 11.38 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.98 Total: -1.98 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.12 Total: -62.10 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.11 Total: -13.97 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.36 -8.27 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134955289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.985 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds