Wall clock time and date at job start Tue Mar 31 2020 19:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35671 * 117.00191 * 2 1 4 4 C 1.38918 * 119.68427 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.11009 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48818 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.35550 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47210 * 89.99751 * 7 6 5 9 9 C 1.50708 * 109.46829 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00039 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99804 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99862 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47155 * 325.00016 * 12 11 9 14 14 C 1.53000 * 109.46844 * 85.00149 * 12 11 9 15 15 C 1.53003 * 109.46925 * 204.99701 * 12 11 9 16 16 C 1.53004 * 109.46807 * 65.00479 * 15 12 11 17 17 H 1.08995 * 109.47216 * 304.99653 * 16 15 12 18 18 C 1.52999 * 109.47083 * 184.99648 * 16 15 12 19 19 N 1.46498 * 109.47065 * 64.99542 * 16 15 12 20 20 C 1.36943 * 119.99752 * 204.72207 * 19 16 15 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 16 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 16 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 90.00155 * 24 22 20 26 26 H 1.48499 * 109.47218 * 210.00015 * 24 22 20 27 27 H 1.48496 * 109.47166 * 329.99846 * 24 22 20 28 28 C 1.38047 * 119.28598 * 0.24789 * 6 5 4 29 29 N 1.31966 * 120.83398 * 359.46280 * 28 6 5 30 30 H 1.08997 * 109.46889 * 60.00537 * 1 2 3 31 31 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46864 * 300.00449 * 1 2 3 33 33 H 1.08001 * 120.44409 * 0.02562 * 4 3 2 34 34 H 1.08008 * 120.75273 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46918 * 329.99385 * 7 6 5 36 36 H 1.09000 * 109.46745 * 209.99675 * 7 6 5 37 37 H 1.09005 * 109.47097 * 60.00317 * 8 7 6 38 38 H 1.09000 * 109.47204 * 299.99643 * 8 7 6 39 39 H 0.97000 * 120.00140 * 0.02562 * 11 9 8 40 40 H 1.08994 * 109.47045 * 299.99708 * 14 12 11 41 41 H 1.08998 * 109.47353 * 59.99989 * 14 12 11 42 42 H 1.09005 * 109.47051 * 179.97438 * 14 12 11 43 43 H 1.08993 * 109.47316 * 305.00570 * 15 12 11 44 44 H 1.08998 * 109.46869 * 185.00040 * 15 12 11 45 45 H 1.08996 * 109.47245 * 179.97438 * 18 16 15 46 46 H 1.08995 * 109.47098 * 300.00077 * 18 16 15 47 47 H 1.09003 * 109.47054 * 59.99725 * 18 16 15 48 48 H 0.97001 * 120.00384 * 25.00562 * 19 16 15 49 49 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 50 50 H 1.07994 * 119.58111 * 179.72323 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6491 -0.0016 7 6 3.8770 5.0197 -0.0016 8 6 4.0896 5.4833 -1.4441 9 6 4.7154 6.8542 -1.4440 10 8 4.9662 7.4063 -0.3937 11 7 4.9955 7.4672 -2.6111 12 6 5.6033 8.8002 -2.6111 13 1 5.2175 9.3754 -1.7695 14 6 7.1224 8.6679 -2.4848 15 6 5.2608 9.5169 -3.9187 16 6 3.7518 9.7603 -3.9867 17 1 3.2251 8.8146 -3.8586 18 6 3.3932 10.3636 -5.3462 19 7 3.3581 10.6866 -2.9222 20 6 2.0739 10.6771 -2.4466 21 1 1.3526 9.9836 -2.8533 22 6 1.6993 11.5587 -1.4420 23 7 2.5783 12.4041 -0.9469 24 14 -0.0522 11.5452 -0.7928 25 1 -0.1511 10.5962 0.3451 26 1 -0.4204 12.9086 -0.3337 27 1 -0.9775 11.1202 -1.8737 28 6 1.8772 3.5096 0.0036 29 7 1.3187 2.3140 -0.0015 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0229 0.3694 -0.0014 34 1 5.1256 2.5944 -0.0019 35 1 4.8372 4.9803 0.5127 36 1 3.2183 5.7201 0.5118 37 1 3.1293 5.5227 -1.9583 38 1 4.7483 4.7828 -1.9575 39 1 4.7939 7.0261 -3.4512 40 1 7.3664 8.1573 -1.5533 41 1 7.5082 8.0927 -3.3264 42 1 7.5747 9.6597 -2.4852 43 1 5.5676 8.8993 -4.7627 44 1 5.7849 10.4718 -3.9576 45 1 2.3182 10.5365 -5.3949 46 1 3.9199 11.3092 -5.4743 47 1 3.6862 9.6744 -6.1382 48 1 4.0058 11.3094 -2.5571 49 1 2.3166 13.0199 -0.2446 50 1 1.2520 4.3901 0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134955289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:08 Heat of formation + Delta-G solvation = -71.070478 kcal Electronic energy + Delta-G solvation = -28676.891202 eV Core-core repulsion = 24703.188715 eV Total energy + Delta-G solvation = -3973.702487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66113 -40.77229 -39.06103 -38.29268 -36.03721 -35.11297 -33.97921 -33.19680 -32.15188 -30.55073 -30.23045 -28.20689 -27.56965 -25.84622 -25.58425 -24.39395 -22.96591 -22.08255 -21.26697 -21.11556 -19.37115 -19.26326 -18.13698 -18.08908 -17.15251 -16.97144 -16.62809 -16.31212 -16.02293 -15.60801 -15.47524 -15.44156 -15.26368 -14.89006 -14.52343 -14.42877 -14.32734 -14.01560 -13.89131 -13.57288 -13.33418 -13.22845 -13.09256 -12.91628 -12.87246 -12.78327 -12.63162 -12.51530 -12.21464 -12.16772 -12.05848 -11.99417 -11.78689 -11.52997 -11.38682 -10.90935 -10.88089 -10.69748 -10.59135 -9.87829 -9.37070 -8.93000 -7.90467 -5.15649 0.13959 0.28595 1.43780 1.46111 1.53006 1.84210 2.15617 2.39682 2.57637 2.76593 3.34833 3.44211 3.70876 3.86980 3.94071 3.99078 4.03189 4.07569 4.17222 4.22136 4.34715 4.41383 4.42708 4.45218 4.46485 4.58693 4.68870 4.73832 4.74886 4.76685 4.82109 4.86590 4.94868 4.97958 5.01153 5.07149 5.12275 5.20862 5.28283 5.38238 5.39321 5.46989 5.50252 5.54830 5.65094 5.76308 6.22659 6.32823 6.76468 6.83855 7.38407 7.50044 8.19167 8.38480 9.33483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010064 B = 0.002722 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.632651 B =10284.215973 C =11884.627046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.291 3.709 4 C -0.187 4.187 5 C -0.031 4.031 6 C -0.162 4.162 7 C -0.050 4.050 8 C -0.123 4.123 9 C 0.504 3.496 10 O -0.590 6.590 11 N -0.708 5.708 12 C 0.146 3.854 13 H 0.044 0.956 14 C -0.150 4.150 15 C -0.118 4.118 16 C 0.163 3.837 17 H 0.046 0.954 18 C -0.157 4.157 19 N -0.732 5.732 20 C -0.223 4.223 21 H 0.071 0.929 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.961 3.039 25 H -0.294 1.294 26 H -0.298 1.298 27 H -0.268 1.268 28 C 0.129 3.871 29 N -0.558 5.558 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.051 0.949 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.412 0.588 40 H 0.038 0.962 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.369 0.631 49 H 0.247 0.753 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -25.099 -5.593 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.112 3.888 4 C -0.207 4.207 5 C -0.056 4.056 6 C -0.165 4.165 7 C -0.088 4.088 8 C -0.162 4.162 9 C 0.292 3.708 10 O -0.471 6.471 11 N -0.360 5.360 12 C 0.041 3.959 13 H 0.062 0.938 14 C -0.208 4.208 15 C -0.156 4.156 16 C 0.056 3.944 17 H 0.064 0.936 18 C -0.217 4.217 19 N -0.372 5.372 20 C -0.355 4.355 21 H 0.089 0.911 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.791 3.209 25 H -0.222 1.222 26 H -0.224 1.224 27 H -0.192 1.192 28 C -0.026 4.026 29 N -0.281 5.281 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.070 0.930 33 H 0.180 0.820 34 H 0.189 0.811 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.249 0.751 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.201 0.799 49 H 0.055 0.945 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.068 -25.125 -4.873 26.090 hybrid contribution -0.584 1.007 0.633 1.325 sum 4.483 -24.118 -4.240 24.895 Atomic orbital electron populations 1.23003 0.76208 1.04502 1.01967 1.86208 1.24042 1.24552 1.88026 1.20241 0.90430 0.84749 0.93343 1.21356 0.91386 1.00647 1.07347 1.21666 1.01882 0.89784 0.92232 1.20687 0.94374 0.96438 1.04980 1.20057 1.01461 0.91359 0.95940 1.21648 1.03259 0.92324 0.99001 1.21292 0.77479 0.88674 0.83387 1.90711 1.55100 1.68057 1.33196 1.45904 1.62980 1.18293 1.08782 1.20768 0.93090 0.83359 0.98692 0.93815 1.22067 0.94409 1.02462 1.01893 1.22065 0.95690 1.01102 0.96743 1.20528 0.93905 0.92349 0.87661 0.93633 1.22317 1.00157 1.00842 0.98361 1.42616 1.09449 1.42664 1.42439 1.19506 0.89052 1.13643 1.13297 0.91119 1.25437 1.01146 0.99706 1.00873 1.69806 1.34984 1.25829 1.31569 0.85309 0.81074 0.76161 0.78332 1.22208 1.22441 1.19235 1.22531 0.93183 0.93525 0.93400 1.67302 1.41724 0.99274 1.19835 0.92781 0.85920 0.92988 0.82005 0.81148 0.90062 0.92152 0.87892 0.85645 0.75111 0.94242 0.89943 0.91674 0.87562 0.90998 0.95235 0.94093 0.90489 0.79946 0.94459 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 113.37 1.18 1.76 16 2 O -0.32 -6.49 10.48 -89.89 -0.94 -7.43 16 3 C 0.29 6.28 7.49 84.79 0.63 6.92 16 4 C -0.19 -3.10 10.04 22.47 0.23 -2.88 16 5 C -0.03 -0.46 9.85 22.44 0.22 -0.24 16 6 C -0.16 -3.06 5.15 -19.77 -0.10 -3.17 16 7 C -0.05 -1.06 4.66 29.85 0.14 -0.92 16 8 C -0.12 -2.38 5.68 29.85 0.17 -2.21 16 9 C 0.50 14.90 7.79 87.66 0.68 15.58 16 10 O -0.59 -24.17 15.64 -3.01 -0.05 -24.21 16 11 N -0.71 -18.22 4.45 -442.53 -1.97 -20.19 16 12 C 0.15 4.48 2.52 44.99 0.11 4.60 16 13 H 0.04 1.92 7.05 -2.39 -0.02 1.90 16 14 C -0.15 -3.79 9.48 71.98 0.68 -3.11 16 15 C -0.12 -3.23 4.29 30.60 0.13 -3.10 16 16 C 0.16 5.83 2.84 44.99 0.13 5.96 16 17 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 18 C -0.16 -5.04 9.49 71.98 0.68 -4.36 16 19 N -0.73 -36.01 4.49 -322.94 -1.45 -37.46 16 20 C -0.22 -12.40 9.93 84.03 0.83 -11.56 16 21 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 24 Si 0.96 47.88 29.55 68.60 2.03 49.90 16 25 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 26 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 28 C 0.13 2.82 10.85 84.63 0.92 3.73 16 29 N -0.56 -13.26 9.22 -308.96 -2.85 -16.11 16 30 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 36 H 0.06 1.60 8.05 -2.39 -0.02 1.58 16 37 H 0.10 1.85 8.14 -2.38 -0.02 1.84 16 38 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 7.38 8.60 -92.71 -0.80 6.58 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 48 H 0.37 20.01 7.80 -92.71 -0.72 19.29 16 49 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 50 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -79.20 417.35 1.57 -77.63 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.59 Total: 36.19 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 7.11 Total: 2.77 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -5.98 Total: -134.85 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.99 Total: -31.64 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -79.20 1.57 -77.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134955289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.561 kcal (2) G-P(sol) polarization free energy of solvation -79.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds