Wall clock time and date at job start Tue Mar 31 2020 19:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47123 * 2 1 4 4 O 1.42893 * 109.47748 * 120.00081 * 2 1 3 5 5 C 1.35664 * 117.00534 * 154.93544 * 4 2 1 6 6 C 1.38946 * 120.57735 * 5.52112 * 5 4 2 7 7 N 1.31628 * 120.79385 * 180.02562 * 6 5 4 8 8 C 1.31899 * 122.15109 * 359.97438 * 7 6 5 9 9 C 1.37975 * 121.07314 * 359.97438 * 8 7 6 10 10 C 1.39952 * 119.06660 * 0.02601 * 9 8 7 11 11 C 1.47840 * 120.95903 * 179.72920 * 10 9 8 12 12 O 1.21551 * 119.99595 * 179.97438 * 11 10 9 13 13 N 1.34769 * 120.00246 * 359.97438 * 11 10 9 14 14 C 1.46503 * 120.00114 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47260 * 35.00004 * 14 13 11 16 16 C 1.52996 * 109.47216 * 274.99807 * 14 13 11 17 17 C 1.53008 * 109.46925 * 154.99974 * 14 13 11 18 18 C 1.52998 * 109.47103 * 295.00103 * 17 14 13 19 19 H 1.08996 * 109.47297 * 55.00307 * 18 17 14 20 20 C 1.53000 * 109.46865 * 175.00506 * 18 17 14 21 21 N 1.46503 * 109.46985 * 295.00166 * 18 17 14 22 22 C 1.36942 * 119.99764 * 155.00366 * 21 18 17 23 23 H 1.07999 * 119.99922 * 0.02562 * 22 21 18 24 24 C 1.38809 * 119.99535 * 179.97438 * 22 21 18 25 25 N 1.31621 * 120.00576 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99674 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46960 * 90.00180 * 26 24 22 28 28 H 1.48498 * 109.46993 * 209.99866 * 26 24 22 29 29 H 1.48499 * 109.47161 * 330.00281 * 26 24 22 30 30 H 1.09003 * 109.46874 * 299.99331 * 1 2 3 31 31 H 1.08994 * 109.47268 * 59.99715 * 1 2 3 32 32 H 1.09005 * 109.46746 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47281 * 240.00500 * 2 1 3 34 34 H 1.08999 * 109.47239 * 300.00779 * 3 2 1 35 35 H 1.09003 * 109.46700 * 60.00562 * 3 2 1 36 36 H 1.09001 * 109.47406 * 179.97438 * 3 2 1 37 37 H 1.08004 * 119.60081 * 359.97438 * 6 5 4 38 38 H 1.08001 * 119.46937 * 180.02562 * 8 7 6 39 39 H 1.07993 * 120.46576 * 180.02562 * 9 8 7 40 40 H 0.97001 * 120.00043 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.47264 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.47166 * 300.00254 * 16 14 13 43 43 H 1.09004 * 109.46858 * 60.00137 * 16 14 13 44 44 H 1.08997 * 109.46819 * 55.00466 * 17 14 13 45 45 H 1.09004 * 109.46619 * 175.00120 * 17 14 13 46 46 H 1.09006 * 109.46886 * 299.99618 * 20 18 17 47 47 H 1.08996 * 109.47325 * 59.99818 * 20 18 17 48 48 H 1.09004 * 109.46901 * 180.02562 * 20 18 17 49 49 H 0.96996 * 119.99906 * 335.00047 * 21 18 17 50 50 H 0.96999 * 120.00130 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2440 -1.2249 1.0974 6 6 4.0428 -1.0303 -0.0227 7 7 5.2441 -1.5636 -0.0946 8 6 5.7449 -2.2993 0.8789 9 6 5.0236 -2.5448 2.0292 10 6 3.7404 -2.0009 2.1563 11 6 2.9287 -2.2422 3.3681 12 8 1.8164 -1.7607 3.4603 13 7 3.4219 -2.9958 4.3706 14 6 2.6173 -3.2354 5.5712 15 1 1.5659 -3.3129 5.2944 16 6 2.8028 -2.0739 6.5496 17 6 3.0673 -4.5384 6.2351 18 6 2.7665 -5.7152 5.3048 19 1 3.2306 -5.5391 4.3344 20 6 3.3279 -7.0022 5.9125 21 7 1.3171 -5.8464 5.1363 22 6 0.8097 -6.4429 4.0129 23 1 1.4779 -6.8169 3.2513 24 6 -0.5636 -6.5677 3.8536 25 7 -1.3780 -6.1133 4.7824 26 14 -1.2559 -7.3806 2.3208 27 1 -1.4009 -8.8396 2.5569 28 1 -2.5843 -6.7956 2.0073 29 1 -0.3330 -7.1531 1.1800 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4426 0.0005 37 1 3.6733 -0.4350 -0.8446 38 1 6.7359 -2.7156 0.7743 39 1 5.4434 -3.1482 2.8204 40 1 4.3094 -3.3803 4.2969 41 1 2.2038 -2.2519 7.4427 42 1 3.8542 -1.9964 6.8264 43 1 2.4822 -1.1457 6.0766 44 1 4.1386 -4.4949 6.4314 45 1 2.5308 -4.6716 7.1746 46 1 4.4063 -6.9045 6.0379 47 1 2.8638 -7.1783 6.8829 48 1 3.1140 -7.8405 5.2495 49 1 0.7171 -5.5109 5.8205 50 1 -2.3376 -6.2009 4.6712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135069599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:42 Heat of formation + Delta-G solvation = -34.786449 kcal Electronic energy + Delta-G solvation = -30181.396756 eV Core-core repulsion = 26209.267662 eV Total energy + Delta-G solvation = -3972.129093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05339 -39.23616 -38.47956 -36.74614 -34.43262 -33.61129 -32.73240 -31.92044 -30.38694 -30.19781 -28.56288 -27.46724 -26.30619 -24.94857 -23.88870 -23.54842 -21.61429 -21.29739 -20.32622 -19.69133 -18.61904 -17.59647 -17.08012 -16.94282 -15.79646 -15.62382 -15.47855 -14.88781 -14.67079 -14.42415 -14.34647 -13.95678 -13.87406 -13.69439 -13.39056 -13.26115 -12.97366 -12.76169 -12.65717 -12.51661 -12.24946 -12.12245 -11.99596 -11.93109 -11.71069 -11.57236 -11.22641 -11.04798 -10.98532 -10.80760 -10.58732 -10.40109 -10.19922 -10.02155 -9.86752 -9.82201 -9.58360 -9.33338 -8.84189 -8.69064 -8.51295 -6.88198 -5.69281 -2.96993 0.66494 1.00132 2.94637 3.12652 3.34916 3.47211 3.52414 3.54025 3.83667 4.22547 4.44467 4.54705 4.63550 4.65495 4.68490 4.76412 4.86175 5.06894 5.16255 5.24696 5.33835 5.43189 5.47809 5.50880 5.57673 5.62842 5.65505 5.68007 5.71581 5.74650 5.91733 5.92081 5.97323 6.03949 6.09621 6.15820 6.29918 6.31627 6.39028 6.46572 6.59545 6.74615 6.83925 6.95690 7.09798 7.18665 7.71717 7.75865 7.81575 8.49112 8.57579 9.60534 10.17845 10.52017 11.53509 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.004158 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.958220 B = 6733.032622 C = 7984.176316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 C -0.180 4.180 4 O -0.265 6.265 5 C 0.138 3.862 6 C 0.007 3.993 7 N -0.436 5.436 8 C 0.047 3.953 9 C -0.099 4.099 10 C -0.122 4.122 11 C 0.558 3.442 12 O -0.503 6.503 13 N -0.712 5.712 14 C 0.145 3.855 15 H 0.107 0.893 16 C -0.161 4.161 17 C -0.131 4.131 18 C 0.171 3.829 19 H 0.045 0.955 20 C -0.165 4.165 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.066 0.934 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.901 3.099 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.391 0.609 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.034 0.966 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.267 12.988 -5.361 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 C -0.237 4.237 4 O -0.175 6.175 5 C 0.087 3.913 6 C -0.152 4.152 7 N -0.146 5.146 8 C -0.109 4.109 9 C -0.120 4.120 10 C -0.133 4.133 11 C 0.343 3.657 12 O -0.377 6.377 13 N -0.364 5.364 14 C 0.042 3.958 15 H 0.125 0.875 16 C -0.219 4.219 17 C -0.169 4.169 18 C 0.061 3.939 19 H 0.063 0.937 20 C -0.226 4.226 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.084 0.916 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.210 1.210 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.701 13.428 -6.007 20.103 hybrid contribution -0.577 -0.819 -0.118 1.008 sum 13.124 12.609 -6.124 19.203 Atomic orbital electron populations 1.21829 0.91766 1.03905 1.03015 1.22613 0.96415 0.92572 0.87177 1.22407 1.01795 0.95994 1.03534 1.86467 1.27243 1.66087 1.37659 1.20142 0.86127 0.91271 0.93763 1.22993 0.91392 1.03305 0.97529 1.67330 1.12041 1.06121 1.29116 1.22518 1.00727 0.97995 0.89633 1.22257 0.92751 0.97574 0.99409 1.20017 0.95894 1.01432 0.95989 1.17755 0.86062 0.79678 0.82187 1.90852 1.18551 1.48832 1.79453 1.45836 1.19714 1.52439 1.18421 1.21041 0.98067 0.93394 0.83326 0.87545 1.22182 1.01101 0.99149 0.99465 1.22175 1.00397 0.94486 0.99891 1.20220 0.87067 0.91023 0.95554 0.93712 1.22460 0.97946 1.00952 1.01192 1.42390 0.99511 1.71022 1.23242 1.19143 0.90229 1.30106 0.96979 0.91585 1.24673 0.96073 1.01840 0.98108 1.69643 1.02361 1.51788 1.34148 0.86277 0.78493 0.78927 0.83047 1.21846 1.21804 1.20960 0.91044 0.90565 0.91146 0.90902 0.90740 0.91064 0.92049 0.81953 0.82071 0.83782 0.77456 0.91685 0.93163 0.92519 0.92061 0.90538 0.94730 0.93518 0.92931 0.78328 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.56 37.15 0.36 -1.25 16 2 C 0.07 0.76 2.85 -26.73 -0.08 0.69 16 3 C -0.18 -1.58 9.18 37.16 0.34 -1.24 16 4 O -0.26 -4.14 8.03 -39.88 -0.32 -4.46 16 5 C 0.14 2.03 6.64 -38.53 -0.26 1.77 16 6 C 0.01 0.09 9.44 -17.38 -0.16 -0.07 16 7 N -0.44 -5.43 10.32 -13.17 -0.14 -5.56 16 8 C 0.05 0.51 11.16 -17.62 -0.20 0.31 16 9 C -0.10 -1.12 9.61 -39.04 -0.38 -1.49 16 10 C -0.12 -1.82 5.92 -104.53 -0.62 -2.44 16 11 C 0.56 9.87 7.75 -12.34 -0.10 9.77 16 12 O -0.50 -11.05 14.97 -15.87 -0.24 -11.29 16 13 N -0.71 -10.69 4.41 -54.75 -0.24 -10.93 16 14 C 0.15 2.38 2.52 -67.93 -0.17 2.21 16 15 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 16 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 17 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 18 C 0.17 3.24 2.84 -67.93 -0.19 3.05 16 19 H 0.04 0.87 7.56 -51.93 -0.39 0.48 16 20 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 21 N -0.72 -17.77 4.49 -53.43 -0.24 -18.01 16 22 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 23 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 26 Si 0.90 23.18 29.55 -169.99 -5.02 18.15 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.70 6.33 -51.92 -0.33 0.37 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.53 6.94 -51.93 -0.36 0.17 16 37 H 0.16 1.60 5.46 -52.48 -0.29 1.32 16 38 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.16 6.53 -52.49 -0.34 0.82 16 40 H 0.39 4.56 6.74 -40.82 -0.28 4.29 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 406.78 15.07 6.13 6.13 Total: -1.00 -35.42 406.78 -8.58 -44.00 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.14 Total: 12.20 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.10 Total: -2.30 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.11 Total: -62.44 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.56 Total: -15.75 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.42 -8.58 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135069599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.218 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds