Wall clock time and date at job start Tue Mar 31 2020 19:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47123 * 2 1 4 4 O 1.42893 * 109.47748 * 120.00081 * 2 1 3 5 5 C 1.35664 * 117.00534 * 154.93544 * 4 2 1 6 6 C 1.38946 * 120.57735 * 5.52112 * 5 4 2 7 7 N 1.31628 * 120.79385 * 180.02562 * 6 5 4 8 8 C 1.31899 * 122.15109 * 359.97438 * 7 6 5 9 9 C 1.37975 * 121.07314 * 359.97438 * 8 7 6 10 10 C 1.39952 * 119.06660 * 0.02601 * 9 8 7 11 11 C 1.47840 * 120.95903 * 179.72920 * 10 9 8 12 12 O 1.21551 * 119.99595 * 179.97438 * 11 10 9 13 13 N 1.34769 * 120.00246 * 359.97438 * 11 10 9 14 14 C 1.46503 * 120.00114 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.47260 * 35.00004 * 14 13 11 16 16 C 1.52996 * 109.47216 * 274.99807 * 14 13 11 17 17 C 1.53008 * 109.46925 * 154.99974 * 14 13 11 18 18 C 1.52998 * 109.47103 * 295.00103 * 17 14 13 19 19 H 1.08996 * 109.47297 * 55.00307 * 18 17 14 20 20 C 1.53000 * 109.46865 * 175.00506 * 18 17 14 21 21 N 1.46503 * 109.46985 * 295.00166 * 18 17 14 22 22 C 1.36942 * 119.99764 * 155.00366 * 21 18 17 23 23 H 1.07999 * 119.99922 * 0.02562 * 22 21 18 24 24 C 1.38809 * 119.99535 * 179.97438 * 22 21 18 25 25 N 1.31621 * 120.00576 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99674 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46960 * 90.00180 * 26 24 22 28 28 H 1.48498 * 109.46993 * 209.99866 * 26 24 22 29 29 H 1.48499 * 109.47161 * 330.00281 * 26 24 22 30 30 H 1.09003 * 109.46874 * 299.99331 * 1 2 3 31 31 H 1.08994 * 109.47268 * 59.99715 * 1 2 3 32 32 H 1.09005 * 109.46746 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47281 * 240.00500 * 2 1 3 34 34 H 1.08999 * 109.47239 * 300.00779 * 3 2 1 35 35 H 1.09003 * 109.46700 * 60.00562 * 3 2 1 36 36 H 1.09001 * 109.47406 * 179.97438 * 3 2 1 37 37 H 1.08004 * 119.60081 * 359.97438 * 6 5 4 38 38 H 1.08001 * 119.46937 * 180.02562 * 8 7 6 39 39 H 1.07993 * 120.46576 * 180.02562 * 9 8 7 40 40 H 0.97001 * 120.00043 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.47264 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.47166 * 300.00254 * 16 14 13 43 43 H 1.09004 * 109.46858 * 60.00137 * 16 14 13 44 44 H 1.08997 * 109.46819 * 55.00466 * 17 14 13 45 45 H 1.09004 * 109.46619 * 175.00120 * 17 14 13 46 46 H 1.09006 * 109.46886 * 299.99618 * 20 18 17 47 47 H 1.08996 * 109.47325 * 59.99818 * 20 18 17 48 48 H 1.09004 * 109.46901 * 180.02562 * 20 18 17 49 49 H 0.96996 * 119.99906 * 335.00047 * 21 18 17 50 50 H 0.96999 * 120.00130 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2440 -1.2249 1.0974 6 6 4.0428 -1.0303 -0.0227 7 7 5.2441 -1.5636 -0.0946 8 6 5.7449 -2.2993 0.8789 9 6 5.0236 -2.5448 2.0292 10 6 3.7404 -2.0009 2.1563 11 6 2.9287 -2.2422 3.3681 12 8 1.8164 -1.7607 3.4603 13 7 3.4219 -2.9958 4.3706 14 6 2.6173 -3.2354 5.5712 15 1 1.5659 -3.3129 5.2944 16 6 2.8028 -2.0739 6.5496 17 6 3.0673 -4.5384 6.2351 18 6 2.7665 -5.7152 5.3048 19 1 3.2306 -5.5391 4.3344 20 6 3.3279 -7.0022 5.9125 21 7 1.3171 -5.8464 5.1363 22 6 0.8097 -6.4429 4.0129 23 1 1.4779 -6.8169 3.2513 24 6 -0.5636 -6.5677 3.8536 25 7 -1.3780 -6.1133 4.7824 26 14 -1.2559 -7.3806 2.3208 27 1 -1.4009 -8.8396 2.5569 28 1 -2.5843 -6.7956 2.0073 29 1 -0.3330 -7.1531 1.1800 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6765 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4426 0.0005 37 1 3.6733 -0.4350 -0.8446 38 1 6.7359 -2.7156 0.7743 39 1 5.4434 -3.1482 2.8204 40 1 4.3094 -3.3803 4.2969 41 1 2.2038 -2.2519 7.4427 42 1 3.8542 -1.9964 6.8264 43 1 2.4822 -1.1457 6.0766 44 1 4.1386 -4.4949 6.4314 45 1 2.5308 -4.6716 7.1746 46 1 4.4063 -6.9045 6.0379 47 1 2.8638 -7.1783 6.8829 48 1 3.1140 -7.8405 5.2495 49 1 0.7171 -5.5109 5.8205 50 1 -2.3376 -6.2009 4.6712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135069599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:41 Heat of formation + Delta-G solvation = -58.733302 kcal Electronic energy + Delta-G solvation = -30182.435169 eV Core-core repulsion = 26209.267662 eV Total energy + Delta-G solvation = -3973.167507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06559 -40.50721 -39.44564 -38.26213 -36.06541 -34.56537 -34.14230 -33.46060 -31.58473 -31.23677 -30.39746 -28.27170 -27.59607 -26.03028 -25.64001 -24.81009 -22.72998 -22.31532 -21.64827 -21.18152 -19.71787 -19.23227 -18.52985 -17.98442 -16.99140 -16.79377 -16.60530 -16.49514 -15.83495 -15.66913 -15.57521 -15.38444 -15.21469 -15.00142 -14.56872 -14.49771 -14.25070 -14.08288 -13.66003 -13.59878 -13.41065 -13.35631 -13.17553 -13.04786 -12.93701 -12.79805 -12.74899 -12.68414 -12.24846 -12.22626 -12.07499 -11.89031 -11.82343 -11.56789 -11.41808 -11.23405 -10.91868 -10.82646 -10.45712 -9.99569 -9.49044 -8.94783 -7.92965 -5.17808 -0.35823 0.07544 1.39537 1.41956 1.48769 1.92283 2.05386 2.15552 2.54523 2.79843 3.38002 3.41587 3.52799 3.63218 3.67973 3.81820 3.85258 3.93442 4.02025 4.05055 4.12389 4.18244 4.38281 4.44222 4.54907 4.62414 4.66726 4.70666 4.74896 4.75400 4.79907 4.80145 4.83811 4.86773 4.95163 5.05003 5.11721 5.15910 5.20035 5.23926 5.35430 5.42770 5.45991 5.50676 5.63632 5.66545 6.25176 6.30594 6.61526 6.81080 7.32110 7.36211 8.17349 8.36256 9.30941 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.004158 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.958220 B = 6733.032622 C = 7984.176316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 C -0.171 4.171 4 O -0.302 6.302 5 C 0.116 3.884 6 C 0.010 3.990 7 N -0.446 5.446 8 C 0.052 3.948 9 C -0.087 4.087 10 C -0.153 4.153 11 C 0.551 3.449 12 O -0.562 6.562 13 N -0.697 5.697 14 C 0.148 3.852 15 H 0.044 0.956 16 C -0.150 4.150 17 C -0.117 4.117 18 C 0.163 3.837 19 H 0.043 0.957 20 C -0.156 4.156 21 N -0.732 5.732 22 C -0.224 4.224 23 H 0.068 0.932 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.958 3.042 27 H -0.283 1.283 28 H -0.300 1.300 29 H -0.276 1.276 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.184 0.816 38 H 0.202 0.798 39 H 0.178 0.822 40 H 0.411 0.589 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.033 0.967 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.041 0.959 48 H 0.028 0.972 49 H 0.370 0.630 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.203 12.761 -6.100 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.002 3.998 3 C -0.228 4.228 4 O -0.213 6.213 5 C 0.066 3.934 6 C -0.149 4.149 7 N -0.156 5.156 8 C -0.104 4.104 9 C -0.107 4.107 10 C -0.164 4.164 11 C 0.338 3.662 12 O -0.440 6.440 13 N -0.350 5.350 14 C 0.044 3.956 15 H 0.063 0.937 16 C -0.208 4.208 17 C -0.155 4.155 18 C 0.055 3.945 19 H 0.061 0.939 20 C -0.215 4.215 21 N -0.372 5.372 22 C -0.357 4.357 23 H 0.086 0.914 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.788 3.212 27 H -0.210 1.210 28 H -0.227 1.227 29 H -0.201 1.201 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.200 0.800 38 H 0.219 0.781 39 H 0.196 0.804 40 H 0.249 0.751 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.201 0.799 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.739 13.172 -6.749 23.103 hybrid contribution -1.672 -0.742 0.110 1.833 sum 16.067 12.430 -6.639 21.371 Atomic orbital electron populations 1.21874 0.92138 1.02489 1.03935 1.22922 0.96276 0.93912 0.86648 1.22348 1.01893 0.94336 1.04236 1.86437 1.28131 1.66840 1.39869 1.20456 0.86320 0.91932 0.94735 1.23235 0.91163 1.03269 0.97228 1.67425 1.11839 1.06477 1.29846 1.23197 1.01906 0.96667 0.88584 1.22613 0.90919 0.96596 1.00541 1.20084 0.97465 1.03609 0.95265 1.18308 0.85671 0.79025 0.83246 1.90818 1.21222 1.51286 1.80720 1.45684 1.20231 1.51547 1.17525 1.20847 0.95106 0.95398 0.84289 0.93724 1.22076 1.03344 0.96803 0.98621 1.22089 1.03343 0.91598 0.98504 1.20539 0.83707 0.93546 0.96709 0.93942 1.22303 1.00682 0.98552 1.00006 1.42612 1.02102 1.70578 1.21941 1.19487 0.90338 1.28212 0.97616 0.91358 1.25404 0.96776 1.03794 1.00973 1.69796 1.02004 1.54123 1.36061 0.85352 0.77353 0.78226 0.80222 1.20988 1.22692 1.20147 0.92643 0.87058 0.93668 0.89308 0.87851 0.92448 0.91740 0.79972 0.78107 0.80438 0.75150 0.91094 0.89660 0.94768 0.87100 0.90468 0.90207 0.93958 0.95256 0.79867 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.56 71.98 0.69 -2.69 16 2 C 0.06 1.32 2.85 30.59 0.09 1.41 16 3 C -0.17 -2.91 9.18 71.98 0.66 -2.25 16 4 O -0.30 -10.01 8.03 -69.54 -0.56 -10.57 16 5 C 0.12 3.47 6.64 22.95 0.15 3.62 16 6 C 0.01 0.24 9.44 84.89 0.80 1.04 16 7 N -0.45 -9.97 10.32 -195.57 -2.02 -11.99 16 8 C 0.05 0.93 11.16 84.62 0.94 1.88 16 9 C -0.09 -1.71 9.61 22.62 0.22 -1.49 16 10 C -0.15 -4.53 5.92 -19.81 -0.12 -4.65 16 11 C 0.55 20.09 7.75 86.79 0.67 20.76 16 12 O -0.56 -26.66 14.97 16.38 0.25 -26.42 16 13 N -0.70 -20.37 4.41 -445.41 -1.96 -22.34 16 14 C 0.15 4.82 2.52 44.99 0.11 4.94 16 15 H 0.04 2.05 7.05 -2.39 -0.02 2.03 16 16 C -0.15 -4.05 9.48 71.98 0.68 -3.37 16 17 C -0.12 -3.26 4.29 30.60 0.13 -3.13 16 18 C 0.16 5.91 2.84 44.99 0.13 6.04 16 19 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 20 C -0.16 -4.98 9.49 71.98 0.68 -4.30 16 21 N -0.73 -36.80 4.49 -322.94 -1.45 -38.25 16 22 C -0.22 -12.80 9.93 84.03 0.83 -11.96 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 25 N -0.97 -62.06 13.06 21.65 0.28 -61.78 16 26 Si 0.96 48.87 29.55 68.60 2.03 50.90 16 27 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 28 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 29 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.09 1.68 6.33 -2.38 -0.02 1.66 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.05 6.94 -2.39 -0.02 1.04 16 37 H 0.18 3.32 5.46 -2.91 -0.02 3.31 16 38 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.18 2.08 6.53 -2.91 -0.02 2.07 16 40 H 0.41 8.36 6.74 -92.71 -0.62 7.74 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 50 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -84.19 406.78 3.31 -80.88 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.40 Total: 37.93 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 7.15 Total: 1.64 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -5.15 Total: -134.35 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.31 Total: -36.99 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal Total: -84.19 3.31 -80.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135069599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.145 kcal (2) G-P(sol) polarization free energy of solvation -84.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds