Wall clock time and date at job start Tue Mar 31 2020 19:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 O 1.42901 * 109.47191 * 120.00534 * 2 1 3 5 5 C 1.35659 * 117.00056 * 85.03849 * 4 2 1 6 6 C 1.38944 * 120.58080 * 354.57893 * 5 4 2 7 7 N 1.31626 * 120.79491 * 180.02562 * 6 5 4 8 8 C 1.31909 * 122.14795 * 359.97438 * 7 6 5 9 9 C 1.37965 * 121.07232 * 359.97438 * 8 7 6 10 10 C 1.39952 * 119.07260 * 0.02562 * 9 8 7 11 11 C 1.47838 * 120.96501 * 179.97438 * 10 9 8 12 12 O 1.21552 * 119.99961 * 179.97438 * 11 10 9 13 13 N 1.34772 * 119.99874 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99877 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47244 * 325.00449 * 14 13 11 16 16 C 1.53000 * 109.47084 * 85.00170 * 14 13 11 17 17 C 1.53004 * 109.47352 * 204.99900 * 14 13 11 18 18 C 1.53005 * 109.46856 * 65.00064 * 17 14 13 19 19 H 1.09000 * 109.46944 * 54.99875 * 18 17 14 20 20 C 1.52999 * 109.46890 * 174.99993 * 18 17 14 21 21 N 1.46496 * 109.47031 * 295.00445 * 18 17 14 22 22 C 1.36940 * 120.00059 * 155.00322 * 21 18 17 23 23 H 1.07997 * 120.00036 * 359.97438 * 22 21 18 24 24 C 1.38816 * 119.99973 * 179.97438 * 22 21 18 25 25 N 1.31616 * 119.99918 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99654 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47360 * 59.99855 * 26 24 22 28 28 H 1.48501 * 109.47024 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47384 * 299.99612 * 26 24 22 30 30 H 1.08998 * 109.46783 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47130 * 299.99216 * 1 2 3 32 32 H 1.08998 * 109.46885 * 59.99621 * 1 2 3 33 33 H 1.09006 * 109.46862 * 240.00821 * 2 1 3 34 34 H 1.09000 * 109.47054 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47339 * 300.00396 * 3 2 1 36 36 H 1.09006 * 109.46654 * 60.00693 * 3 2 1 37 37 H 1.08003 * 119.60411 * 0.02562 * 6 5 4 38 38 H 1.07996 * 119.46394 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.46763 * 179.73003 * 9 8 7 40 40 H 0.96997 * 120.00285 * 359.97438 * 13 11 10 41 41 H 1.09003 * 109.47215 * 59.99861 * 16 14 13 42 42 H 1.09001 * 109.47374 * 179.97438 * 16 14 13 43 43 H 1.09007 * 109.47045 * 300.00275 * 16 14 13 44 44 H 1.08997 * 109.46923 * 185.00239 * 17 14 13 45 45 H 1.08997 * 109.46945 * 305.00346 * 17 14 13 46 46 H 1.08992 * 109.47364 * 299.99990 * 20 18 17 47 47 H 1.08994 * 109.46857 * 60.00593 * 20 18 17 48 48 H 1.08999 * 109.46741 * 180.02562 * 20 18 17 49 49 H 0.97000 * 120.00316 * 334.99026 * 21 18 17 50 50 H 0.97000 * 119.99668 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1131 -2.0244 1.0975 6 6 1.6648 -2.7124 -0.0233 7 7 1.7659 -4.0228 -0.0946 8 6 2.2908 -4.7404 0.8798 9 6 2.7630 -4.1423 2.0299 10 6 2.6793 -2.7510 2.1564 11 6 3.1719 -2.0667 3.3708 12 8 3.0909 -0.8573 3.4620 13 7 3.7108 -2.7838 4.3766 14 6 4.1994 -2.1056 5.5798 15 1 4.6266 -1.1412 5.3051 16 6 3.0374 -1.8905 6.5515 17 6 5.2722 -2.9662 6.2503 18 6 6.4871 -3.0779 5.3269 19 1 6.8343 -2.0794 5.0610 20 6 7.6068 -3.8325 6.0464 21 7 6.1114 -3.8040 4.1113 22 6 6.8117 -3.6057 2.9513 23 1 7.6406 -2.9138 2.9325 24 6 6.4560 -4.2942 1.7996 25 7 5.4460 -5.1379 1.8226 26 14 7.4108 -4.0232 0.2171 27 1 8.8342 -4.3894 0.4289 28 1 6.8361 -4.8700 -0.8590 29 1 7.3207 -2.5942 -0.1769 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.2282 -2.1654 -0.8458 38 1 2.3527 -5.8136 0.7753 39 1 3.1870 -4.7397 2.8234 40 1 3.7751 -3.7489 4.3040 41 1 2.6101 -2.8549 6.8262 42 1 3.4010 -1.3863 7.4469 43 1 2.2731 -1.2773 6.0738 44 1 5.5721 -2.5051 7.1913 45 1 4.8709 -3.9608 6.4447 46 1 7.8862 -3.2922 6.9508 47 1 7.2595 -4.8309 6.3122 48 1 8.4724 -3.9116 5.3888 49 1 5.3667 -4.4254 4.1281 50 1 5.1978 -5.6192 1.0179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135069600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:45 Heat of formation + Delta-G solvation = -27.536447 kcal Electronic energy + Delta-G solvation = -31338.618627 eV Core-core repulsion = 27366.803918 eV Total energy + Delta-G solvation = -3971.814709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.47493 -38.94950 -37.93726 -36.68620 -34.16092 -33.23722 -32.58703 -31.67171 -30.15863 -29.65320 -28.51409 -27.27335 -26.33835 -24.34995 -23.70691 -23.31817 -21.25476 -20.94097 -20.21951 -19.67744 -18.06770 -17.21730 -16.99616 -16.43321 -15.50433 -15.37468 -14.94043 -14.80670 -14.31729 -14.07704 -14.00974 -13.77799 -13.66170 -13.39238 -13.02887 -12.91078 -12.83790 -12.63442 -12.34110 -12.30768 -12.13536 -11.96968 -11.85978 -11.73670 -11.66560 -11.41205 -11.02097 -10.94576 -10.84575 -10.74723 -10.71636 -10.36894 -10.28707 -9.93573 -9.71217 -9.52206 -9.12569 -8.89847 -8.81108 -8.31894 -7.91799 -6.96398 -5.86256 -3.07798 1.38354 1.71905 3.37960 3.41382 3.46718 3.48939 3.61657 3.83275 4.47370 4.56528 4.75675 4.86484 4.91655 5.07085 5.11992 5.16737 5.33934 5.39653 5.44252 5.50888 5.52563 5.54467 5.59636 5.68919 5.70323 5.79445 5.87552 5.95902 5.98793 6.01206 6.08922 6.12288 6.15818 6.18903 6.23252 6.33613 6.37622 6.46477 6.53943 6.58327 6.59877 6.84173 7.03716 7.05459 7.21701 7.65177 7.66289 8.24100 8.35157 8.41681 8.98560 9.46697 9.98848 10.34859 11.36289 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005443 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.143103 B = 5142.588771 C = 6563.209734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.271 6.271 5 C 0.130 3.870 6 C -0.017 4.017 7 N -0.441 5.441 8 C 0.052 3.948 9 C -0.029 4.029 10 C -0.132 4.132 11 C 0.574 3.426 12 O -0.539 6.539 13 N -0.695 5.695 14 C 0.152 3.848 15 H 0.083 0.917 16 C -0.162 4.162 17 C -0.133 4.133 18 C 0.169 3.831 19 H 0.048 0.952 20 C -0.163 4.163 21 N -0.715 5.715 22 C -0.221 4.221 23 H 0.066 0.934 24 C -0.009 4.009 25 N -0.927 5.927 26 Si 0.898 3.102 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.401 0.599 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.045 0.955 48 H 0.052 0.948 49 H 0.376 0.624 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 5.102 3.251 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 C -0.202 4.202 4 O -0.182 6.182 5 C 0.080 3.920 6 C -0.176 4.176 7 N -0.151 5.151 8 C -0.106 4.106 9 C -0.051 4.051 10 C -0.143 4.143 11 C 0.361 3.639 12 O -0.417 6.417 13 N -0.349 5.349 14 C 0.047 3.953 15 H 0.101 0.899 16 C -0.221 4.221 17 C -0.172 4.172 18 C 0.059 3.941 19 H 0.066 0.934 20 C -0.223 4.223 21 N -0.357 5.357 22 C -0.352 4.352 23 H 0.084 0.916 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.730 3.270 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.240 0.760 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.211 0.789 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.020 5.764 2.631 11.023 hybrid contribution 0.895 -0.302 -0.610 1.125 sum -8.125 5.461 2.022 9.996 Atomic orbital electron populations 1.22381 0.95229 1.02983 1.02957 1.22485 0.94195 0.94194 0.87928 1.21794 1.02411 0.93394 1.02584 1.86389 1.79612 1.15173 1.37011 1.20067 0.93764 0.83878 0.94291 1.22677 1.06129 0.91241 0.97532 1.67244 1.11953 1.06727 1.29203 1.22375 0.98274 1.00208 0.89695 1.22246 0.90692 0.92470 0.99655 1.19764 1.05161 0.93650 0.95761 1.17713 0.77462 0.86558 0.82157 1.90726 1.57065 1.13488 1.80464 1.45834 1.61169 1.10911 1.16940 1.20783 0.93119 0.97104 0.84314 0.89909 1.22209 0.99232 1.01535 0.99075 1.22212 0.96339 0.99849 0.98805 1.20294 0.91516 0.95278 0.87019 0.93403 1.22409 1.00683 1.00246 0.98958 1.42439 1.37838 1.50046 1.05409 1.19164 1.09488 1.19012 0.87502 0.91607 1.24475 0.98823 0.99782 0.97319 1.69465 1.29210 1.30619 1.28287 0.86385 0.79333 0.77328 0.83932 1.21560 1.21682 1.21697 0.91910 0.91383 0.91181 0.91135 0.91540 0.90915 0.91375 0.83032 0.82709 0.82931 0.76031 0.92848 0.92175 0.92374 0.90784 0.91754 0.94579 0.93591 0.92901 0.78874 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.18 37.16 0.34 -1.65 16 2 C 0.07 0.94 2.85 -26.73 -0.08 0.86 16 3 C -0.14 -1.74 9.56 37.16 0.36 -1.39 16 4 O -0.27 -5.04 8.03 -39.87 -0.32 -5.36 16 5 C 0.13 2.50 6.64 -38.53 -0.26 2.25 16 6 C -0.02 -0.30 9.44 -17.38 -0.16 -0.47 16 7 N -0.44 -8.16 10.32 -13.17 -0.14 -8.30 16 8 C 0.05 0.94 11.16 -17.62 -0.20 0.75 16 9 C -0.03 -0.55 7.95 -39.04 -0.31 -0.86 16 10 C -0.13 -2.67 5.92 -104.53 -0.62 -3.28 16 11 C 0.57 11.98 7.75 -12.33 -0.10 11.88 16 12 O -0.54 -12.48 14.97 -15.87 -0.24 -12.72 16 13 N -0.70 -12.59 3.76 -54.75 -0.21 -12.79 16 14 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 15 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 16 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 17 C -0.13 -1.95 4.43 -26.73 -0.12 -2.07 16 18 C 0.17 3.06 2.89 -67.93 -0.20 2.86 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 C -0.16 -2.72 9.49 37.16 0.35 -2.37 16 21 N -0.71 -15.51 3.84 -53.42 -0.21 -15.72 16 22 C -0.22 -5.60 9.93 -15.06 -0.15 -5.75 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -23.26 10.74 55.49 0.60 -22.66 16 26 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.92 6.33 -51.93 -0.33 0.59 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.15 2.22 5.46 -52.48 -0.29 1.94 16 38 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.15 2.84 5.96 -52.49 -0.31 2.53 16 40 H 0.40 7.15 4.65 -40.82 -0.19 6.96 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.38 8.22 5.70 -40.82 -0.23 7.99 16 50 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 398.04 15.07 6.00 6.00 Total: -1.00 -29.45 398.04 -8.57 -38.02 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -7.99 Total: 15.64 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.05 Total: 0.87 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.05 Total: -59.47 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.56 Total: -18.08 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.45 -8.57 -38.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135069600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.484 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds