Wall clock time and date at job start Tue Mar 31 2020 19:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 O 1.42901 * 109.47191 * 120.00534 * 2 1 3 5 5 C 1.35659 * 117.00056 * 85.03849 * 4 2 1 6 6 C 1.38944 * 120.58080 * 354.57893 * 5 4 2 7 7 N 1.31626 * 120.79491 * 180.02562 * 6 5 4 8 8 C 1.31909 * 122.14795 * 359.97438 * 7 6 5 9 9 C 1.37965 * 121.07232 * 359.97438 * 8 7 6 10 10 C 1.39952 * 119.07260 * 0.02562 * 9 8 7 11 11 C 1.47838 * 120.96501 * 179.97438 * 10 9 8 12 12 O 1.21552 * 119.99961 * 179.97438 * 11 10 9 13 13 N 1.34772 * 119.99874 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99877 * 179.97438 * 13 11 10 15 15 H 1.08997 * 109.47244 * 325.00449 * 14 13 11 16 16 C 1.53000 * 109.47084 * 85.00170 * 14 13 11 17 17 C 1.53004 * 109.47352 * 204.99900 * 14 13 11 18 18 C 1.53005 * 109.46856 * 65.00064 * 17 14 13 19 19 H 1.09000 * 109.46944 * 54.99875 * 18 17 14 20 20 C 1.52999 * 109.46890 * 174.99993 * 18 17 14 21 21 N 1.46496 * 109.47031 * 295.00445 * 18 17 14 22 22 C 1.36940 * 120.00059 * 155.00322 * 21 18 17 23 23 H 1.07997 * 120.00036 * 359.97438 * 22 21 18 24 24 C 1.38816 * 119.99973 * 179.97438 * 22 21 18 25 25 N 1.31616 * 119.99918 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99654 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47360 * 59.99855 * 26 24 22 28 28 H 1.48501 * 109.47024 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47384 * 299.99612 * 26 24 22 30 30 H 1.08998 * 109.46783 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47130 * 299.99216 * 1 2 3 32 32 H 1.08998 * 109.46885 * 59.99621 * 1 2 3 33 33 H 1.09006 * 109.46862 * 240.00821 * 2 1 3 34 34 H 1.09000 * 109.47054 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47339 * 300.00396 * 3 2 1 36 36 H 1.09006 * 109.46654 * 60.00693 * 3 2 1 37 37 H 1.08003 * 119.60411 * 0.02562 * 6 5 4 38 38 H 1.07996 * 119.46394 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.46763 * 179.73003 * 9 8 7 40 40 H 0.96997 * 120.00285 * 359.97438 * 13 11 10 41 41 H 1.09003 * 109.47215 * 59.99861 * 16 14 13 42 42 H 1.09001 * 109.47374 * 179.97438 * 16 14 13 43 43 H 1.09007 * 109.47045 * 300.00275 * 16 14 13 44 44 H 1.08997 * 109.46923 * 185.00239 * 17 14 13 45 45 H 1.08997 * 109.46945 * 305.00346 * 17 14 13 46 46 H 1.08992 * 109.47364 * 299.99990 * 20 18 17 47 47 H 1.08994 * 109.46857 * 60.00593 * 20 18 17 48 48 H 1.08999 * 109.46741 * 180.02562 * 20 18 17 49 49 H 0.97000 * 120.00316 * 334.99026 * 21 18 17 50 50 H 0.97000 * 119.99668 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1131 -2.0244 1.0975 6 6 1.6648 -2.7124 -0.0233 7 7 1.7659 -4.0228 -0.0946 8 6 2.2908 -4.7404 0.8798 9 6 2.7630 -4.1423 2.0299 10 6 2.6793 -2.7510 2.1564 11 6 3.1719 -2.0667 3.3708 12 8 3.0909 -0.8573 3.4620 13 7 3.7108 -2.7838 4.3766 14 6 4.1994 -2.1056 5.5798 15 1 4.6266 -1.1412 5.3051 16 6 3.0374 -1.8905 6.5515 17 6 5.2722 -2.9662 6.2503 18 6 6.4871 -3.0779 5.3269 19 1 6.8343 -2.0794 5.0610 20 6 7.6068 -3.8325 6.0464 21 7 6.1114 -3.8040 4.1113 22 6 6.8117 -3.6057 2.9513 23 1 7.6406 -2.9138 2.9325 24 6 6.4560 -4.2942 1.7996 25 7 5.4460 -5.1379 1.8226 26 14 7.4108 -4.0232 0.2171 27 1 8.8342 -4.3894 0.4289 28 1 6.8361 -4.8700 -0.8590 29 1 7.3207 -2.5942 -0.1769 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.2282 -2.1654 -0.8458 38 1 2.3527 -5.8136 0.7753 39 1 3.1870 -4.7397 2.8234 40 1 3.7751 -3.7489 4.3040 41 1 2.6101 -2.8549 6.8262 42 1 3.4010 -1.3863 7.4469 43 1 2.2731 -1.2773 6.0738 44 1 5.5721 -2.5051 7.1913 45 1 4.8709 -3.9608 6.4447 46 1 7.8862 -3.2922 6.9508 47 1 7.2595 -4.8309 6.3122 48 1 8.4724 -3.9116 5.3888 49 1 5.3667 -4.4254 4.1281 50 1 5.1978 -5.6192 1.0179 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135069600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:45 Heat of formation + Delta-G solvation = -43.788547 kcal Electronic energy + Delta-G solvation = -31339.323371 eV Core-core repulsion = 27366.803918 eV Total energy + Delta-G solvation = -3972.519453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89038 -40.40482 -39.28994 -38.22214 -35.75649 -34.45561 -34.17197 -33.20456 -31.63382 -31.04857 -30.12887 -28.21922 -27.58690 -25.80954 -25.53064 -24.66369 -22.63308 -22.15077 -21.66389 -21.16631 -19.43372 -19.07868 -18.38915 -17.85756 -16.95010 -16.64434 -16.53712 -16.39204 -15.80626 -15.54402 -15.44813 -15.24123 -15.12670 -14.80757 -14.45316 -14.30666 -14.15940 -13.96642 -13.56680 -13.51447 -13.32381 -13.30754 -13.16835 -12.97259 -12.90780 -12.78284 -12.66442 -12.58800 -12.28294 -12.18593 -12.01209 -11.82091 -11.70465 -11.58314 -11.39873 -11.08585 -10.89421 -10.51092 -10.30660 -9.82118 -9.31768 -8.76484 -7.83613 -5.01713 -0.11386 0.28808 1.41377 1.46152 1.47265 2.06791 2.15400 2.39135 2.59608 3.00202 3.50455 3.51481 3.66281 3.75269 3.83352 3.91525 3.92710 4.03760 4.08898 4.12756 4.19618 4.37042 4.39866 4.58653 4.67025 4.67835 4.70888 4.77142 4.81067 4.84610 4.85895 4.88593 4.90316 4.95450 5.10247 5.10723 5.15876 5.17920 5.19869 5.23890 5.38170 5.43958 5.62402 5.64233 5.65901 5.79992 6.34933 6.40717 6.73542 6.97181 7.43201 7.49992 8.19330 8.48326 9.36571 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005443 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.143103 B = 5142.588771 C = 6563.209734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.054 3.946 3 C -0.142 4.142 4 O -0.296 6.296 5 C 0.120 3.880 6 C -0.011 4.011 7 N -0.447 5.447 8 C 0.045 3.955 9 C -0.027 4.027 10 C -0.159 4.159 11 C 0.566 3.434 12 O -0.573 6.573 13 N -0.686 5.686 14 C 0.147 3.853 15 H 0.054 0.946 16 C -0.151 4.151 17 C -0.119 4.119 18 C 0.162 3.838 19 H 0.026 0.974 20 C -0.152 4.152 21 N -0.717 5.717 22 C -0.227 4.227 23 H 0.050 0.950 24 C -0.040 4.040 25 N -0.923 5.923 26 Si 0.930 3.070 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.306 1.306 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.181 0.819 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.403 0.597 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.027 0.973 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 4.921 3.992 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.002 4.002 3 C -0.199 4.199 4 O -0.208 6.208 5 C 0.070 3.930 6 C -0.170 4.170 7 N -0.157 5.157 8 C -0.112 4.112 9 C -0.048 4.048 10 C -0.170 4.170 11 C 0.353 3.647 12 O -0.454 6.454 13 N -0.338 5.338 14 C 0.043 3.957 15 H 0.072 0.928 16 C -0.209 4.209 17 C -0.157 4.157 18 C 0.053 3.947 19 H 0.044 0.956 20 C -0.212 4.212 21 N -0.360 5.360 22 C -0.359 4.359 23 H 0.068 0.932 24 C -0.235 4.235 25 N -0.572 5.572 26 Si 0.763 3.237 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.234 1.234 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.198 0.802 38 H 0.191 0.809 39 H 0.170 0.830 40 H 0.242 0.758 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.210 0.790 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.983 5.564 3.410 11.927 hybrid contribution 1.190 -0.144 -0.853 1.471 sum -8.793 5.421 2.557 10.642 Atomic orbital electron populations 1.22330 0.93007 1.03086 1.04277 1.22921 0.96045 0.94516 0.86675 1.21837 1.01187 0.92741 1.04086 1.86372 1.79908 1.14904 1.39566 1.20265 0.93745 0.84530 0.94500 1.23105 1.05161 0.91056 0.97683 1.67318 1.12067 1.07116 1.29222 1.22681 0.97988 1.01142 0.89372 1.22226 0.90750 0.91938 0.99926 1.20008 1.06264 0.94488 0.96265 1.17965 0.77504 0.86356 0.82848 1.90689 1.58712 1.14746 1.81212 1.45874 1.60034 1.10871 1.17045 1.20956 0.94658 0.95946 0.84185 0.92792 1.22104 0.97476 1.02379 0.98963 1.22131 0.93976 1.00680 0.98929 1.20486 0.93728 0.93861 0.86607 0.95636 1.22254 0.98845 1.00662 0.99465 1.42442 1.37512 1.50374 1.05640 1.19160 1.09334 1.18435 0.88981 0.93237 1.24787 0.99804 1.00655 0.98275 1.69506 1.29189 1.30657 1.27848 0.85903 0.78958 0.75956 0.82868 1.21469 1.22128 1.23408 0.92385 0.91958 0.87922 0.90441 0.93470 0.87240 0.91983 0.80181 0.80903 0.82991 0.75816 0.91142 0.89457 0.94531 0.87257 0.90228 0.91367 0.93107 0.95368 0.78952 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.49 9.18 71.98 0.66 -2.83 16 2 C 0.05 1.43 2.85 30.60 0.09 1.52 16 3 C -0.14 -3.29 9.56 71.98 0.69 -2.60 16 4 O -0.30 -11.18 8.03 -69.49 -0.56 -11.74 16 5 C 0.12 4.66 6.64 22.95 0.15 4.81 16 6 C -0.01 -0.39 9.44 84.89 0.80 0.41 16 7 N -0.45 -16.13 10.32 -195.58 -2.02 -18.15 16 8 C 0.04 1.60 11.16 84.62 0.94 2.55 16 9 C -0.03 -1.04 7.95 22.62 0.18 -0.86 16 10 C -0.16 -6.56 5.92 -19.81 -0.12 -6.67 16 11 C 0.57 24.27 7.75 86.79 0.67 24.94 16 12 O -0.57 -27.55 14.97 16.38 0.25 -27.31 16 13 N -0.69 -24.98 3.76 -445.42 -1.67 -26.65 16 14 C 0.15 4.61 2.57 44.99 0.12 4.73 16 15 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 16 C -0.15 -3.81 9.48 71.98 0.68 -3.12 16 17 C -0.12 -3.19 4.43 30.60 0.14 -3.05 16 18 C 0.16 5.71 2.89 44.99 0.13 5.84 16 19 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 20 C -0.15 -4.80 9.49 71.98 0.68 -4.12 16 21 N -0.72 -31.09 3.84 -322.94 -1.24 -32.33 16 22 C -0.23 -11.69 9.93 84.03 0.83 -10.85 16 23 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 24 C -0.04 -2.10 5.50 84.86 0.47 -1.64 16 25 N -0.92 -46.26 10.74 21.65 0.23 -46.03 16 26 Si 0.93 45.71 29.55 68.60 2.03 47.74 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 30 H 0.06 1.25 6.94 -2.39 -0.02 1.23 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.92 6.33 -2.38 -0.02 1.91 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.18 4.96 5.46 -2.91 -0.02 4.94 16 38 H 0.17 5.43 8.06 -2.91 -0.02 5.41 16 39 H 0.15 5.69 5.96 -2.91 -0.02 5.67 16 40 H 0.40 14.31 4.65 -92.71 -0.43 13.88 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.38 16.26 5.70 -92.71 -0.53 15.73 16 50 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 Total: -1.00 -65.54 398.04 4.12 -61.42 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.01 Total: 43.98 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 7.12 Total: 9.07 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -4.70 Total: -123.16 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.31 Total: -39.04 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.54 4.12 -61.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135069600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.631 kcal (2) G-P(sol) polarization free energy of solvation -65.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds