Wall clock time and date at job start Tue Mar 31 2020 19:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 O 1.42893 * 109.47444 * 120.00325 * 2 1 3 5 5 C 1.35665 * 117.00465 * 154.93911 * 4 2 1 6 6 C 1.38941 * 120.57916 * 5.52062 * 5 4 2 7 7 N 1.31630 * 120.79566 * 180.28802 * 6 5 4 8 8 C 1.31901 * 122.14589 * 359.71813 * 7 6 5 9 9 C 1.37963 * 121.07597 * 359.97438 * 8 7 6 10 10 C 1.39953 * 119.06913 * 0.02562 * 9 8 7 11 11 C 1.47837 * 120.96225 * 180.02562 * 10 9 8 12 12 O 1.21558 * 120.00000 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00334 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00215 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.47081 * 324.99384 * 14 13 11 16 16 C 1.52997 * 109.47149 * 84.99618 * 14 13 11 17 17 C 1.53003 * 109.46993 * 205.00004 * 14 13 11 18 18 C 1.53003 * 109.47190 * 64.99769 * 17 14 13 19 19 H 1.08999 * 109.46992 * 305.00338 * 18 17 14 20 20 C 1.52996 * 109.46825 * 184.99756 * 18 17 14 21 21 N 1.46503 * 109.46819 * 64.99903 * 18 17 14 22 22 C 1.36937 * 119.99846 * 204.99332 * 21 18 17 23 23 H 1.08004 * 119.99423 * 0.02562 * 22 21 18 24 24 C 1.38806 * 120.00166 * 180.02562 * 22 21 18 25 25 N 1.31621 * 119.99648 * 359.73078 * 24 22 21 26 26 Si 1.86804 * 119.99938 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46578 * 179.72720 * 26 24 22 28 28 H 1.48494 * 109.47119 * 299.72778 * 26 24 22 29 29 H 1.48493 * 109.46881 * 59.72842 * 26 24 22 30 30 H 1.08999 * 109.47046 * 299.99657 * 1 2 3 31 31 H 1.09000 * 109.47052 * 59.99826 * 1 2 3 32 32 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47046 * 240.00343 * 2 1 3 34 34 H 1.09000 * 109.47317 * 300.00012 * 3 2 1 35 35 H 1.09005 * 109.46942 * 60.00701 * 3 2 1 36 36 H 1.09006 * 109.46734 * 179.97438 * 3 2 1 37 37 H 1.08007 * 119.60144 * 0.02562 * 6 5 4 38 38 H 1.08001 * 119.46337 * 179.97438 * 8 7 6 39 39 H 1.07999 * 120.46487 * 180.02562 * 9 8 7 40 40 H 0.97002 * 119.99319 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.47259 * 60.00544 * 16 14 13 42 42 H 1.09004 * 109.47005 * 179.97438 * 16 14 13 43 43 H 1.08994 * 109.47445 * 300.00108 * 16 14 13 44 44 H 1.09000 * 109.46945 * 304.99619 * 17 14 13 45 45 H 1.08997 * 109.47045 * 184.99625 * 17 14 13 46 46 H 1.09004 * 109.47138 * 60.00693 * 20 18 17 47 47 H 1.08999 * 109.46749 * 180.02562 * 20 18 17 48 48 H 1.08999 * 109.47811 * 300.00081 * 20 18 17 49 49 H 0.96996 * 119.99865 * 25.00669 * 21 18 17 50 50 H 0.96991 * 120.00216 * 0.27495 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2440 -1.2249 1.0974 6 6 4.0429 -1.0303 -0.0226 7 7 5.2421 -1.5678 -0.0966 8 6 5.7427 -2.3038 0.8768 9 6 5.0234 -2.5452 2.0291 10 6 3.7423 -1.9967 2.1585 11 6 2.9352 -2.2281 3.3753 12 8 1.8247 -1.7429 3.4694 13 7 3.4306 -2.9772 4.3803 14 6 2.6306 -3.2070 5.5858 15 1 2.0411 -2.3168 5.8058 16 6 1.6942 -4.3952 5.3576 17 6 3.5589 -3.5079 6.7642 18 6 4.4092 -2.2737 7.0718 19 1 4.9376 -1.9627 6.1706 20 6 5.4230 -2.6128 8.1663 21 7 3.5421 -1.1851 7.5296 22 6 3.9408 0.1164 7.3808 23 1 4.8943 0.3404 6.9256 24 6 3.1196 1.1478 7.8150 25 7 1.9553 0.8749 8.3649 26 14 3.6632 2.9234 7.6114 27 1 2.6125 3.8269 8.1452 28 1 4.9292 3.1419 8.3560 29 1 3.8797 3.2126 6.1711 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 3.1301 1.4425 0.0005 37 1 3.6737 -0.4342 -0.8441 38 1 6.7317 -2.7244 0.7701 39 1 5.4430 -3.1490 2.8201 40 1 4.3170 -3.3641 4.3053 41 1 2.2837 -5.2853 5.1377 42 1 1.0993 -4.5665 6.2548 43 1 1.0330 -4.1808 4.5181 44 1 4.2105 -4.3437 6.5092 45 1 2.9628 -3.7658 7.6396 46 1 6.0682 -3.4227 7.8257 47 1 6.0285 -1.7334 8.3858 48 1 4.8946 -2.9238 9.0675 49 1 2.6858 -1.3864 7.9382 50 1 1.6729 -0.0470 8.4703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135069602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:52 Heat of formation + Delta-G solvation = -34.261891 kcal Electronic energy + Delta-G solvation = -30235.261323 eV Core-core repulsion = 26263.154976 eV Total energy + Delta-G solvation = -3972.106347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08097 -39.29034 -38.50497 -36.86097 -34.60448 -33.62774 -32.81627 -32.06420 -30.41685 -30.22819 -28.28550 -27.47115 -26.38788 -24.97880 -23.90664 -23.36986 -21.65555 -21.34735 -20.41249 -19.86947 -18.64585 -17.63339 -17.25874 -16.97951 -15.83336 -15.65534 -15.47561 -14.91728 -14.86372 -14.44770 -14.35831 -14.12913 -13.83521 -13.60722 -13.52995 -13.22585 -13.16429 -12.95330 -12.78684 -12.52126 -12.27301 -12.15168 -12.07243 -11.95722 -11.68977 -11.67671 -11.23857 -11.04961 -11.00506 -10.71360 -10.47230 -10.44852 -10.09230 -10.05367 -9.91309 -9.84933 -9.37482 -9.09186 -8.84614 -8.74617 -8.54138 -6.95083 -6.01049 -3.00214 0.63644 0.97924 2.92588 3.08443 3.29473 3.55219 3.60041 3.76507 3.80029 4.20521 4.42282 4.52472 4.60823 4.66976 4.73918 4.75680 4.83790 5.02476 5.08939 5.22221 5.35003 5.36753 5.40189 5.51298 5.54944 5.61181 5.61830 5.62866 5.69150 5.71742 5.82656 5.88926 5.94350 6.00208 6.01855 6.06307 6.22262 6.27786 6.30821 6.37690 6.48419 6.62653 6.76684 6.87571 7.01905 7.16427 7.69427 7.75623 7.87699 8.52102 8.84310 9.31340 10.17431 10.31941 11.47432 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008791 B = 0.004214 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.386654 B = 6642.996468 C = 7879.161479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 C -0.183 4.183 4 O -0.265 6.265 5 C 0.139 3.861 6 C 0.008 3.992 7 N -0.435 5.435 8 C 0.048 3.952 9 C -0.100 4.100 10 C -0.122 4.122 11 C 0.559 3.441 12 O -0.503 6.503 13 N -0.712 5.712 14 C 0.147 3.853 15 H 0.103 0.897 16 C -0.161 4.161 17 C -0.132 4.132 18 C 0.177 3.823 19 H 0.046 0.954 20 C -0.165 4.165 21 N -0.731 5.731 22 C -0.324 4.324 23 H 0.060 0.940 24 C -0.043 4.043 25 N -0.943 5.943 26 Si 1.075 2.925 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.297 1.297 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.392 0.608 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.052 0.948 48 H 0.044 0.956 49 H 0.366 0.634 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -10.007 -17.455 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 C -0.240 4.240 4 O -0.175 6.175 5 C 0.088 3.912 6 C -0.152 4.152 7 N -0.145 5.145 8 C -0.108 4.108 9 C -0.120 4.120 10 C -0.134 4.134 11 C 0.344 3.656 12 O -0.377 6.377 13 N -0.364 5.364 14 C 0.043 3.957 15 H 0.121 0.879 16 C -0.219 4.219 17 C -0.171 4.171 18 C 0.067 3.933 19 H 0.064 0.936 20 C -0.225 4.225 21 N -0.374 5.374 22 C -0.456 4.456 23 H 0.078 0.922 24 C -0.241 4.241 25 N -0.589 5.589 26 Si 0.906 3.094 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.224 1.224 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.226 0.774 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.943 -7.824 -17.771 19.639 hybrid contribution 0.467 -1.904 0.466 2.015 sum 3.409 -9.728 -17.305 20.143 Atomic orbital electron populations 1.21823 0.91897 1.03363 1.03305 1.22610 0.96266 0.92881 0.86943 1.22422 1.02012 0.95828 1.03762 1.86473 1.27203 1.66040 1.37758 1.20138 0.86299 0.91093 0.93714 1.22999 0.91377 1.03149 0.97633 1.67337 1.11839 1.05917 1.29446 1.22516 1.00607 0.98040 0.89683 1.22249 0.92622 0.97956 0.99175 1.19991 0.96082 1.01792 0.95526 1.17771 0.86298 0.79078 0.82482 1.90853 1.19345 1.47966 1.79567 1.45820 1.19968 1.52855 1.17802 1.21004 0.92322 0.99385 0.83020 0.87944 1.22185 0.99650 0.97817 1.02267 1.22197 0.98650 0.98807 0.97453 1.20154 0.90897 0.87286 0.94963 0.93562 1.22443 0.99734 0.99912 1.00409 1.42392 1.19899 1.01821 1.73296 1.19934 1.03868 0.84077 1.37681 0.92189 1.25640 0.95479 1.03635 0.99344 1.70869 1.20611 1.20618 1.46786 0.83313 0.74854 0.75596 0.75606 1.21030 1.22408 1.22440 0.90841 0.90515 0.91616 0.91024 0.90735 0.90698 0.91930 0.81891 0.82048 0.83836 0.77407 0.93051 0.91731 0.92428 0.91883 0.90688 0.94598 0.92843 0.93664 0.80114 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.56 37.16 0.36 -1.10 16 2 C 0.07 0.76 2.85 -26.73 -0.08 0.69 16 3 C -0.18 -1.85 9.18 37.16 0.34 -1.51 16 4 O -0.26 -4.15 8.03 -39.88 -0.32 -4.47 16 5 C 0.14 2.04 6.64 -38.53 -0.26 1.79 16 6 C 0.01 0.10 9.44 -17.38 -0.16 -0.06 16 7 N -0.44 -5.41 10.32 -13.17 -0.14 -5.55 16 8 C 0.05 0.51 11.16 -17.62 -0.20 0.31 16 9 C -0.10 -1.12 9.61 -39.04 -0.38 -1.50 16 10 C -0.12 -1.84 5.92 -104.53 -0.62 -2.45 16 11 C 0.56 9.94 7.75 -12.33 -0.10 9.84 16 12 O -0.50 -11.11 14.97 -15.87 -0.24 -11.35 16 13 N -0.71 -10.77 4.41 -54.75 -0.24 -11.01 16 14 C 0.15 2.40 2.52 -67.93 -0.17 2.23 16 15 H 0.10 2.21 7.05 -51.92 -0.37 1.84 16 16 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 17 C -0.13 -2.01 4.29 -26.73 -0.11 -2.12 16 18 C 0.18 3.39 2.84 -67.93 -0.19 3.20 16 19 H 0.05 0.92 7.56 -51.93 -0.39 0.53 16 20 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 21 N -0.73 -18.11 4.49 -53.42 -0.24 -18.35 16 22 C -0.32 -9.25 9.93 -15.06 -0.15 -9.40 16 23 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 24 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 25 N -0.94 -29.90 13.70 55.49 0.76 -29.14 16 26 Si 1.07 27.09 29.92 -169.99 -5.09 22.00 16 27 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 28 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.63 6.33 -51.93 -0.33 0.30 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.64 6.94 -51.93 -0.36 0.28 16 37 H 0.16 1.60 5.46 -52.48 -0.29 1.32 16 38 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.17 6.53 -52.49 -0.34 0.83 16 40 H 0.39 4.62 6.74 -40.82 -0.28 4.35 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.37 9.45 6.63 -40.82 -0.27 9.18 16 50 H 0.25 7.93 6.77 -40.82 -0.28 7.65 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -36.67 405.07 -8.53 -45.19 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -8.03 Total: 12.48 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.10 Total: -5.91 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.14 Total: -64.05 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.56 Total: -15.82 kcal Atomic # 14 Polarization: 27.09 SS G_CDS: -5.09 Total: 22.00 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.67 -8.53 -45.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135069602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.931 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds