Wall clock time and date at job start Tue Mar 31 2020 19:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 O 1.42893 * 109.47444 * 120.00325 * 2 1 3 5 5 C 1.35665 * 117.00465 * 154.93911 * 4 2 1 6 6 C 1.38941 * 120.57916 * 5.52062 * 5 4 2 7 7 N 1.31630 * 120.79566 * 180.28802 * 6 5 4 8 8 C 1.31901 * 122.14589 * 359.71813 * 7 6 5 9 9 C 1.37963 * 121.07597 * 359.97438 * 8 7 6 10 10 C 1.39953 * 119.06913 * 0.02562 * 9 8 7 11 11 C 1.47837 * 120.96225 * 180.02562 * 10 9 8 12 12 O 1.21558 * 120.00000 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00334 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00215 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.47081 * 324.99384 * 14 13 11 16 16 C 1.52997 * 109.47149 * 84.99618 * 14 13 11 17 17 C 1.53003 * 109.46993 * 205.00004 * 14 13 11 18 18 C 1.53003 * 109.47190 * 64.99769 * 17 14 13 19 19 H 1.08999 * 109.46992 * 305.00338 * 18 17 14 20 20 C 1.52996 * 109.46825 * 184.99756 * 18 17 14 21 21 N 1.46503 * 109.46819 * 64.99903 * 18 17 14 22 22 C 1.36937 * 119.99846 * 204.99332 * 21 18 17 23 23 H 1.08004 * 119.99423 * 0.02562 * 22 21 18 24 24 C 1.38806 * 120.00166 * 180.02562 * 22 21 18 25 25 N 1.31621 * 119.99648 * 359.73078 * 24 22 21 26 26 Si 1.86804 * 119.99938 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46578 * 179.72720 * 26 24 22 28 28 H 1.48494 * 109.47119 * 299.72778 * 26 24 22 29 29 H 1.48493 * 109.46881 * 59.72842 * 26 24 22 30 30 H 1.08999 * 109.47046 * 299.99657 * 1 2 3 31 31 H 1.09000 * 109.47052 * 59.99826 * 1 2 3 32 32 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47046 * 240.00343 * 2 1 3 34 34 H 1.09000 * 109.47317 * 300.00012 * 3 2 1 35 35 H 1.09005 * 109.46942 * 60.00701 * 3 2 1 36 36 H 1.09006 * 109.46734 * 179.97438 * 3 2 1 37 37 H 1.08007 * 119.60144 * 0.02562 * 6 5 4 38 38 H 1.08001 * 119.46337 * 179.97438 * 8 7 6 39 39 H 1.07999 * 120.46487 * 180.02562 * 9 8 7 40 40 H 0.97002 * 119.99319 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.47259 * 60.00544 * 16 14 13 42 42 H 1.09004 * 109.47005 * 179.97438 * 16 14 13 43 43 H 1.08994 * 109.47445 * 300.00108 * 16 14 13 44 44 H 1.09000 * 109.46945 * 304.99619 * 17 14 13 45 45 H 1.08997 * 109.47045 * 184.99625 * 17 14 13 46 46 H 1.09004 * 109.47138 * 60.00693 * 20 18 17 47 47 H 1.08999 * 109.46749 * 180.02562 * 20 18 17 48 48 H 1.08999 * 109.47811 * 300.00081 * 20 18 17 49 49 H 0.96996 * 119.99865 * 25.00669 * 21 18 17 50 50 H 0.96991 * 120.00216 * 0.27495 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2440 -1.2249 1.0974 6 6 4.0429 -1.0303 -0.0226 7 7 5.2421 -1.5678 -0.0966 8 6 5.7427 -2.3038 0.8768 9 6 5.0234 -2.5452 2.0291 10 6 3.7423 -1.9967 2.1585 11 6 2.9352 -2.2281 3.3753 12 8 1.8247 -1.7429 3.4694 13 7 3.4306 -2.9772 4.3803 14 6 2.6306 -3.2070 5.5858 15 1 2.0411 -2.3168 5.8058 16 6 1.6942 -4.3952 5.3576 17 6 3.5589 -3.5079 6.7642 18 6 4.4092 -2.2737 7.0718 19 1 4.9376 -1.9627 6.1706 20 6 5.4230 -2.6128 8.1663 21 7 3.5421 -1.1851 7.5296 22 6 3.9408 0.1164 7.3808 23 1 4.8943 0.3404 6.9256 24 6 3.1196 1.1478 7.8150 25 7 1.9553 0.8749 8.3649 26 14 3.6632 2.9234 7.6114 27 1 2.6125 3.8269 8.1452 28 1 4.9292 3.1419 8.3560 29 1 3.8797 3.2126 6.1711 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 3.1301 1.4425 0.0005 37 1 3.6737 -0.4342 -0.8441 38 1 6.7317 -2.7244 0.7701 39 1 5.4430 -3.1490 2.8201 40 1 4.3170 -3.3641 4.3053 41 1 2.2837 -5.2853 5.1377 42 1 1.0993 -4.5665 6.2548 43 1 1.0330 -4.1808 4.5181 44 1 4.2105 -4.3437 6.5092 45 1 2.9628 -3.7658 7.6396 46 1 6.0682 -3.4227 7.8257 47 1 6.0285 -1.7334 8.3858 48 1 4.8946 -2.9238 9.0675 49 1 2.6858 -1.3864 7.9382 50 1 1.6729 -0.0470 8.4703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135069602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:51 Heat of formation + Delta-G solvation = -59.292804 kcal Electronic energy + Delta-G solvation = -30236.346745 eV Core-core repulsion = 26263.154976 eV Total energy + Delta-G solvation = -3973.191768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09883 -40.56873 -39.47146 -38.41185 -36.27999 -34.59768 -34.28551 -33.50524 -31.60454 -31.26188 -30.17203 -28.28837 -27.68662 -26.06150 -25.54388 -24.83822 -22.80714 -22.35644 -21.75044 -21.34528 -19.74730 -19.42794 -18.58973 -18.03014 -16.95479 -16.82808 -16.80642 -16.38637 -16.05297 -15.90155 -15.54647 -15.48405 -15.23180 -14.85853 -14.81419 -14.66639 -14.37059 -14.10795 -13.66695 -13.58082 -13.45849 -13.42803 -13.16265 -13.05327 -12.93821 -12.80454 -12.77744 -12.55528 -12.21595 -12.08739 -11.93719 -11.90656 -11.88246 -11.59270 -11.29377 -11.18966 -10.92380 -10.85956 -10.49184 -10.06660 -9.51645 -9.06070 -8.36042 -5.27053 -0.39272 0.05057 1.49436 1.60482 1.75704 1.87349 2.02515 2.10459 2.68700 2.76218 3.35848 3.42759 3.49181 3.59193 3.65724 3.72046 3.81180 3.85988 3.91509 4.03028 4.03961 4.14028 4.28237 4.39126 4.45203 4.58848 4.60190 4.66155 4.70682 4.72361 4.74954 4.76155 4.78467 4.83694 4.84750 4.94552 5.01483 5.14441 5.16600 5.18686 5.25529 5.33568 5.43296 5.53879 5.54451 5.63049 6.23296 6.52364 6.54965 6.78533 7.14856 7.25662 8.05674 8.16096 9.16286 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008791 B = 0.004214 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.386654 B = 6642.996468 C = 7879.161479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 C -0.178 4.178 4 O -0.303 6.303 5 C 0.117 3.883 6 C 0.011 3.989 7 N -0.445 5.445 8 C 0.053 3.947 9 C -0.087 4.087 10 C -0.154 4.154 11 C 0.551 3.449 12 O -0.563 6.563 13 N -0.698 5.698 14 C 0.149 3.851 15 H 0.040 0.960 16 C -0.150 4.150 17 C -0.118 4.118 18 C 0.168 3.832 19 H 0.041 0.959 20 C -0.155 4.155 21 N -0.744 5.744 22 C -0.314 4.314 23 H 0.059 0.941 24 C -0.109 4.109 25 N -0.978 5.978 26 Si 1.117 2.883 27 H -0.293 1.293 28 H -0.272 1.272 29 H -0.289 1.289 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.185 0.815 38 H 0.203 0.797 39 H 0.177 0.823 40 H 0.411 0.589 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.041 0.959 49 H 0.356 0.644 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -11.951 -19.108 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.004 3.996 3 C -0.235 4.235 4 O -0.214 6.214 5 C 0.066 3.934 6 C -0.148 4.148 7 N -0.155 5.155 8 C -0.103 4.103 9 C -0.107 4.107 10 C -0.165 4.165 11 C 0.338 3.662 12 O -0.441 6.441 13 N -0.351 5.351 14 C 0.044 3.956 15 H 0.059 0.941 16 C -0.208 4.208 17 C -0.156 4.156 18 C 0.060 3.940 19 H 0.059 0.941 20 C -0.215 4.215 21 N -0.386 5.386 22 C -0.446 4.446 23 H 0.077 0.923 24 C -0.300 4.300 25 N -0.627 5.627 26 Si 0.943 3.057 27 H -0.219 1.219 28 H -0.198 1.198 29 H -0.216 1.216 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.202 0.798 38 H 0.219 0.781 39 H 0.194 0.806 40 H 0.249 0.751 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.131 0.869 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.046 0.954 48 H 0.060 0.940 49 H 0.188 0.812 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.119 -9.836 -19.435 22.625 hybrid contribution -0.414 -1.394 0.917 1.719 sum 5.705 -11.230 -18.517 22.395 Atomic orbital electron populations 1.21864 0.91574 1.03058 1.03683 1.22936 0.96653 0.93273 0.86741 1.22404 1.01791 0.95373 1.03966 1.86449 1.28048 1.66725 1.40146 1.20456 0.86538 0.91714 0.94664 1.23249 0.91135 1.03065 0.97344 1.67433 1.11625 1.06244 1.30163 1.23192 1.01754 0.96733 0.88624 1.22599 0.90793 0.97037 1.00307 1.20065 0.97655 1.04044 0.94784 1.18337 0.85929 0.78373 0.83595 1.90818 1.22005 1.50398 1.80872 1.45680 1.20578 1.52089 1.16725 1.20828 0.92745 0.97907 0.84093 0.94119 1.22077 0.99221 0.97776 1.01763 1.22106 0.98479 0.98206 0.96837 1.20475 0.91136 0.87319 0.95055 0.94129 1.22287 0.99282 1.00344 0.99547 1.42615 1.20364 1.02155 1.73456 1.20229 1.03124 0.85892 1.35325 0.92311 1.26939 0.95481 1.07523 1.00039 1.70971 1.22208 1.19868 1.49644 0.82762 0.75224 0.71610 0.76090 1.21861 1.19817 1.21629 0.93411 0.87060 0.92266 0.88397 0.87493 0.93423 0.92166 0.79845 0.78077 0.80577 0.75144 0.89553 0.91032 0.94643 0.86949 0.90433 0.90031 0.95414 0.93965 0.81244 0.94711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.56 71.98 0.69 -2.30 16 2 C 0.06 1.32 2.85 30.60 0.09 1.41 16 3 C -0.18 -3.61 9.18 71.98 0.66 -2.95 16 4 O -0.30 -10.06 8.03 -69.55 -0.56 -10.62 16 5 C 0.12 3.50 6.64 22.95 0.15 3.65 16 6 C 0.01 0.26 9.44 84.89 0.80 1.06 16 7 N -0.44 -9.93 10.32 -195.58 -2.02 -11.95 16 8 C 0.05 0.94 11.16 84.62 0.94 1.89 16 9 C -0.09 -1.74 9.61 22.62 0.22 -1.52 16 10 C -0.15 -4.61 5.92 -19.81 -0.12 -4.73 16 11 C 0.55 20.28 7.75 86.78 0.67 20.95 16 12 O -0.56 -26.85 14.97 16.36 0.24 -26.60 16 13 N -0.70 -20.65 4.41 -445.41 -1.96 -22.61 16 14 C 0.15 4.86 2.52 44.99 0.11 4.98 16 15 H 0.04 1.87 7.05 -2.38 -0.02 1.85 16 16 C -0.15 -4.02 9.48 71.98 0.68 -3.34 16 17 C -0.12 -3.31 4.29 30.60 0.13 -3.18 16 18 C 0.17 6.22 2.84 44.99 0.13 6.34 16 19 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 20 C -0.15 -5.07 9.49 71.98 0.68 -4.38 16 21 N -0.74 -37.66 4.49 -322.94 -1.45 -39.11 16 22 C -0.31 -18.26 9.93 84.03 0.83 -17.42 16 23 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 24 C -0.11 -6.66 5.50 84.86 0.47 -6.20 16 25 N -0.98 -64.52 13.70 21.65 0.30 -64.22 16 26 Si 1.12 55.76 29.92 68.60 2.05 57.81 16 27 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 28 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.62 6.33 -2.39 -0.02 1.60 16 34 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 1.23 6.94 -2.38 -0.02 1.21 16 37 H 0.18 3.31 5.46 -2.91 -0.02 3.29 16 38 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.18 2.14 6.53 -2.91 -0.02 2.12 16 40 H 0.41 8.56 6.74 -92.71 -0.62 7.93 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 48 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.36 19.23 6.63 -92.71 -0.61 18.61 16 50 H 0.24 15.94 6.77 -92.71 -0.63 15.32 16 Total: -1.00 -87.38 405.07 3.60 -83.78 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: -0.15 Total: 39.26 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 7.15 Total: -5.73 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -5.13 Total: -137.89 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.31 Total: -37.22 kcal Atomic # 14 Polarization: 55.76 SS G_CDS: 2.05 Total: 57.81 kcal Total: -87.38 3.60 -83.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135069602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.487 kcal (2) G-P(sol) polarization free energy of solvation -87.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds