Wall clock time and date at job start Tue Mar 31 2020 19:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46966 * 2 1 4 4 C 1.53004 * 109.47048 * 120.00711 * 2 1 3 5 5 C 1.53000 * 109.46727 * 184.99985 * 4 2 1 6 6 H 1.08999 * 109.46880 * 304.99516 * 5 4 2 7 7 C 1.52999 * 109.46661 * 184.99965 * 5 4 2 8 8 N 1.46500 * 109.47144 * 64.99659 * 5 4 2 9 9 C 1.34776 * 119.99501 * 204.99444 * 8 5 4 10 10 O 1.21278 * 120.00497 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99636 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.46862 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46816 * 180.02562 * 12 11 9 14 14 N 1.46507 * 109.47241 * 180.02562 * 13 12 11 15 15 C 1.35763 * 119.62574 * 90.00014 * 14 13 12 16 16 C 1.35346 * 120.69997 * 180.27933 * 15 14 13 17 17 C 1.40202 * 119.94860 * 359.43664 * 16 15 14 18 18 C 1.36395 * 119.26120 * 0.57668 * 17 16 15 19 19 C 1.34664 * 119.61981 * 270.02413 * 14 13 12 20 20 O 1.22055 * 119.98569 * 359.97438 * 19 14 13 21 21 N 1.46500 * 109.46580 * 240.00273 * 2 1 3 22 22 C 1.36934 * 119.99851 * 85.00421 * 21 2 1 23 23 H 1.07995 * 120.00304 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99885 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99932 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00178 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46837 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47129 * 119.99875 * 26 24 22 29 29 H 1.48494 * 109.47321 * 240.00489 * 26 24 22 30 30 H 1.08996 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47077 * 299.99325 * 1 2 3 32 32 H 1.08996 * 109.47053 * 59.99773 * 1 2 3 33 33 H 1.09001 * 109.47102 * 64.99681 * 4 2 1 34 34 H 1.09001 * 109.46725 * 304.99581 * 4 2 1 35 35 H 1.08992 * 109.47694 * 59.99718 * 7 5 4 36 36 H 1.09008 * 109.46788 * 179.97438 * 7 5 4 37 37 H 1.08999 * 109.47107 * 299.99412 * 7 5 4 38 38 H 0.96999 * 120.00008 * 25.00103 * 8 5 4 39 39 H 1.08998 * 109.46925 * 60.00402 * 11 9 8 40 40 H 1.09001 * 109.47148 * 300.00322 * 11 9 8 41 41 H 1.09004 * 109.46770 * 60.00629 * 12 11 9 42 42 H 1.08991 * 109.47766 * 300.00411 * 12 11 9 43 43 H 1.08991 * 109.47264 * 60.00501 * 13 12 11 44 44 H 1.09001 * 109.47142 * 300.00136 * 13 12 11 45 45 H 1.08002 * 119.64669 * 359.97438 * 15 14 13 46 46 H 1.07996 * 120.02410 * 179.69320 * 16 15 14 47 47 H 1.08002 * 120.36615 * 180.31976 * 17 16 15 48 48 H 1.08002 * 120.34395 * 179.74309 * 18 17 16 49 49 H 0.96998 * 120.00313 * 264.99478 * 21 2 1 50 50 H 0.97002 * 119.99591 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9953 -0.9924 0.3867 7 6 4.0851 -1.4386 2.4923 8 7 3.9479 0.7892 1.4924 9 6 5.1612 1.2133 1.0867 10 8 5.9356 0.4339 0.5732 11 6 5.5551 2.6564 1.2701 12 6 6.9699 2.8715 0.7289 13 6 7.3701 4.3364 0.9156 14 7 8.7246 4.5427 0.3968 15 6 8.8991 4.8944 -0.9028 16 6 10.1409 5.0849 -1.4063 17 6 11.2627 4.9306 -0.5795 18 6 11.0853 4.5768 0.7257 19 6 9.7823 4.3808 1.2144 20 8 9.6091 4.0644 2.3805 21 7 2.0182 -0.6906 -1.1962 22 6 2.1490 -0.0074 -2.3757 23 1 1.8919 1.0404 -2.4243 24 6 2.6121 -0.6616 -3.5091 25 7 2.9250 -1.9387 -3.4501 26 14 2.7899 0.2702 -5.1184 27 1 2.3751 1.6824 -4.9210 28 1 4.2068 0.2281 -5.5608 29 1 1.9295 -0.3589 -6.1523 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.7516 -1.7717 1.2054 34 1 1.6054 -0.2619 2.1369 35 1 3.8001 -2.4821 2.3593 36 1 5.1716 -1.3620 2.5379 37 1 3.6546 -1.0597 3.4192 38 1 3.3285 1.4127 1.9028 39 1 5.5291 2.9081 2.3303 40 1 4.8579 3.2951 0.7278 41 1 6.9954 2.6199 -0.3314 42 1 7.6673 2.2328 1.2707 43 1 7.3446 4.5876 1.9759 44 1 6.6727 4.9755 0.3740 45 1 8.0382 5.0186 -1.5429 46 1 10.2674 5.3597 -2.4430 47 1 12.2564 5.0860 -0.9729 48 1 11.9372 4.4491 1.3771 49 1 2.2490 -1.6317 -1.1528 50 1 3.2483 -2.3959 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135224728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:12 Heat of formation + Delta-G solvation = -44.456329 kcal Electronic energy + Delta-G solvation = -28961.113381 eV Core-core repulsion = 24988.564971 eV Total energy + Delta-G solvation = -3972.548411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51726 -39.57468 -37.07626 -36.93785 -35.66496 -34.41692 -32.92407 -32.11881 -30.66655 -30.04630 -28.60210 -27.50303 -26.29754 -24.27613 -23.65651 -23.44000 -22.03857 -20.95092 -20.10884 -19.69195 -17.93073 -17.51067 -17.24899 -16.71478 -16.45133 -15.91288 -15.73983 -15.58008 -14.87310 -14.69401 -14.38358 -14.08223 -13.96446 -13.70402 -13.49286 -13.06357 -13.01593 -12.67698 -12.54981 -12.31750 -12.14983 -12.08528 -12.03052 -11.81306 -11.75013 -11.72518 -11.56623 -11.03299 -10.92080 -10.84585 -10.61350 -10.41146 -10.31933 -10.20678 -10.09427 -9.88063 -9.62503 -9.46965 -8.88392 -8.65572 -8.18944 -6.91613 -5.72990 -3.00860 0.61010 1.66971 2.41158 3.00555 3.41676 3.43526 3.47268 3.51055 3.53663 4.32867 4.38294 4.61197 4.63138 4.68149 4.80251 4.88968 5.00322 5.04486 5.11991 5.19150 5.27335 5.32649 5.44186 5.47895 5.52849 5.62941 5.72047 5.75153 5.84883 5.89920 5.92395 5.97203 6.02783 6.04163 6.13382 6.15173 6.30120 6.30853 6.38439 6.45259 6.58168 6.74731 6.83550 6.87734 6.96147 7.07606 7.71555 7.84945 7.85986 8.45270 8.61068 9.56441 10.14628 10.48688 11.49887 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.002919 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.214771 B = 9589.655219 C =11498.759577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.718 5.718 9 C 0.513 3.487 10 O -0.534 6.534 11 C -0.136 4.136 12 C -0.118 4.118 13 C 0.089 3.911 14 N -0.493 5.493 15 C 0.139 3.861 16 C -0.238 4.238 17 C -0.016 4.016 18 C -0.248 4.248 19 C 0.512 3.488 20 O -0.553 6.553 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.393 0.607 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.163 0.837 46 H 0.145 0.855 47 H 0.133 0.867 48 H 0.146 0.854 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 15.215 10.191 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.219 4.219 8 N -0.369 5.369 9 C 0.299 3.701 10 O -0.410 6.410 11 C -0.177 4.177 12 C -0.157 4.157 13 C -0.032 4.032 14 N -0.203 5.203 15 C 0.011 3.989 16 C -0.261 4.261 17 C -0.038 4.038 18 C -0.270 4.270 19 C 0.314 3.686 20 O -0.436 6.436 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.085 0.915 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.227 0.773 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.181 0.819 46 H 0.162 0.838 47 H 0.151 0.849 48 H 0.164 0.836 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.783 14.551 10.457 19.956 hybrid contribution -0.220 0.428 -0.969 1.082 sum 8.563 14.980 9.488 19.692 Atomic orbital electron populations 1.22461 0.99586 1.00812 0.99718 1.20216 0.91501 0.95503 0.86574 0.93673 1.22167 0.93849 1.02172 0.98757 1.21007 0.94965 0.80332 0.99762 0.87750 1.22181 1.01500 1.00182 0.98061 1.45972 1.16504 1.11606 1.62789 1.20392 0.81938 0.89941 0.77872 1.90737 1.51028 1.56664 1.42531 1.21532 0.97789 0.95023 1.03342 1.21636 0.96135 0.94462 1.03451 1.22099 0.80376 0.98349 1.02402 1.45579 1.09701 1.55106 1.09911 1.22054 0.99859 0.92481 0.84491 1.20673 0.91118 1.12548 1.01795 1.21447 0.99372 0.89975 0.92960 1.22126 0.96472 1.10740 0.97679 1.17176 0.85349 0.79890 0.86204 1.90958 1.85914 1.50269 1.16438 1.42406 1.77956 1.10576 1.05275 1.19183 1.36281 0.93652 0.87351 0.91515 1.24704 1.02284 0.95944 0.97941 1.69658 1.50967 1.08619 1.28648 0.86188 0.77294 0.78708 0.84415 1.20741 1.21955 1.21970 0.93541 0.94730 0.92946 0.90713 0.92109 0.91823 0.92588 0.93198 0.77326 0.88894 0.88642 0.90294 0.90239 0.88076 0.88869 0.81930 0.83750 0.84905 0.83619 0.78353 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 3 H 0.05 0.84 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.97 4.29 -26.73 -0.11 -2.09 16 5 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 6 H 0.10 2.24 7.05 -51.93 -0.37 1.87 16 7 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 8 N -0.72 -10.11 4.45 -53.80 -0.24 -10.35 16 9 C 0.51 8.07 7.79 -10.98 -0.09 7.99 16 10 O -0.53 -11.12 15.64 5.56 0.09 -11.04 16 11 C -0.14 -1.46 5.70 -27.88 -0.16 -1.62 16 12 C -0.12 -1.40 4.83 -26.73 -0.13 -1.53 16 13 C 0.09 0.82 5.33 -4.04 -0.02 0.80 16 14 N -0.49 -5.12 2.58 -119.77 -0.31 -5.43 16 15 C 0.14 1.08 10.28 -16.84 -0.17 0.91 16 16 C -0.24 -1.69 10.01 -39.88 -0.40 -2.09 16 17 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 18 C -0.25 -2.59 9.99 -39.38 -0.39 -2.98 16 19 C 0.51 6.69 7.41 -15.44 -0.11 6.57 16 20 O -0.55 -9.22 16.64 4.87 0.08 -9.14 16 21 N -0.72 -17.45 4.49 -53.42 -0.24 -17.69 16 22 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 26 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.39 4.23 8.60 -40.82 -0.35 3.88 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.08 1.18 8.10 -51.93 -0.42 0.75 16 43 H 0.10 0.98 7.39 -51.93 -0.38 0.60 16 44 H 0.09 0.56 8.01 -51.93 -0.42 0.15 16 45 H 0.16 0.80 8.04 -52.49 -0.42 0.38 16 46 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 415.61 15.07 6.26 6.26 Total: -1.00 -37.21 415.61 -9.08 -46.29 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.53 Total: 12.06 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.89 Total: -0.82 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -0.06 Total: -61.05 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.21 -9.08 -46.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135224728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.834 kcal (2) G-P(sol) polarization free energy of solvation -37.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds