Wall clock time and date at job start Tue Mar 31 2020 19:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46966 * 2 1 4 4 C 1.53004 * 109.47048 * 120.00711 * 2 1 3 5 5 C 1.53000 * 109.46727 * 184.99985 * 4 2 1 6 6 H 1.08999 * 109.46880 * 304.99516 * 5 4 2 7 7 C 1.52999 * 109.46661 * 184.99965 * 5 4 2 8 8 N 1.46500 * 109.47144 * 64.99659 * 5 4 2 9 9 C 1.34776 * 119.99501 * 204.99444 * 8 5 4 10 10 O 1.21278 * 120.00497 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99636 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.46862 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46816 * 180.02562 * 12 11 9 14 14 N 1.46507 * 109.47241 * 180.02562 * 13 12 11 15 15 C 1.35763 * 119.62574 * 90.00014 * 14 13 12 16 16 C 1.35346 * 120.69997 * 180.27933 * 15 14 13 17 17 C 1.40202 * 119.94860 * 359.43664 * 16 15 14 18 18 C 1.36395 * 119.26120 * 0.57668 * 17 16 15 19 19 C 1.34664 * 119.61981 * 270.02413 * 14 13 12 20 20 O 1.22055 * 119.98569 * 359.97438 * 19 14 13 21 21 N 1.46500 * 109.46580 * 240.00273 * 2 1 3 22 22 C 1.36934 * 119.99851 * 85.00421 * 21 2 1 23 23 H 1.07995 * 120.00304 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99885 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99932 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00178 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46837 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47129 * 119.99875 * 26 24 22 29 29 H 1.48494 * 109.47321 * 240.00489 * 26 24 22 30 30 H 1.08996 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47077 * 299.99325 * 1 2 3 32 32 H 1.08996 * 109.47053 * 59.99773 * 1 2 3 33 33 H 1.09001 * 109.47102 * 64.99681 * 4 2 1 34 34 H 1.09001 * 109.46725 * 304.99581 * 4 2 1 35 35 H 1.08992 * 109.47694 * 59.99718 * 7 5 4 36 36 H 1.09008 * 109.46788 * 179.97438 * 7 5 4 37 37 H 1.08999 * 109.47107 * 299.99412 * 7 5 4 38 38 H 0.96999 * 120.00008 * 25.00103 * 8 5 4 39 39 H 1.08998 * 109.46925 * 60.00402 * 11 9 8 40 40 H 1.09001 * 109.47148 * 300.00322 * 11 9 8 41 41 H 1.09004 * 109.46770 * 60.00629 * 12 11 9 42 42 H 1.08991 * 109.47766 * 300.00411 * 12 11 9 43 43 H 1.08991 * 109.47264 * 60.00501 * 13 12 11 44 44 H 1.09001 * 109.47142 * 300.00136 * 13 12 11 45 45 H 1.08002 * 119.64669 * 359.97438 * 15 14 13 46 46 H 1.07996 * 120.02410 * 179.69320 * 16 15 14 47 47 H 1.08002 * 120.36615 * 180.31976 * 17 16 15 48 48 H 1.08002 * 120.34395 * 179.74309 * 18 17 16 49 49 H 0.96998 * 120.00313 * 264.99478 * 21 2 1 50 50 H 0.97002 * 119.99591 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9953 -0.9924 0.3867 7 6 4.0851 -1.4386 2.4923 8 7 3.9479 0.7892 1.4924 9 6 5.1612 1.2133 1.0867 10 8 5.9356 0.4339 0.5732 11 6 5.5551 2.6564 1.2701 12 6 6.9699 2.8715 0.7289 13 6 7.3701 4.3364 0.9156 14 7 8.7246 4.5427 0.3968 15 6 8.8991 4.8944 -0.9028 16 6 10.1409 5.0849 -1.4063 17 6 11.2627 4.9306 -0.5795 18 6 11.0853 4.5768 0.7257 19 6 9.7823 4.3808 1.2144 20 8 9.6091 4.0644 2.3805 21 7 2.0182 -0.6906 -1.1962 22 6 2.1490 -0.0074 -2.3757 23 1 1.8919 1.0404 -2.4243 24 6 2.6121 -0.6616 -3.5091 25 7 2.9250 -1.9387 -3.4501 26 14 2.7899 0.2702 -5.1184 27 1 2.3751 1.6824 -4.9210 28 1 4.2068 0.2281 -5.5608 29 1 1.9295 -0.3589 -6.1523 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.7516 -1.7717 1.2054 34 1 1.6054 -0.2619 2.1369 35 1 3.8001 -2.4821 2.3593 36 1 5.1716 -1.3620 2.5379 37 1 3.6546 -1.0597 3.4192 38 1 3.3285 1.4127 1.9028 39 1 5.5291 2.9081 2.3303 40 1 4.8579 3.2951 0.7278 41 1 6.9954 2.6199 -0.3314 42 1 7.6673 2.2328 1.2707 43 1 7.3446 4.5876 1.9759 44 1 6.6727 4.9755 0.3740 45 1 8.0382 5.0186 -1.5429 46 1 10.2674 5.3597 -2.4430 47 1 12.2564 5.0860 -0.9729 48 1 11.9372 4.4491 1.3771 49 1 2.2490 -1.6317 -1.1528 50 1 3.2483 -2.3959 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135224728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:11 Heat of formation + Delta-G solvation = -70.296942 kcal Electronic energy + Delta-G solvation = -28962.233914 eV Core-core repulsion = 24988.564971 eV Total energy + Delta-G solvation = -3973.668944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.30863 -40.84400 -38.38781 -37.95991 -36.53702 -35.97910 -34.04665 -33.76250 -31.96792 -30.78496 -30.40717 -28.37487 -27.58208 -25.66013 -25.02493 -24.33905 -22.93841 -22.16115 -21.35161 -21.15021 -19.27723 -18.71456 -18.27809 -17.80770 -17.30894 -17.10319 -16.77489 -16.62309 -16.44957 -15.64764 -15.59296 -15.49869 -15.22744 -14.97357 -14.70007 -14.52439 -14.23791 -13.90073 -13.61392 -13.35351 -13.31017 -13.20517 -13.04542 -12.97119 -12.85353 -12.77873 -12.68230 -12.64047 -12.57983 -12.21863 -12.11686 -11.84342 -11.81276 -11.53786 -11.40101 -11.10088 -10.99289 -10.91443 -10.75759 -9.93527 -8.96557 -8.93278 -7.89748 -5.15542 -0.07307 0.92376 1.44573 1.46335 1.55306 1.66924 1.78805 2.36728 2.58532 2.69997 3.45189 3.66115 3.70803 3.76574 3.85022 3.94189 3.99614 4.03202 4.13890 4.16004 4.29089 4.34233 4.40864 4.42877 4.53623 4.55175 4.57475 4.65297 4.70912 4.79340 4.83228 4.96475 4.99084 5.04838 5.08326 5.11596 5.16424 5.22692 5.23897 5.35817 5.39692 5.44762 5.54628 5.65101 5.66766 5.71745 6.11004 6.32912 6.71935 6.99047 7.38285 7.45595 8.18867 8.38407 9.34539 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.002919 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.214771 B = 9589.655219 C =11498.759577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.049 0.951 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.043 0.957 7 C -0.152 4.152 8 N -0.705 5.705 9 C 0.501 3.499 10 O -0.597 6.597 11 C -0.124 4.124 12 C -0.110 4.110 13 C 0.093 3.907 14 N -0.495 5.495 15 C 0.130 3.870 16 C -0.236 4.236 17 C 0.005 3.995 18 C -0.286 4.286 19 C 0.491 3.509 20 O -0.611 6.611 21 N -0.733 5.733 22 C -0.222 4.222 23 H 0.075 0.925 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.301 1.301 29 H -0.296 1.296 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.414 0.586 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.137 0.863 45 H 0.198 0.802 46 H 0.178 0.822 47 H 0.166 0.834 48 H 0.143 0.857 49 H 0.368 0.632 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 18.458 10.271 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.067 0.933 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.357 5.357 9 C 0.289 3.711 10 O -0.478 6.478 11 C -0.164 4.164 12 C -0.149 4.149 13 C -0.028 4.028 14 N -0.204 5.204 15 C 0.003 3.997 16 C -0.258 4.258 17 C -0.017 4.017 18 C -0.308 4.308 19 C 0.296 3.704 20 O -0.499 6.499 21 N -0.373 5.373 22 C -0.354 4.354 23 H 0.092 0.908 24 C -0.275 4.275 25 N -0.624 5.624 26 Si 0.794 3.206 27 H -0.184 1.184 28 H -0.229 1.229 29 H -0.224 1.224 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.252 0.748 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.155 0.845 45 H 0.215 0.785 46 H 0.196 0.804 47 H 0.183 0.817 48 H 0.161 0.839 49 H 0.199 0.801 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.089 17.880 10.561 21.943 hybrid contribution 0.265 -0.548 -1.008 1.178 sum 7.355 17.332 9.554 21.113 Atomic orbital electron populations 1.22312 0.97788 1.00723 1.00806 1.20528 0.92547 0.95458 0.85830 0.93297 1.22069 0.92701 1.02054 0.98751 1.20758 0.95572 0.81657 0.97885 0.93866 1.22084 1.00074 1.00288 0.98561 1.45858 1.16502 1.11229 1.62104 1.21360 0.81573 0.91630 0.76582 1.90717 1.52877 1.58752 1.45424 1.21559 0.97389 0.91727 1.05728 1.21495 0.96155 0.95708 1.01555 1.22163 0.80721 0.96905 1.02981 1.45631 1.09559 1.54388 1.10781 1.22761 1.01755 0.91636 0.83552 1.21192 0.90521 1.10963 1.03155 1.21866 1.01398 0.86854 0.91603 1.22152 0.95485 1.13796 0.99355 1.17638 0.86813 0.79949 0.85983 1.90902 1.86755 1.53590 1.18661 1.42650 1.78165 1.10066 1.06426 1.19578 1.33609 0.93917 0.88292 0.90758 1.25500 1.03688 0.96852 1.01441 1.69829 1.53319 1.10346 1.28951 0.85190 0.76399 0.78573 0.80415 1.18437 1.22904 1.22383 0.94254 0.90426 0.95009 0.91083 0.87474 0.91534 0.94893 0.89882 0.74838 0.85848 0.85203 0.92131 0.94481 0.88678 0.84464 0.78518 0.80429 0.81658 0.83870 0.80101 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.49 71.98 0.68 -4.23 16 2 C 0.16 5.77 2.84 44.99 0.13 5.90 16 3 H 0.05 1.69 7.56 -2.39 -0.02 1.67 16 4 C -0.12 -3.26 4.29 30.60 0.13 -3.13 16 5 C 0.15 4.68 2.52 44.99 0.11 4.79 16 6 H 0.04 1.95 7.05 -2.39 -0.02 1.94 16 7 C -0.15 -4.19 9.48 71.98 0.68 -3.51 16 8 N -0.70 -18.81 4.45 -442.53 -1.97 -20.78 16 9 C 0.50 15.75 7.79 87.66 0.68 16.43 16 10 O -0.60 -26.42 15.64 -3.02 -0.05 -26.46 16 11 C -0.12 -2.44 5.70 29.85 0.17 -2.27 16 12 C -0.11 -2.63 4.83 30.59 0.15 -2.48 16 13 C 0.09 1.59 5.33 86.38 0.46 2.05 16 14 N -0.50 -10.00 2.58 -650.97 -1.68 -11.68 16 15 C 0.13 1.70 10.28 83.42 0.86 2.56 16 16 C -0.24 -2.64 10.01 22.08 0.22 -2.42 16 17 C 0.00 0.06 10.10 22.32 0.23 0.29 16 18 C -0.29 -6.16 9.99 22.40 0.22 -5.94 16 19 C 0.49 13.49 7.41 84.82 0.63 14.12 16 20 O -0.61 -22.05 16.64 -5.49 -0.09 -22.14 16 21 N -0.73 -35.79 4.49 -322.94 -1.45 -37.24 16 22 C -0.22 -12.12 9.93 84.03 0.83 -11.28 16 23 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 24 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 25 N -0.97 -61.29 13.06 21.65 0.28 -61.01 16 26 Si 0.96 46.65 29.55 68.60 2.03 48.68 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 29 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.41 7.43 8.60 -92.71 -0.80 6.63 16 39 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 42 H 0.04 1.18 8.10 -2.39 -0.02 1.17 16 43 H 0.09 1.78 7.39 -2.39 -0.02 1.77 16 44 H 0.14 1.12 8.01 -2.39 -0.02 1.10 16 45 H 0.20 1.13 8.04 -2.91 -0.02 1.11 16 46 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 47 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 48 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 49 H 0.37 19.98 7.80 -92.71 -0.72 19.25 16 50 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -90.48 415.61 3.13 -87.35 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.59 Total: 36.80 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 6.66 Total: 6.49 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -4.82 Total: -130.71 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.14 Total: -48.61 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -90.48 3.13 -87.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135224728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.051 kcal (2) G-P(sol) polarization free energy of solvation -90.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds