Wall clock time and date at job start Tue Mar 31 2020 19:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47102 * 2 1 4 4 C 1.52997 * 109.47131 * 239.99995 * 2 1 3 5 5 C 1.53003 * 109.47075 * 175.00049 * 4 2 1 6 6 H 1.09002 * 109.46812 * 304.99801 * 5 4 2 7 7 C 1.53005 * 109.47206 * 185.00023 * 5 4 2 8 8 N 1.46501 * 109.47081 * 64.99924 * 5 4 2 9 9 C 1.36935 * 120.00030 * 205.00270 * 8 5 4 10 10 H 1.07999 * 119.99947 * 359.97438 * 9 8 5 11 11 C 1.38808 * 120.00336 * 180.02562 * 9 8 5 12 12 N 1.31622 * 119.99630 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00201 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47448 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47123 * 119.99792 * 13 11 9 16 16 H 1.48500 * 109.47166 * 239.99413 * 13 11 9 17 17 N 1.46500 * 109.46929 * 120.00115 * 2 1 3 18 18 C 1.34776 * 119.99501 * 274.99629 * 17 2 1 19 19 O 1.21278 * 120.00497 * 0.02562 * 18 17 2 20 20 C 1.50707 * 119.99636 * 179.97438 * 18 17 2 21 21 C 1.52999 * 109.46862 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.46816 * 180.02562 * 21 20 18 23 23 N 1.46507 * 109.47241 * 180.02562 * 22 21 20 24 24 C 1.35763 * 119.62574 * 90.00014 * 23 22 21 25 25 C 1.35346 * 120.69997 * 180.27933 * 24 23 22 26 26 C 1.40202 * 119.94860 * 359.43664 * 25 24 23 27 27 C 1.36395 * 119.26120 * 0.57668 * 26 25 24 28 28 C 1.34664 * 119.61981 * 270.02413 * 23 22 21 29 29 O 1.22055 * 119.98569 * 359.97438 * 28 23 22 30 30 H 1.09003 * 109.47234 * 60.00237 * 1 2 3 31 31 H 1.08997 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47219 * 299.99966 * 1 2 3 33 33 H 1.09001 * 109.47571 * 294.99706 * 4 2 1 34 34 H 1.09003 * 109.47578 * 55.00403 * 4 2 1 35 35 H 1.08996 * 109.46972 * 59.99913 * 7 5 4 36 36 H 1.09000 * 109.46988 * 179.97438 * 7 5 4 37 37 H 1.08999 * 109.46565 * 299.99711 * 7 5 4 38 38 H 0.97000 * 120.00047 * 25.00184 * 8 5 4 39 39 H 0.97005 * 119.99616 * 180.02562 * 12 11 9 40 40 H 0.96999 * 120.00008 * 95.00289 * 17 2 1 41 41 H 1.08998 * 109.46925 * 60.00402 * 20 18 17 42 42 H 1.09001 * 109.47148 * 300.00322 * 20 18 17 43 43 H 1.09004 * 109.46770 * 60.00629 * 21 20 18 44 44 H 1.08991 * 109.47766 * 300.00411 * 21 20 18 45 45 H 1.08991 * 109.47264 * 60.00501 * 22 21 20 46 46 H 1.09001 * 109.47142 * 300.00136 * 22 21 20 47 47 H 1.08002 * 119.64669 * 359.97438 * 24 23 22 48 48 H 1.07996 * 120.02410 * 179.69320 * 25 24 23 49 49 H 1.08002 * 120.36615 * 180.31976 * 26 25 24 50 50 H 1.08002 * 120.34395 * 179.74309 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.8570 0.4359 -1.2678 7 6 4.0646 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3943 -0.9855 0.2808 10 1 5.9388 -0.1794 -0.1883 11 6 5.9525 -1.6689 1.3523 12 7 5.2890 -2.6517 1.9236 13 14 7.6451 -1.1937 1.9835 14 1 8.1764 -0.0667 1.1756 15 1 7.5446 -0.7794 3.4060 16 1 8.5603 -2.3578 1.8706 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6488 -0.7288 3.5878 21 6 2.6998 0.2543 4.7590 22 6 3.2098 -0.4670 6.0083 23 7 3.2581 0.4741 7.1300 24 6 2.1719 0.6195 7.9314 25 6 2.1907 1.4867 8.9703 26 6 3.3449 2.2375 9.2345 27 6 4.4350 2.0904 8.4280 28 6 4.3793 1.1855 7.3542 29 8 5.3477 1.0438 6.6249 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.6264 -0.6886 -3.4657 36 1 5.1508 -1.1477 -2.6701 37 1 3.7723 -2.2741 -2.6698 38 1 3.6647 -2.0584 0.2387 39 1 5.6789 -3.1290 2.6727 40 1 2.2490 -1.6318 1.1526 41 1 3.6479 -1.1213 3.3986 42 1 1.9758 -1.5506 3.8326 43 1 1.7004 0.6464 4.9480 44 1 3.3724 1.0763 4.5145 45 1 4.2091 -0.8588 5.8191 46 1 2.5374 -1.2892 6.2530 47 1 1.2816 0.0405 7.7348 48 1 1.3187 1.5972 9.5978 49 1 3.3691 2.9277 10.0649 50 1 5.3318 2.6630 8.6130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135224730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:18 Heat of formation + Delta-G solvation = -37.233087 kcal Electronic energy + Delta-G solvation = -29943.868327 eV Core-core repulsion = 25971.633140 eV Total energy + Delta-G solvation = -3972.235187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27897 -39.28250 -36.90554 -36.80517 -35.39769 -34.13573 -32.59233 -32.13819 -30.54532 -29.86277 -28.54785 -27.12441 -26.30378 -24.03716 -23.64005 -23.22399 -21.79442 -20.67535 -20.20423 -19.37651 -17.62636 -17.28720 -17.16037 -16.43414 -16.17939 -15.72796 -15.48545 -15.19452 -14.79565 -14.60642 -14.15517 -13.95475 -13.67810 -13.66776 -13.18142 -12.91510 -12.77457 -12.61505 -12.36916 -12.16228 -12.05456 -11.92643 -11.77209 -11.67324 -11.57510 -11.52745 -11.31522 -10.96186 -10.78254 -10.70283 -10.45415 -10.34293 -10.18065 -10.10397 -9.86470 -9.82138 -9.65434 -9.12238 -8.92619 -8.29993 -7.97527 -6.92596 -5.79491 -3.04943 0.79872 1.86358 2.66648 3.40049 3.49303 3.56680 3.61698 3.66831 3.92372 4.47635 4.61950 4.63617 4.82818 5.04693 5.09950 5.14747 5.16543 5.23120 5.39535 5.42937 5.52024 5.54384 5.58819 5.68975 5.74892 5.79729 5.90370 5.92615 5.98185 6.02342 6.06741 6.10090 6.16735 6.19422 6.25928 6.37160 6.42839 6.46486 6.53981 6.57730 6.61319 6.68114 6.87570 7.07176 7.12189 7.25039 7.73569 8.13334 8.26683 8.40737 8.98909 9.52968 10.05899 10.41799 11.42907 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.003656 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.835677 B = 7656.879559 C = 9539.829855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.081 0.919 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.226 4.226 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.935 5.935 13 Si 0.894 3.106 14 H -0.283 1.283 15 H -0.286 1.286 16 H -0.294 1.294 17 N -0.697 5.697 18 C 0.531 3.469 19 O -0.569 6.569 20 C -0.141 4.141 21 C -0.110 4.110 22 C 0.087 3.913 23 N -0.492 5.492 24 C 0.141 3.859 25 C -0.245 4.245 26 C -0.020 4.020 27 C -0.245 4.245 28 C 0.507 3.493 29 O -0.540 6.540 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.378 0.622 39 H 0.253 0.747 40 H 0.405 0.595 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.160 0.840 48 H 0.142 0.858 49 H 0.131 0.869 50 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 2.880 9.054 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.099 0.901 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.357 4.357 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.585 5.585 13 Si 0.725 3.275 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.221 1.221 17 N -0.349 5.349 18 C 0.318 3.682 19 O -0.449 6.449 20 C -0.181 4.181 21 C -0.149 4.149 22 C -0.034 4.034 23 N -0.202 5.202 24 C 0.012 3.988 25 C -0.268 4.268 26 C -0.042 4.042 27 C -0.267 4.267 28 C 0.308 3.692 29 O -0.421 6.421 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.213 0.787 39 H 0.063 0.937 40 H 0.242 0.758 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.109 0.891 47 H 0.177 0.823 48 H 0.159 0.841 49 H 0.149 0.851 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.365 3.659 8.590 15.494 hybrid contribution 0.959 -0.497 0.488 1.186 sum -11.405 3.162 9.078 14.916 Atomic orbital electron populations 1.22197 0.96485 1.01470 1.01788 1.20770 0.92317 0.97716 0.84803 0.90108 1.22200 0.97795 1.00546 0.96623 1.20283 0.89717 0.95875 0.88217 0.93493 1.22422 1.01533 1.00315 0.98087 1.42446 1.18688 1.39956 1.34809 1.19246 0.93194 1.12918 1.10370 0.91498 1.24528 0.98350 0.98561 0.98878 1.69601 1.37954 1.24740 1.26193 0.86313 0.84621 0.77359 0.79190 1.20856 1.21270 1.22141 1.45960 1.65903 1.14396 1.08671 1.20312 0.76140 0.86844 0.84886 1.90608 1.52016 1.16407 1.85872 1.21576 1.05899 0.98344 0.92308 1.21558 1.01937 0.98994 0.92367 1.22160 1.05346 0.90836 0.85036 1.45672 1.12835 1.35812 1.25854 1.21991 0.90593 0.96251 0.89924 1.20585 1.00828 1.03268 1.02153 1.21384 0.91839 0.94569 0.96418 1.22145 1.01689 1.04422 0.98441 1.17231 0.82354 0.82537 0.87054 1.91044 1.34231 1.67277 1.49537 0.92283 0.92897 0.92541 0.91796 0.90967 0.94629 0.92888 0.93623 0.78734 0.93735 0.75764 0.85721 0.89820 0.91546 0.90443 0.87609 0.89098 0.82266 0.84053 0.85122 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.15 2.40 2.57 -67.93 -0.17 2.23 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.13 -2.00 4.43 -26.73 -0.12 -2.12 16 5 C 0.17 3.16 2.89 -67.93 -0.20 2.97 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 8 N -0.72 -16.09 3.84 -53.42 -0.21 -16.29 16 9 C -0.23 -5.94 9.93 -15.06 -0.15 -6.09 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.94 -24.99 12.78 55.49 0.71 -24.28 16 13 Si 0.89 22.75 29.55 -169.99 -5.02 17.73 16 14 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 16 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 17 N -0.70 -12.29 3.80 -53.81 -0.20 -12.49 16 18 C 0.53 10.25 7.79 -10.98 -0.09 10.16 16 19 O -0.57 -12.50 15.64 5.56 0.09 -12.42 16 20 C -0.14 -2.40 5.70 -27.88 -0.16 -2.56 16 21 C -0.11 -1.77 4.83 -26.73 -0.13 -1.90 16 22 C 0.09 1.21 5.33 -4.04 -0.02 1.18 16 23 N -0.49 -6.62 2.58 -119.77 -0.31 -6.93 16 24 C 0.14 1.32 10.28 -16.84 -0.17 1.15 16 25 C -0.24 -2.03 10.01 -39.88 -0.40 -2.43 16 26 C -0.02 -0.19 10.10 -39.51 -0.40 -0.59 16 27 C -0.24 -3.17 9.99 -39.38 -0.39 -3.57 16 28 C 0.51 8.42 7.41 -15.44 -0.11 8.30 16 29 O -0.54 -11.71 16.64 4.87 0.08 -11.63 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.38 8.59 5.70 -40.82 -0.23 8.36 16 39 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.40 7.18 6.51 -40.82 -0.27 6.92 16 41 H 0.12 2.56 7.87 -51.93 -0.41 2.15 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 44 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 45 H 0.11 1.77 7.39 -51.93 -0.38 1.39 16 46 H 0.09 0.91 8.01 -51.93 -0.42 0.49 16 47 H 0.16 0.92 8.04 -52.49 -0.42 0.50 16 48 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 50 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 410.87 15.07 6.19 6.19 Total: -1.00 -33.53 410.87 -8.98 -42.51 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -8.40 Total: 15.47 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.90 Total: 2.14 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.01 Total: -60.00 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.53 -8.98 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135224730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.275 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds