Wall clock time and date at job start Tue Mar 31 2020 19:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47102 * 2 1 4 4 C 1.52997 * 109.47131 * 239.99995 * 2 1 3 5 5 C 1.53003 * 109.47075 * 175.00049 * 4 2 1 6 6 H 1.09002 * 109.46812 * 304.99801 * 5 4 2 7 7 C 1.53005 * 109.47206 * 185.00023 * 5 4 2 8 8 N 1.46501 * 109.47081 * 64.99924 * 5 4 2 9 9 C 1.36935 * 120.00030 * 205.00270 * 8 5 4 10 10 H 1.07999 * 119.99947 * 359.97438 * 9 8 5 11 11 C 1.38808 * 120.00336 * 180.02562 * 9 8 5 12 12 N 1.31622 * 119.99630 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00201 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47448 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47123 * 119.99792 * 13 11 9 16 16 H 1.48500 * 109.47166 * 239.99413 * 13 11 9 17 17 N 1.46500 * 109.46929 * 120.00115 * 2 1 3 18 18 C 1.34776 * 119.99501 * 274.99629 * 17 2 1 19 19 O 1.21278 * 120.00497 * 0.02562 * 18 17 2 20 20 C 1.50707 * 119.99636 * 179.97438 * 18 17 2 21 21 C 1.52999 * 109.46862 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.46816 * 180.02562 * 21 20 18 23 23 N 1.46507 * 109.47241 * 180.02562 * 22 21 20 24 24 C 1.35763 * 119.62574 * 90.00014 * 23 22 21 25 25 C 1.35346 * 120.69997 * 180.27933 * 24 23 22 26 26 C 1.40202 * 119.94860 * 359.43664 * 25 24 23 27 27 C 1.36395 * 119.26120 * 0.57668 * 26 25 24 28 28 C 1.34664 * 119.61981 * 270.02413 * 23 22 21 29 29 O 1.22055 * 119.98569 * 359.97438 * 28 23 22 30 30 H 1.09003 * 109.47234 * 60.00237 * 1 2 3 31 31 H 1.08997 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47219 * 299.99966 * 1 2 3 33 33 H 1.09001 * 109.47571 * 294.99706 * 4 2 1 34 34 H 1.09003 * 109.47578 * 55.00403 * 4 2 1 35 35 H 1.08996 * 109.46972 * 59.99913 * 7 5 4 36 36 H 1.09000 * 109.46988 * 179.97438 * 7 5 4 37 37 H 1.08999 * 109.46565 * 299.99711 * 7 5 4 38 38 H 0.97000 * 120.00047 * 25.00184 * 8 5 4 39 39 H 0.97005 * 119.99616 * 180.02562 * 12 11 9 40 40 H 0.96999 * 120.00008 * 95.00289 * 17 2 1 41 41 H 1.08998 * 109.46925 * 60.00402 * 20 18 17 42 42 H 1.09001 * 109.47148 * 300.00322 * 20 18 17 43 43 H 1.09004 * 109.46770 * 60.00629 * 21 20 18 44 44 H 1.08991 * 109.47766 * 300.00411 * 21 20 18 45 45 H 1.08991 * 109.47264 * 60.00501 * 22 21 20 46 46 H 1.09001 * 109.47142 * 300.00136 * 22 21 20 47 47 H 1.08002 * 119.64669 * 359.97438 * 24 23 22 48 48 H 1.07996 * 120.02410 * 179.69320 * 25 24 23 49 49 H 1.08002 * 120.36615 * 180.31976 * 26 25 24 50 50 H 1.08002 * 120.34395 * 179.74309 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.8570 0.4359 -1.2678 7 6 4.0646 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3943 -0.9855 0.2808 10 1 5.9388 -0.1794 -0.1883 11 6 5.9525 -1.6689 1.3523 12 7 5.2890 -2.6517 1.9236 13 14 7.6451 -1.1937 1.9835 14 1 8.1764 -0.0667 1.1756 15 1 7.5446 -0.7794 3.4060 16 1 8.5603 -2.3578 1.8706 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6488 -0.7288 3.5878 21 6 2.6998 0.2543 4.7590 22 6 3.2098 -0.4670 6.0083 23 7 3.2581 0.4741 7.1300 24 6 2.1719 0.6195 7.9314 25 6 2.1907 1.4867 8.9703 26 6 3.3449 2.2375 9.2345 27 6 4.4350 2.0904 8.4280 28 6 4.3793 1.1855 7.3542 29 8 5.3477 1.0438 6.6249 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.6264 -0.6886 -3.4657 36 1 5.1508 -1.1477 -2.6701 37 1 3.7723 -2.2741 -2.6698 38 1 3.6647 -2.0584 0.2387 39 1 5.6789 -3.1290 2.6727 40 1 2.2490 -1.6318 1.1526 41 1 3.6479 -1.1213 3.3986 42 1 1.9758 -1.5506 3.8326 43 1 1.7004 0.6464 4.9480 44 1 3.3724 1.0763 4.5145 45 1 4.2091 -0.8588 5.8191 46 1 2.5374 -1.2892 6.2530 47 1 1.2816 0.0405 7.7348 48 1 1.3187 1.5972 9.5978 49 1 3.3691 2.9277 10.0649 50 1 5.3318 2.6630 8.6130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135224730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:17 Heat of formation + Delta-G solvation = -58.893842 kcal Electronic energy + Delta-G solvation = -29944.807608 eV Core-core repulsion = 25971.633140 eV Total energy + Delta-G solvation = -3973.174468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32231 -40.77033 -38.40608 -38.00723 -36.51940 -35.74867 -34.10224 -33.66980 -31.99764 -30.80137 -30.25958 -28.32721 -27.57641 -25.60260 -24.99860 -24.33644 -22.93839 -22.02842 -21.68045 -20.89250 -19.14338 -18.66597 -18.30370 -17.71862 -17.33095 -17.03399 -16.72487 -16.60824 -16.55004 -15.66903 -15.57377 -15.44197 -15.15142 -15.05457 -14.63563 -14.27974 -14.19737 -13.94583 -13.57656 -13.39230 -13.31807 -13.23557 -12.98118 -12.94633 -12.82348 -12.80121 -12.69326 -12.58264 -12.55753 -12.29385 -12.16616 -11.83000 -11.71610 -11.63316 -11.41100 -11.10657 -11.01536 -10.91236 -10.65959 -9.78820 -8.96975 -8.83740 -7.91479 -5.10949 -0.05928 0.92962 1.36304 1.44881 1.48631 1.64872 1.87003 2.51561 2.56029 2.71020 3.43723 3.63489 3.72353 3.80096 3.87653 3.97009 4.01745 4.04385 4.15634 4.19293 4.29120 4.34403 4.39848 4.45681 4.51907 4.57594 4.59037 4.70951 4.79984 4.83832 4.87732 4.94230 5.05828 5.09024 5.12459 5.13676 5.17192 5.18888 5.24246 5.38450 5.39063 5.42229 5.57892 5.63005 5.70312 5.84632 6.12929 6.33749 6.79140 7.01162 7.43460 7.49210 8.15477 8.43557 9.29920 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.003656 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.835677 B = 7656.879559 C = 9539.829855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.144 3.856 3 H 0.048 0.952 4 C -0.119 4.119 5 C 0.160 3.840 6 H 0.024 0.976 7 C -0.154 4.154 8 N -0.717 5.717 9 C -0.223 4.223 10 H 0.052 0.948 11 C -0.041 4.041 12 N -0.937 5.937 13 Si 0.926 3.074 14 H -0.284 1.284 15 H -0.312 1.312 16 H -0.290 1.290 17 N -0.691 5.691 18 C 0.521 3.479 19 O -0.602 6.602 20 C -0.133 4.133 21 C -0.096 4.096 22 C 0.093 3.907 23 N -0.493 5.493 24 C 0.131 3.869 25 C -0.232 4.232 26 C 0.011 3.989 27 C -0.290 4.290 28 C 0.483 3.517 29 O -0.623 6.623 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.050 0.950 38 H 0.377 0.623 39 H 0.249 0.751 40 H 0.406 0.594 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.022 0.978 45 H 0.064 0.936 46 H 0.144 0.856 47 H 0.207 0.793 48 H 0.189 0.811 49 H 0.171 0.829 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 2.040 9.689 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 H 0.067 0.933 4 C -0.157 4.157 5 C 0.052 3.948 6 H 0.042 0.958 7 C -0.213 4.213 8 N -0.360 5.360 9 C -0.356 4.356 10 H 0.070 0.930 11 C -0.236 4.236 12 N -0.588 5.588 13 Si 0.760 3.240 14 H -0.210 1.210 15 H -0.241 1.241 16 H -0.217 1.217 17 N -0.342 5.342 18 C 0.309 3.691 19 O -0.485 6.485 20 C -0.173 4.173 21 C -0.134 4.134 22 C -0.028 4.028 23 N -0.201 5.201 24 C 0.005 3.995 25 C -0.254 4.254 26 C -0.011 4.011 27 C -0.312 4.312 28 C 0.288 3.712 29 O -0.511 6.511 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.212 0.788 39 H 0.058 0.942 40 H 0.243 0.757 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.105 0.895 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.162 0.838 47 H 0.224 0.776 48 H 0.207 0.793 49 H 0.189 0.811 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.782 2.810 9.203 19.345 hybrid contribution 2.188 -0.151 0.328 2.218 sum -14.594 2.658 9.532 17.632 Atomic orbital electron populations 1.22074 0.93609 1.02800 1.02200 1.20915 0.94497 0.95968 0.84691 0.93338 1.22114 0.94520 1.01708 0.97347 1.20508 0.92422 0.94189 0.87676 0.95799 1.22269 0.99997 1.00951 0.98125 1.42467 1.17498 1.40164 1.35894 1.19281 0.94529 1.11883 1.09908 0.92990 1.24796 0.99582 0.99474 0.99710 1.69610 1.37963 1.24967 1.26224 0.85791 0.83889 0.77104 0.77215 1.20953 1.24078 1.21665 1.46013 1.65115 1.14306 1.08791 1.20719 0.75872 0.86582 0.85949 1.90582 1.53725 1.17746 1.86472 1.21513 1.04497 0.99430 0.91897 1.21391 1.01530 0.97322 0.93196 1.22075 1.04148 0.91899 0.84678 1.45646 1.13348 1.35048 1.26060 1.22910 0.90345 0.96978 0.89272 1.21245 1.01489 1.01130 1.01500 1.21902 0.90395 0.93399 0.95386 1.22072 1.03722 1.05838 0.99552 1.17876 0.82432 0.83380 0.87514 1.90982 1.37194 1.70321 1.52607 0.89903 0.91007 0.94142 0.90204 0.87500 0.91250 0.95420 0.93059 0.78776 0.94157 0.75673 0.89421 0.85649 0.89505 0.95939 0.91729 0.83841 0.77621 0.79344 0.81134 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.48 71.98 0.68 -2.88 16 2 C 0.14 4.47 2.57 44.99 0.12 4.58 16 3 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 4 C -0.12 -3.25 4.43 30.59 0.14 -3.11 16 5 C 0.16 5.88 2.89 44.99 0.13 6.01 16 6 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 7 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 8 N -0.72 -32.43 3.84 -322.93 -1.24 -33.67 16 9 C -0.22 -12.09 9.93 84.03 0.83 -11.26 16 10 H 0.05 2.93 7.83 -2.91 -0.02 2.91 16 11 C -0.04 -2.30 5.50 84.86 0.47 -1.83 16 12 N -0.94 -51.23 12.78 21.65 0.28 -50.95 16 13 Si 0.93 48.91 29.55 68.60 2.03 50.94 16 14 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 15 H -0.31 -17.78 7.11 99.48 0.71 -17.07 16 16 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 17 N -0.69 -24.19 3.80 -442.54 -1.68 -25.87 16 18 C 0.52 20.53 7.79 87.66 0.68 21.22 16 19 O -0.60 -27.40 15.64 -3.02 -0.05 -27.44 16 20 C -0.13 -4.64 5.70 29.85 0.17 -4.47 16 21 C -0.10 -3.20 4.83 30.59 0.15 -3.05 16 22 C 0.09 2.64 5.33 86.38 0.46 3.10 16 23 N -0.49 -13.34 2.58 -650.97 -1.68 -15.02 16 24 C 0.13 1.99 10.28 83.42 0.86 2.85 16 25 C -0.23 -2.75 10.01 22.08 0.22 -2.53 16 26 C 0.01 0.18 10.10 22.32 0.23 0.40 16 27 C -0.29 -7.86 9.99 22.40 0.22 -7.64 16 28 C 0.48 17.38 7.41 84.82 0.63 18.01 16 29 O -0.62 -30.57 16.64 -5.49 -0.09 -30.67 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.38 17.07 5.70 -92.71 -0.53 16.55 16 39 H 0.25 13.61 8.31 -92.70 -0.77 12.84 16 40 H 0.41 14.10 6.51 -92.71 -0.60 13.49 16 41 H 0.09 3.82 7.87 -2.39 -0.02 3.80 16 42 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 44 H 0.02 0.97 8.10 -2.39 -0.02 0.95 16 45 H 0.06 2.39 7.39 -2.39 -0.02 2.37 16 46 H 0.14 2.48 8.01 -2.39 -0.02 2.46 16 47 H 0.21 1.14 8.04 -2.91 -0.02 1.12 16 48 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 49 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 50 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -83.82 410.87 4.02 -79.80 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.21 Total: 37.83 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.67 Total: 15.05 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -4.33 Total: -125.51 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -0.14 Total: -58.11 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -83.82 4.02 -79.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135224730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.910 kcal (2) G-P(sol) polarization free energy of solvation -83.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds