Wall clock time and date at job start Tue Mar 31 2020 19:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47047 * 179.97438 * 12 11 9 14 14 N 1.46497 * 109.46965 * 180.02562 * 13 12 11 15 15 C 1.35764 * 119.62350 * 90.00864 * 14 13 12 16 16 C 1.35348 * 120.70338 * 179.97438 * 15 14 13 17 17 C 1.40190 * 119.95030 * 0.02562 * 16 15 14 18 18 C 1.36406 * 119.26260 * 0.02562 * 17 16 15 19 19 C 1.34660 * 119.62654 * 269.72899 * 14 13 12 20 20 O 1.22055 * 119.98658 * 359.97438 * 19 14 13 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.09000 * 109.47421 * 300.00764 * 13 12 11 44 44 H 1.09003 * 109.46623 * 60.00257 * 13 12 11 45 45 H 1.08003 * 119.65030 * 359.97438 * 15 14 13 46 46 H 1.07998 * 120.02404 * 179.97438 * 16 15 14 47 47 H 1.07998 * 120.37383 * 179.97438 * 17 16 15 48 48 H 1.08005 * 120.34439 * 180.02562 * 18 17 16 49 49 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3699 4.3369 -0.9153 14 7 8.7247 4.5428 -0.3975 15 6 9.7905 4.3803 -1.2228 16 6 11.0516 4.5655 -0.7675 17 6 11.2669 4.9285 0.5693 18 6 10.1949 5.0902 1.3972 19 6 8.8987 4.8966 0.8901 20 8 7.9303 5.0443 1.6183 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.6547 -1.0591 -3.4193 36 1 5.1716 -1.3615 -2.5380 37 1 3.8002 -2.4818 -2.3594 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7276 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 7.3443 4.5882 -1.9756 44 1 6.6724 4.9758 -0.3736 45 1 9.6303 4.1003 -2.2535 46 1 11.8914 4.4329 -1.4335 47 1 12.2703 5.0776 0.9399 48 1 10.3406 5.3701 2.4302 49 1 2.2490 -1.6318 1.1526 50 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135224731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:22 Heat of formation + Delta-G solvation = -42.659615 kcal Electronic energy + Delta-G solvation = -29058.364399 eV Core-core repulsion = 25085.893900 eV Total energy + Delta-G solvation = -3972.470499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50455 -39.63560 -37.08709 -36.99940 -35.68475 -34.57254 -32.94852 -32.26806 -30.70609 -30.04999 -28.28162 -27.52678 -26.37271 -24.28049 -23.54384 -23.32236 -22.05638 -21.03730 -20.17106 -19.85309 -17.94096 -17.50925 -17.34640 -16.77085 -16.47062 -15.95035 -15.72950 -15.62535 -14.90345 -14.74508 -14.35322 -14.20421 -14.07576 -13.57127 -13.51470 -13.22519 -13.05836 -12.92748 -12.58238 -12.34941 -12.17193 -12.13278 -11.99428 -11.91300 -11.76888 -11.68029 -11.64898 -11.00811 -10.93883 -10.66463 -10.46228 -10.40683 -10.32056 -10.07256 -10.05391 -9.91417 -9.52812 -9.07174 -8.82163 -8.72100 -8.17590 -6.93324 -5.99399 -2.98872 0.61306 1.67863 2.41170 2.94678 3.40017 3.51791 3.60310 3.67202 3.78106 4.26683 4.36393 4.61837 4.65360 4.76911 4.79053 4.86182 5.00143 5.01747 5.03912 5.14050 5.26633 5.28532 5.36998 5.41320 5.49039 5.60971 5.70469 5.74723 5.82612 5.83966 5.88153 5.90075 5.94166 6.04227 6.06629 6.14516 6.22834 6.29187 6.31255 6.38352 6.48572 6.63836 6.78640 6.88692 6.89124 7.02701 7.78720 7.90259 7.90453 8.55182 8.86165 9.32804 10.18954 10.33255 11.49178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.003022 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.558315 B = 9263.403448 C =11155.442101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.101 0.899 7 C -0.160 4.160 8 N -0.718 5.718 9 C 0.513 3.487 10 O -0.534 6.534 11 C -0.136 4.136 12 C -0.118 4.118 13 C 0.089 3.911 14 N -0.494 5.494 15 C 0.136 3.864 16 C -0.238 4.238 17 C -0.020 4.020 18 C -0.242 4.242 19 C 0.510 3.490 20 O -0.544 6.544 21 N -0.731 5.731 22 C -0.326 4.326 23 H 0.061 0.939 24 C -0.043 4.043 25 N -0.944 5.944 26 Si 1.077 2.923 27 H -0.295 1.295 28 H -0.296 1.296 29 H -0.288 1.288 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.394 0.606 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.160 0.840 46 H 0.143 0.857 47 H 0.133 0.867 48 H 0.147 0.853 49 H 0.365 0.635 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 13.604 -18.996 26.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.040 3.960 6 H 0.119 0.881 7 C -0.218 4.218 8 N -0.369 5.369 9 C 0.299 3.701 10 O -0.410 6.410 11 C -0.177 4.177 12 C -0.157 4.157 13 C -0.032 4.032 14 N -0.205 5.205 15 C 0.008 3.992 16 C -0.262 4.262 17 C -0.041 4.041 18 C -0.264 4.264 19 C 0.311 3.689 20 O -0.425 6.425 21 N -0.374 5.374 22 C -0.457 4.457 23 H 0.079 0.921 24 C -0.241 4.241 25 N -0.590 5.590 26 Si 0.909 3.091 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.214 1.214 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.178 0.822 46 H 0.161 0.839 47 H 0.151 0.849 48 H 0.165 0.835 49 H 0.198 0.802 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.216 13.224 -16.503 24.422 hybrid contribution -0.703 0.136 -1.898 2.029 sum 11.512 13.360 -18.401 25.488 Atomic orbital electron populations 1.22444 0.99505 1.00698 0.99864 1.20151 0.91521 0.95538 0.86076 0.93514 1.22187 0.93889 1.02055 0.98940 1.20981 0.94931 0.80516 0.99606 0.88144 1.22176 1.01468 1.00131 0.98058 1.45959 1.16553 1.11506 1.62866 1.20419 0.81948 0.89968 0.77780 1.90736 1.51177 1.56702 1.42365 1.21529 0.98213 0.94986 1.02926 1.21637 0.95749 0.93991 1.04302 1.22080 0.82123 0.98901 1.00090 1.45581 1.08127 1.55415 1.11356 1.21965 0.86975 0.93975 0.96253 1.20633 0.96017 1.12154 0.97369 1.21427 0.99469 0.90380 0.92872 1.22176 0.91260 1.10684 1.02310 1.17219 0.91529 0.79467 0.80665 1.91010 1.42382 1.53555 1.55570 1.42400 1.79137 1.09638 1.06262 1.19973 1.41699 0.94890 0.89111 0.92078 1.25664 0.99414 0.97480 1.01527 1.70845 1.51569 1.08229 1.28346 0.83269 0.75964 0.74167 0.75723 1.22261 1.22249 1.21446 0.94626 0.93695 0.92832 0.90868 0.91948 0.93108 0.92562 0.91865 0.77275 0.89057 0.88431 0.89785 0.90758 0.89096 0.87905 0.82228 0.83899 0.84920 0.83496 0.80170 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.49 37.16 0.35 -2.60 16 2 C 0.18 3.43 2.84 -67.93 -0.19 3.24 16 3 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 4 C -0.13 -2.02 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.33 2.52 -67.93 -0.17 2.15 16 6 H 0.10 2.17 7.05 -51.93 -0.37 1.81 16 7 C -0.16 -2.17 9.48 37.16 0.35 -1.81 16 8 N -0.72 -10.18 4.45 -53.80 -0.24 -10.42 16 9 C 0.51 8.12 7.79 -10.98 -0.09 8.04 16 10 O -0.53 -11.17 15.64 5.56 0.09 -11.08 16 11 C -0.14 -1.47 5.70 -27.88 -0.16 -1.63 16 12 C -0.12 -1.41 4.83 -26.73 -0.13 -1.54 16 13 C 0.09 0.82 5.34 -4.04 -0.02 0.80 16 14 N -0.49 -5.14 2.58 -119.77 -0.31 -5.45 16 15 C 0.14 0.95 10.28 -16.84 -0.17 0.77 16 16 C -0.24 -1.54 10.01 -39.88 -0.40 -1.94 16 17 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 18 C -0.24 -2.68 9.99 -39.38 -0.39 -3.07 16 19 C 0.51 7.08 7.41 -15.45 -0.11 6.96 16 20 O -0.54 -9.98 16.64 4.87 0.08 -9.90 16 21 N -0.73 -18.33 4.49 -53.43 -0.24 -18.57 16 22 C -0.33 -9.40 9.93 -15.06 -0.15 -9.55 16 23 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 24 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 25 N -0.94 -30.38 13.70 55.49 0.76 -29.62 16 26 Si 1.08 27.78 29.92 -169.99 -5.09 22.69 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.39 4.29 8.60 -40.82 -0.35 3.94 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 42 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.09 0.47 8.01 -51.93 -0.42 0.05 16 44 H 0.10 1.09 7.38 -51.93 -0.38 0.70 16 45 H 0.16 0.53 8.04 -52.48 -0.42 0.10 16 46 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 49 H 0.37 9.57 6.63 -40.82 -0.27 9.30 16 50 H 0.25 8.03 6.77 -40.82 -0.28 7.75 16 LS Contribution 413.90 15.07 6.24 6.24 Total: -1.00 -40.05 413.90 -9.02 -49.07 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -8.42 Total: 11.30 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.89 Total: -4.28 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.03 Total: -64.05 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.17 Total: -20.98 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: -5.09 Total: 22.69 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -40.05 -9.02 -49.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135224731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.415 kcal (2) G-P(sol) polarization free energy of solvation -40.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds