Wall clock time and date at job start Tue Mar 31 2020 19:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47047 * 179.97438 * 12 11 9 14 14 N 1.46497 * 109.46965 * 180.02562 * 13 12 11 15 15 C 1.35764 * 119.62350 * 90.00864 * 14 13 12 16 16 C 1.35348 * 120.70338 * 179.97438 * 15 14 13 17 17 C 1.40190 * 119.95030 * 0.02562 * 16 15 14 18 18 C 1.36406 * 119.26260 * 0.02562 * 17 16 15 19 19 C 1.34660 * 119.62654 * 269.72899 * 14 13 12 20 20 O 1.22055 * 119.98658 * 359.97438 * 19 14 13 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 36 36 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 37 37 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 38 38 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 39 39 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 40 40 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 41 41 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 42 42 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 43 43 H 1.09000 * 109.47421 * 300.00764 * 13 12 11 44 44 H 1.09003 * 109.46623 * 60.00257 * 13 12 11 45 45 H 1.08003 * 119.65030 * 359.97438 * 15 14 13 46 46 H 1.07998 * 120.02404 * 179.97438 * 16 15 14 47 47 H 1.07998 * 120.37383 * 179.97438 * 17 16 15 48 48 H 1.08005 * 120.34439 * 180.02562 * 18 17 16 49 49 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3699 4.3369 -0.9153 14 7 8.7247 4.5428 -0.3975 15 6 9.7905 4.3803 -1.2228 16 6 11.0516 4.5655 -0.7675 17 6 11.2669 4.9285 0.5693 18 6 10.1949 5.0902 1.3972 19 6 8.8987 4.8966 0.8901 20 8 7.9303 5.0443 1.6183 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.6547 -1.0591 -3.4193 36 1 5.1716 -1.3615 -2.5380 37 1 3.8002 -2.4818 -2.3594 38 1 3.3284 1.4130 -1.9027 39 1 5.5290 2.9085 -2.3301 40 1 4.8577 3.2954 -0.7276 41 1 6.9954 2.6202 0.3316 42 1 7.6673 2.2333 -1.2706 43 1 7.3443 4.5882 -1.9756 44 1 6.6724 4.9758 -0.3736 45 1 9.6303 4.1003 -2.2535 46 1 11.8914 4.4329 -1.4335 47 1 12.2703 5.0776 0.9399 48 1 10.3406 5.3701 2.4302 49 1 2.2490 -1.6318 1.1526 50 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135224731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:21 Heat of formation + Delta-G solvation = -71.966231 kcal Electronic energy + Delta-G solvation = -29059.635230 eV Core-core repulsion = 25085.893900 eV Total energy + Delta-G solvation = -3973.741329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.31613 -40.91147 -38.55008 -37.98983 -36.60398 -36.17672 -34.22694 -33.81734 -31.99072 -30.78898 -30.20773 -28.40316 -27.67206 -25.60450 -25.03060 -24.35867 -22.97876 -22.27183 -21.45242 -21.31210 -19.51529 -18.75828 -18.28882 -17.86896 -17.35389 -17.11319 -16.82699 -16.63245 -16.55222 -16.02192 -15.59671 -15.52570 -15.24969 -15.09353 -14.76246 -14.63920 -14.40753 -13.95029 -13.59528 -13.49980 -13.30734 -13.19587 -13.03585 -12.98898 -12.85568 -12.82794 -12.70451 -12.58966 -12.54838 -12.20328 -11.93828 -11.89041 -11.86617 -11.59302 -11.21998 -11.11825 -11.00812 -10.96675 -10.81392 -10.00367 -9.08679 -8.96429 -8.39164 -5.30233 -0.06732 0.92914 1.48283 1.59709 1.65771 1.71814 1.72306 2.31604 2.65817 2.69893 3.39791 3.63734 3.66422 3.72188 3.76467 3.85236 3.93300 3.97201 4.04039 4.14400 4.28643 4.29981 4.30472 4.42904 4.45491 4.50294 4.56321 4.60689 4.64714 4.70515 4.75270 4.85094 4.93767 4.98502 4.99723 5.07097 5.15410 5.16977 5.22361 5.25616 5.35257 5.40258 5.52357 5.57614 5.65180 5.69302 6.11231 6.49916 6.65174 7.00083 7.11995 7.39041 8.02730 8.12971 9.13396 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.003022 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.558315 B = 9263.403448 C =11155.442101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.035 0.965 7 C -0.148 4.148 8 N -0.705 5.705 9 C 0.500 3.500 10 O -0.597 6.597 11 C -0.124 4.124 12 C -0.110 4.110 13 C 0.093 3.907 14 N -0.495 5.495 15 C 0.134 3.866 16 C -0.236 4.236 17 C 0.007 3.993 18 C -0.293 4.293 19 C 0.486 3.514 20 O -0.617 6.617 21 N -0.743 5.743 22 C -0.313 4.313 23 H 0.059 0.941 24 C -0.109 4.109 25 N -0.979 5.979 26 Si 1.118 2.882 27 H -0.301 1.301 28 H -0.269 1.269 29 H -0.288 1.288 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.414 0.586 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.019 0.981 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.082 0.918 45 H 0.210 0.790 46 H 0.185 0.815 47 H 0.165 0.835 48 H 0.136 0.864 49 H 0.355 0.645 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.210 15.379 -23.867 30.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.060 0.940 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.053 0.947 7 C -0.206 4.206 8 N -0.358 5.358 9 C 0.288 3.712 10 O -0.478 6.478 11 C -0.164 4.164 12 C -0.149 4.149 13 C -0.028 4.028 14 N -0.204 5.204 15 C 0.008 3.992 16 C -0.258 4.258 17 C -0.015 4.015 18 C -0.314 4.314 19 C 0.292 3.708 20 O -0.505 6.505 21 N -0.386 5.386 22 C -0.445 4.445 23 H 0.077 0.923 24 C -0.300 4.300 25 N -0.628 5.628 26 Si 0.945 3.055 27 H -0.229 1.229 28 H -0.194 1.194 29 H -0.214 1.214 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.168 0.832 40 H 0.121 0.879 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.169 0.831 44 H 0.101 0.899 45 H 0.226 0.774 46 H 0.202 0.798 47 H 0.183 0.817 48 H 0.154 0.846 49 H 0.187 0.813 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.446 15.048 -21.482 29.031 hybrid contribution -0.705 -0.411 -0.566 0.993 sum 11.741 14.637 -22.048 28.952 Atomic orbital electron populations 1.22290 0.97620 1.00806 1.00782 1.20491 0.92657 0.95208 0.85715 0.94020 1.22088 0.92993 1.02025 0.98491 1.20771 0.95351 0.81897 0.97994 0.94690 1.22056 1.00413 0.99979 0.98200 1.45859 1.16511 1.11207 1.62178 1.21394 0.81657 0.91641 0.76476 1.90715 1.53121 1.58813 1.45145 1.21570 0.97181 0.91136 1.06498 1.21514 0.97044 0.96074 1.00297 1.22173 0.81380 0.96233 1.02971 1.45631 1.09734 1.54270 1.10716 1.22883 0.86177 0.92433 0.97736 1.21226 0.97236 1.10281 0.97061 1.21884 0.99775 0.86733 0.93109 1.22118 0.91445 1.14902 1.02977 1.17712 0.91767 0.79661 0.81698 1.90944 1.44307 1.57663 1.57609 1.42620 1.79460 1.09328 1.07161 1.20262 1.38991 0.94814 0.90423 0.92261 1.26905 1.00366 0.97732 1.04983 1.70943 1.54536 1.09394 1.27945 0.82732 0.76162 0.73886 0.72743 1.22890 1.19405 1.21417 0.90061 0.93993 0.95500 0.90867 0.87023 0.89439 0.94287 0.91616 0.74843 0.83202 0.87856 0.96181 0.90379 0.83139 0.89923 0.77355 0.79781 0.81702 0.84579 0.81299 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 9.49 71.98 0.68 -4.53 16 2 C 0.17 6.29 2.84 44.99 0.13 6.42 16 3 H 0.04 1.61 7.56 -2.38 -0.02 1.59 16 4 C -0.12 -3.32 4.29 30.60 0.13 -3.19 16 5 C 0.15 4.62 2.52 45.00 0.11 4.73 16 6 H 0.03 1.60 7.05 -2.39 -0.02 1.58 16 7 C -0.15 -3.77 9.48 71.98 0.68 -3.09 16 8 N -0.71 -19.00 4.45 -442.51 -1.97 -20.97 16 9 C 0.50 15.87 7.79 87.66 0.68 16.56 16 10 O -0.60 -26.54 15.64 -3.04 -0.05 -26.59 16 11 C -0.12 -2.47 5.70 29.85 0.17 -2.30 16 12 C -0.11 -2.65 4.83 30.59 0.15 -2.50 16 13 C 0.09 1.59 5.34 86.38 0.46 2.05 16 14 N -0.50 -9.98 2.58 -650.98 -1.68 -11.66 16 15 C 0.13 1.38 10.28 83.42 0.86 2.24 16 16 C -0.24 -2.12 10.01 22.08 0.22 -1.90 16 17 C 0.01 0.09 10.10 22.32 0.23 0.32 16 18 C -0.29 -6.94 9.99 22.40 0.22 -6.72 16 19 C 0.49 14.63 7.41 84.82 0.63 15.26 16 20 O -0.62 -25.44 16.64 -5.49 -0.09 -25.53 16 21 N -0.74 -38.30 4.49 -322.94 -1.45 -39.75 16 22 C -0.31 -18.59 9.93 84.03 0.83 -17.75 16 23 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 24 C -0.11 -6.82 5.50 84.86 0.47 -6.35 16 25 N -0.98 -65.80 13.70 21.65 0.30 -65.50 16 26 Si 1.12 57.96 29.92 68.60 2.05 60.01 16 27 H -0.30 -15.74 7.11 99.48 0.71 -15.04 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 29 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.41 7.59 8.60 -92.71 -0.80 6.79 16 39 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 43 H 0.15 0.77 8.01 -2.39 -0.02 0.75 16 44 H 0.08 1.79 7.38 -2.39 -0.02 1.77 16 45 H 0.21 0.05 8.04 -2.91 -0.02 0.03 16 46 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 47 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 48 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 49 H 0.36 19.52 6.63 -92.71 -0.61 18.91 16 50 H 0.24 16.24 6.77 -92.71 -0.63 15.61 16 Total: -1.00 -101.61 413.90 3.43 -98.18 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.34 Total: 32.58 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.66 Total: -0.76 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -4.80 Total: -137.89 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.14 Total: -52.12 kcal Atomic # 14 Polarization: 57.96 SS G_CDS: 2.05 Total: 60.01 kcal Total: -101.61 3.43 -98.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135224731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.218 kcal (2) G-P(sol) polarization free energy of solvation -101.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds