Wall clock time and date at job start Tue Mar 31 2020 19:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38339 * 119.45778 * 179.70562 * 5 4 2 7 7 C 1.39983 * 118.35043 * 0.55380 * 6 5 4 8 8 C 1.47528 * 120.59958 * 179.75365 * 7 6 5 9 9 O 1.21591 * 119.99910 * 179.97438 * 8 7 6 10 10 N 1.34767 * 119.99782 * 359.97213 * 8 7 6 11 11 C 1.46500 * 120.00330 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46695 * 325.00922 * 11 10 8 13 13 C 1.53001 * 109.47000 * 85.00135 * 11 10 8 14 14 C 1.52997 * 109.47562 * 205.00615 * 11 10 8 15 15 C 1.52995 * 109.47041 * 64.99974 * 14 11 10 16 16 H 1.09001 * 109.47475 * 55.00100 * 15 14 11 17 17 C 1.53010 * 109.46928 * 174.99879 * 15 14 11 18 18 N 1.46501 * 109.47210 * 294.99548 * 15 14 11 19 19 C 1.36938 * 119.99992 * 154.99817 * 18 15 14 20 20 H 1.08004 * 119.99682 * 0.02562 * 19 18 15 21 21 C 1.38810 * 119.99899 * 180.02562 * 19 18 15 22 22 N 1.31616 * 120.00207 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47417 * 60.00288 * 23 21 19 25 25 H 1.48503 * 109.46978 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47164 * 299.99994 * 23 21 19 27 27 C 1.40283 * 118.80285 * 359.73096 * 7 6 5 28 28 O 1.35433 * 119.79869 * 180.02562 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.07998 * 120.82744 * 180.28174 * 6 5 4 39 39 H 0.97007 * 120.00334 * 0.02562 * 10 8 7 40 40 H 1.08993 * 109.47359 * 60.00620 * 13 11 10 41 41 H 1.09001 * 109.47372 * 180.02562 * 13 11 10 42 42 H 1.09003 * 109.47046 * 300.00461 * 13 11 10 43 43 H 1.09002 * 109.46984 * 184.99866 * 14 11 10 44 44 H 1.08993 * 109.46720 * 304.99444 * 14 11 10 45 45 H 1.08997 * 109.47118 * 299.99769 * 17 15 14 46 46 H 1.09001 * 109.46862 * 59.99845 * 17 15 14 47 47 H 1.09000 * 109.46966 * 179.97438 * 17 15 14 48 48 H 0.96995 * 119.99907 * 335.00625 * 18 15 14 49 49 H 0.97003 * 119.99970 * 179.97438 * 22 21 19 50 50 H 0.96696 * 113.99611 * 269.98062 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6212 -0.6592 -3.5459 7 6 2.9443 -2.0175 -3.4453 8 6 3.4413 -2.7602 -4.6191 9 8 3.7192 -3.9397 -4.5193 10 7 3.5872 -2.1312 -5.8021 11 6 4.0812 -2.8684 -6.9677 12 1 4.8157 -3.6068 -6.6460 13 6 2.9128 -3.5775 -7.6554 14 6 4.7346 -1.8930 -7.9488 15 6 5.9772 -1.2764 -7.3035 16 1 6.6455 -2.0704 -6.9701 17 6 6.7000 -0.3974 -8.3263 18 7 5.5769 -0.4604 -6.1546 19 6 6.4626 -0.2311 -5.1357 20 1 7.4565 -0.6515 -5.1794 21 6 6.0831 0.5417 -4.0469 22 7 4.8718 1.0536 -3.9934 23 14 7.2917 0.8550 -2.6574 24 1 8.4900 1.5512 -3.1910 25 1 6.6468 1.7020 -1.6220 26 1 7.6989 -0.4394 -2.0541 27 6 2.7876 -2.6597 -2.2080 28 8 3.0947 -3.9733 -2.0878 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.8914 1.0370 -2.4609 38 1 2.7294 -0.1326 -4.4825 39 1 3.3658 -1.1901 -5.8816 40 1 2.1783 -2.8393 -7.9771 41 1 3.2804 -4.1264 -8.5224 42 1 2.4474 -4.2725 -6.9564 43 1 5.0225 -2.4270 -8.8544 44 1 4.0269 -1.1037 -8.2019 45 1 6.9979 -1.0045 -9.1811 46 1 6.0318 0.3966 -8.6597 47 1 7.5851 0.0423 -7.8664 48 1 4.6844 -0.0826 -6.1155 49 1 4.6065 1.5933 -3.2323 50 1 2.3543 -4.5684 -2.2686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135625273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:18 Heat of formation + Delta-G solvation = -38.375370 kcal Electronic energy + Delta-G solvation = -31218.831249 eV Core-core repulsion = 27246.546529 eV Total energy + Delta-G solvation = -3972.284720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37534 -38.88421 -37.21223 -36.51425 -34.77061 -34.15054 -32.63995 -31.81059 -30.50298 -29.03317 -28.50258 -27.08128 -26.36077 -24.49621 -23.72689 -22.74612 -21.58596 -20.51808 -20.19926 -19.59037 -17.92649 -17.23597 -17.06225 -16.57745 -15.55944 -15.45741 -14.83169 -14.63691 -14.30374 -14.17549 -13.92776 -13.80256 -13.56275 -13.39143 -12.94429 -12.78552 -12.65597 -12.43739 -12.21405 -12.14015 -11.90022 -11.84875 -11.75517 -11.68663 -11.35166 -11.14614 -11.05783 -11.00520 -10.84789 -10.76797 -10.72916 -10.39483 -10.30094 -9.95357 -9.73216 -9.44405 -9.26693 -8.94812 -8.81150 -8.42871 -8.19746 -6.98494 -5.88517 -3.09779 1.16695 1.78079 3.41217 3.44723 3.48018 3.50082 3.77822 3.98674 4.34639 4.55616 4.76190 4.98677 5.06477 5.23565 5.34665 5.39110 5.41778 5.43491 5.51105 5.54204 5.58367 5.66541 5.67253 5.83326 5.85355 5.90295 5.94386 5.95996 5.99221 6.05130 6.06556 6.11988 6.21435 6.30979 6.34357 6.36382 6.39866 6.53373 6.56803 6.60569 6.72589 6.82633 6.98489 7.02412 7.18196 7.65061 7.98101 8.19057 8.32984 8.36556 8.94081 9.44924 9.96651 10.32686 11.34246 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.005328 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.867854 B = 5253.821970 C = 6864.515200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C -0.147 4.147 4 C 0.167 3.833 5 C -0.182 4.182 6 C 0.036 3.964 7 C -0.208 4.208 8 C 0.576 3.424 9 O -0.547 6.547 10 N -0.695 5.695 11 C 0.151 3.849 12 H 0.083 0.917 13 C -0.161 4.161 14 C -0.133 4.133 15 C 0.168 3.832 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.715 5.715 19 C -0.220 4.220 20 H 0.066 0.934 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.898 3.102 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.360 3.640 28 O -0.462 6.462 29 N -0.523 5.523 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.401 0.599 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.376 0.624 49 H 0.255 0.745 50 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 -1.590 -1.929 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.205 4.205 4 C 0.029 3.971 5 C -0.202 4.202 6 C 0.009 3.991 7 C -0.215 4.215 8 C 0.364 3.636 9 O -0.426 6.426 10 N -0.348 5.348 11 C 0.046 3.954 12 H 0.102 0.898 13 C -0.220 4.220 14 C -0.172 4.172 15 C 0.059 3.941 16 H 0.066 0.934 17 C -0.223 4.223 18 N -0.357 5.357 19 C -0.350 4.350 20 H 0.084 0.916 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.730 3.270 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.179 3.821 28 O -0.268 6.268 29 N -0.242 5.242 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.239 0.761 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.211 0.789 49 H 0.065 0.935 50 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.754 -2.705 -0.876 10.160 hybrid contribution 0.371 1.155 -0.044 1.214 sum -9.383 -1.550 -0.920 9.555 Atomic orbital electron populations 1.21781 0.93820 1.02039 1.01942 1.20053 0.95915 0.95535 0.95081 1.21924 1.01877 0.94611 1.02081 1.20955 0.92955 0.88485 0.94682 1.21747 1.04049 1.01375 0.92995 1.21714 0.86425 0.90819 1.00108 1.20989 1.09330 0.96310 0.94867 1.17679 0.77335 0.86252 0.82376 1.90712 1.51434 1.15827 1.84651 1.45854 1.66222 1.13899 1.08836 1.20796 0.95239 0.94094 0.85303 0.89847 1.22203 0.98889 1.00507 1.00397 1.22209 0.98668 0.98516 0.97818 1.20302 0.93129 0.92705 0.88006 0.93354 1.22411 1.01156 1.00160 0.98564 1.42436 1.14643 1.59587 1.19063 1.19175 0.94563 1.24509 0.96800 0.91564 1.24464 0.96770 1.00948 0.98198 1.69466 1.17433 1.39170 1.31695 0.86383 0.80549 0.77691 0.82394 1.21555 1.21688 1.21551 1.19067 0.90710 0.85789 0.86497 1.84757 1.38228 1.11792 1.91984 1.66932 1.15465 1.09955 1.31885 0.92155 0.92376 0.92503 0.89575 0.91750 0.92228 0.92124 0.84495 0.83187 0.76086 0.92871 0.92140 0.92404 0.90757 0.91790 0.94547 0.93616 0.92881 0.78934 0.93517 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 2 C -0.05 -0.62 3.22 -91.77 -0.30 -0.92 16 3 C -0.15 -1.82 8.62 37.16 0.32 -1.50 16 4 C 0.17 2.82 5.79 -82.53 -0.48 2.34 16 5 C -0.18 -3.07 9.15 -39.50 -0.36 -3.43 16 6 C 0.04 0.66 7.96 -38.89 -0.31 0.35 16 7 C -0.21 -4.15 5.90 -104.69 -0.62 -4.77 16 8 C 0.58 11.76 7.74 -12.48 -0.10 11.66 16 9 O -0.55 -12.28 14.86 -16.48 -0.24 -12.53 16 10 N -0.70 -12.35 3.76 -54.85 -0.21 -12.55 16 11 C 0.15 2.38 2.57 -67.93 -0.17 2.21 16 12 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 13 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 14 C -0.13 -1.93 4.43 -26.74 -0.12 -2.05 16 15 C 0.17 3.05 2.89 -67.93 -0.20 2.85 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 C -0.16 -2.71 9.49 37.16 0.35 -2.36 16 18 N -0.71 -15.51 3.84 -53.42 -0.21 -15.71 16 19 C -0.22 -5.60 9.93 -15.06 -0.15 -5.75 16 20 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -23.09 10.71 55.49 0.59 -22.50 16 23 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 C 0.36 7.21 7.77 -16.61 -0.13 7.08 16 28 O -0.46 -8.92 11.66 -39.76 -0.46 -9.38 16 29 N -0.52 -9.97 10.28 -9.21 -0.09 -10.06 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.75 6.47 -51.93 -0.34 0.42 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.14 2.04 6.29 -52.48 -0.33 1.71 16 38 H 0.15 2.75 5.93 -52.49 -0.31 2.44 16 39 H 0.40 7.03 4.61 -40.82 -0.19 6.84 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.38 8.17 5.70 -40.82 -0.23 7.94 16 49 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 50 H 0.39 5.61 9.06 45.56 0.41 6.03 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -30.01 399.44 -8.54 -38.56 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -7.26 Total: 18.50 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.66 Total: 2.50 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.09 Total: -60.83 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.71 Total: -21.91 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.01 -8.54 -38.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.183 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds