Wall clock time and date at job start Tue Mar 31 2020 19:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38339 * 119.45778 * 179.70562 * 5 4 2 7 7 C 1.39983 * 118.35043 * 0.55380 * 6 5 4 8 8 C 1.47528 * 120.59958 * 179.75365 * 7 6 5 9 9 O 1.21591 * 119.99910 * 179.97438 * 8 7 6 10 10 N 1.34767 * 119.99782 * 359.97213 * 8 7 6 11 11 C 1.46500 * 120.00330 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.46695 * 325.00922 * 11 10 8 13 13 C 1.53001 * 109.47000 * 85.00135 * 11 10 8 14 14 C 1.52997 * 109.47562 * 205.00615 * 11 10 8 15 15 C 1.52995 * 109.47041 * 64.99974 * 14 11 10 16 16 H 1.09001 * 109.47475 * 55.00100 * 15 14 11 17 17 C 1.53010 * 109.46928 * 174.99879 * 15 14 11 18 18 N 1.46501 * 109.47210 * 294.99548 * 15 14 11 19 19 C 1.36938 * 119.99992 * 154.99817 * 18 15 14 20 20 H 1.08004 * 119.99682 * 0.02562 * 19 18 15 21 21 C 1.38810 * 119.99899 * 180.02562 * 19 18 15 22 22 N 1.31616 * 120.00207 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47417 * 60.00288 * 23 21 19 25 25 H 1.48503 * 109.46978 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47164 * 299.99994 * 23 21 19 27 27 C 1.40283 * 118.80285 * 359.73096 * 7 6 5 28 28 O 1.35433 * 119.79869 * 180.02562 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.07998 * 120.82744 * 180.28174 * 6 5 4 39 39 H 0.97007 * 120.00334 * 0.02562 * 10 8 7 40 40 H 1.08993 * 109.47359 * 60.00620 * 13 11 10 41 41 H 1.09001 * 109.47372 * 180.02562 * 13 11 10 42 42 H 1.09003 * 109.47046 * 300.00461 * 13 11 10 43 43 H 1.09002 * 109.46984 * 184.99866 * 14 11 10 44 44 H 1.08993 * 109.46720 * 304.99444 * 14 11 10 45 45 H 1.08997 * 109.47118 * 299.99769 * 17 15 14 46 46 H 1.09001 * 109.46862 * 59.99845 * 17 15 14 47 47 H 1.09000 * 109.46966 * 179.97438 * 17 15 14 48 48 H 0.96995 * 119.99907 * 335.00625 * 18 15 14 49 49 H 0.97003 * 119.99970 * 179.97438 * 22 21 19 50 50 H 0.96696 * 113.99611 * 269.98062 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6212 -0.6592 -3.5459 7 6 2.9443 -2.0175 -3.4453 8 6 3.4413 -2.7602 -4.6191 9 8 3.7192 -3.9397 -4.5193 10 7 3.5872 -2.1312 -5.8021 11 6 4.0812 -2.8684 -6.9677 12 1 4.8157 -3.6068 -6.6460 13 6 2.9128 -3.5775 -7.6554 14 6 4.7346 -1.8930 -7.9488 15 6 5.9772 -1.2764 -7.3035 16 1 6.6455 -2.0704 -6.9701 17 6 6.7000 -0.3974 -8.3263 18 7 5.5769 -0.4604 -6.1546 19 6 6.4626 -0.2311 -5.1357 20 1 7.4565 -0.6515 -5.1794 21 6 6.0831 0.5417 -4.0469 22 7 4.8718 1.0536 -3.9934 23 14 7.2917 0.8550 -2.6574 24 1 8.4900 1.5512 -3.1910 25 1 6.6468 1.7020 -1.6220 26 1 7.6989 -0.4394 -2.0541 27 6 2.7876 -2.6597 -2.2080 28 8 3.0947 -3.9733 -2.0878 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.8914 1.0370 -2.4609 38 1 2.7294 -0.1326 -4.4825 39 1 3.3658 -1.1901 -5.8816 40 1 2.1783 -2.8393 -7.9771 41 1 3.2804 -4.1264 -8.5224 42 1 2.4474 -4.2725 -6.9564 43 1 5.0225 -2.4270 -8.8544 44 1 4.0269 -1.1037 -8.2019 45 1 6.9979 -1.0045 -9.1811 46 1 6.0318 0.3966 -8.6597 47 1 7.5851 0.0423 -7.8664 48 1 4.6844 -0.0826 -6.1155 49 1 4.6065 1.5933 -3.2323 50 1 2.3543 -4.5684 -2.2686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135625273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:17 Heat of formation + Delta-G solvation = -58.051041 kcal Electronic energy + Delta-G solvation = -31219.684450 eV Core-core repulsion = 27246.546529 eV Total energy + Delta-G solvation = -3973.137922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81869 -40.32916 -38.62183 -38.02569 -35.97781 -35.73983 -34.22644 -33.38452 -31.94872 -30.48181 -30.03523 -28.00841 -27.58703 -25.83476 -25.55832 -24.18992 -22.90517 -21.80667 -21.61289 -21.04911 -19.36079 -19.09881 -18.50878 -17.98423 -16.97772 -16.85923 -16.55107 -16.04784 -15.81879 -15.52689 -15.41256 -15.22932 -15.08984 -14.58910 -14.32652 -14.17441 -13.98888 -13.72067 -13.57298 -13.41725 -13.30711 -13.15720 -12.92700 -12.83671 -12.78894 -12.71669 -12.62174 -12.30070 -12.28645 -12.19669 -12.04729 -11.79519 -11.71020 -11.60131 -11.40416 -10.96960 -10.93242 -10.63300 -10.27854 -9.91407 -9.60925 -8.78144 -7.86151 -5.03548 -0.27383 0.33877 1.39046 1.43007 1.46706 1.98228 2.36710 2.57650 2.61454 2.89923 3.48209 3.52191 3.77429 3.83246 3.96382 4.04737 4.11980 4.18978 4.20102 4.27522 4.34206 4.40687 4.58473 4.60758 4.68926 4.71398 4.84503 4.84999 4.88666 4.93084 4.94630 5.00710 5.05998 5.10259 5.14168 5.15819 5.17657 5.33663 5.38727 5.39291 5.42724 5.43948 5.61266 5.63131 5.65031 5.79121 6.39617 6.61552 6.72633 6.94354 7.41519 7.48591 8.17177 8.46602 9.34700 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.005328 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.867854 B = 5253.821970 C = 6864.515200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 C -0.144 4.144 4 C 0.165 3.835 5 C -0.181 4.181 6 C 0.036 3.964 7 C -0.229 4.229 8 C 0.569 3.431 9 O -0.578 6.578 10 N -0.686 5.686 11 C 0.146 3.854 12 H 0.053 0.947 13 C -0.150 4.150 14 C -0.119 4.119 15 C 0.161 3.839 16 H 0.024 0.976 17 C -0.152 4.152 18 N -0.716 5.716 19 C -0.227 4.227 20 H 0.048 0.952 21 C -0.038 4.038 22 N -0.922 5.922 23 Si 0.926 3.074 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.312 1.312 27 C 0.344 3.656 28 O -0.478 6.478 29 N -0.537 5.537 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.027 0.973 48 H 0.376 0.624 49 H 0.252 0.748 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 -0.376 -3.101 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.066 4.066 3 C -0.201 4.201 4 C 0.028 3.972 5 C -0.201 4.201 6 C 0.009 3.991 7 C -0.236 4.236 8 C 0.356 3.644 9 O -0.460 6.460 10 N -0.338 5.338 11 C 0.041 3.959 12 H 0.071 0.929 13 C -0.209 4.209 14 C -0.157 4.157 15 C 0.052 3.948 16 H 0.043 0.957 17 C -0.212 4.212 18 N -0.359 5.359 19 C -0.359 4.359 20 H 0.066 0.934 21 C -0.233 4.233 22 N -0.571 5.571 23 Si 0.759 3.241 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.240 1.240 27 C 0.164 3.836 28 O -0.286 6.286 29 N -0.257 5.257 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.241 0.759 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.211 0.789 49 H 0.062 0.938 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.490 -1.486 -2.092 11.773 hybrid contribution 0.911 0.739 0.352 1.225 sum -10.578 -0.746 -1.740 10.746 Atomic orbital electron populations 1.21748 0.91386 1.02114 1.03632 1.20195 0.97793 0.95633 0.92940 1.21917 1.00223 0.94057 1.03936 1.21656 0.91467 0.87895 0.96180 1.22013 1.03327 1.02332 0.92417 1.21760 0.86374 0.90260 1.00663 1.21100 1.10443 0.97110 0.94909 1.17889 0.77251 0.86055 0.83200 1.90678 1.53067 1.17018 1.85209 1.45877 1.65196 1.13911 1.08770 1.20969 0.95938 0.93925 0.85036 0.92850 1.22097 0.97855 1.00449 1.00457 1.22130 0.96901 0.98628 0.98081 1.20496 0.94753 0.92015 0.87489 0.95748 1.22257 0.99895 1.00262 0.98805 1.42423 1.14016 1.60074 1.19394 1.19155 0.94528 1.24263 0.98001 0.93384 1.24746 0.97685 1.01910 0.98990 1.69486 1.16952 1.39258 1.31443 0.85971 0.80151 0.76305 0.81643 1.21379 1.21571 1.24034 1.19280 0.91267 0.86106 0.86980 1.84692 1.39726 1.12151 1.92062 1.67023 1.16007 1.11042 1.31613 0.89613 0.91543 0.93264 0.90185 0.90868 0.89462 0.94639 0.82217 0.83190 0.75867 0.91092 0.89559 0.94237 0.87271 0.90156 0.91355 0.93036 0.95423 0.78926 0.93785 0.72965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.18 71.98 0.66 -1.83 16 2 C -0.05 -1.16 3.22 -11.54 -0.04 -1.20 16 3 C -0.14 -3.23 8.62 71.98 0.62 -2.61 16 4 C 0.17 5.48 5.79 42.58 0.25 5.73 16 5 C -0.18 -5.94 9.15 22.32 0.20 -5.74 16 6 C 0.04 1.31 7.96 22.72 0.18 1.49 16 7 C -0.23 -9.31 5.90 -19.91 -0.12 -9.42 16 8 C 0.57 23.75 7.74 86.69 0.67 24.42 16 9 O -0.58 -26.88 14.86 16.81 0.25 -26.63 16 10 N -0.69 -24.29 3.76 -445.72 -1.67 -25.96 16 11 C 0.15 4.46 2.57 44.99 0.12 4.58 16 12 H 0.05 1.98 7.58 -2.38 -0.02 1.96 16 13 C -0.15 -3.60 9.48 71.98 0.68 -2.92 16 14 C -0.12 -3.14 4.43 30.59 0.14 -3.00 16 15 C 0.16 5.67 2.89 44.99 0.13 5.80 16 16 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 17 C -0.15 -4.78 9.49 71.99 0.68 -4.09 16 18 N -0.72 -30.92 3.84 -322.93 -1.24 -32.17 16 19 C -0.23 -11.75 9.93 84.03 0.83 -10.92 16 20 H 0.05 2.62 7.83 -2.91 -0.02 2.59 16 21 C -0.04 -2.00 5.50 84.86 0.47 -1.53 16 22 N -0.92 -45.47 10.71 21.65 0.23 -45.24 16 23 Si 0.93 45.94 29.55 68.60 2.03 47.97 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.31 -16.55 7.11 99.48 0.71 -15.84 16 27 C 0.34 14.12 7.77 85.13 0.66 14.78 16 28 O -0.48 -19.13 11.66 -66.47 -0.77 -19.90 16 29 N -0.54 -20.63 10.28 -296.05 -3.04 -23.67 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 1.50 6.47 -2.39 -0.02 1.49 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.16 4.43 6.29 -2.91 -0.02 4.41 16 38 H 0.15 5.44 5.93 -2.91 -0.02 5.42 16 39 H 0.40 13.89 4.61 -92.70 -0.43 13.47 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.38 16.07 5.70 -92.71 -0.53 15.54 16 49 H 0.25 12.42 8.31 -92.71 -0.77 11.65 16 50 H 0.41 12.27 9.06 -74.06 -0.67 11.60 16 Total: -1.00 -66.68 399.44 1.25 -65.42 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: -0.66 Total: 46.65 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.14 Total: 13.54 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.73 Total: -127.05 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.53 Total: -46.53 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -66.68 1.25 -65.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.372 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds