Wall clock time and date at job start Tue Mar 31 2020 19:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38337 * 119.45910 * 179.72734 * 5 4 2 7 7 C 1.39987 * 118.34846 * 0.53711 * 6 5 4 8 8 C 1.47522 * 120.59722 * 179.70943 * 7 6 5 9 9 O 1.21589 * 119.99874 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00101 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47631 * 34.99602 * 11 10 8 13 13 C 1.53005 * 109.47119 * 275.00139 * 11 10 8 14 14 C 1.52994 * 109.47361 * 155.00059 * 11 10 8 15 15 C 1.53006 * 109.47197 * 295.00130 * 14 11 10 16 16 H 1.09001 * 109.46507 * 305.00024 * 15 14 11 17 17 C 1.52998 * 109.47145 * 184.99896 * 15 14 11 18 18 N 1.46498 * 109.46981 * 64.99798 * 15 14 11 19 19 C 1.36943 * 119.99530 * 205.00332 * 18 15 14 20 20 H 1.07996 * 120.00064 * 0.02562 * 19 18 15 21 21 C 1.38816 * 119.99561 * 179.97438 * 19 18 15 22 22 N 1.31623 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99826 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47052 * 90.00148 * 23 21 19 25 25 H 1.48500 * 109.47385 * 210.00296 * 23 21 19 26 26 H 1.48501 * 109.47186 * 330.00498 * 23 21 19 27 27 C 1.40281 * 118.80406 * 359.72294 * 7 6 5 28 28 O 1.35429 * 119.79936 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.08003 * 120.82561 * 180.25971 * 6 5 4 39 39 H 0.97005 * 120.00020 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.46725 * 300.00207 * 13 11 10 41 41 H 1.08994 * 109.47308 * 59.99380 * 13 11 10 42 42 H 1.08997 * 109.47366 * 179.97438 * 13 11 10 43 43 H 1.09004 * 109.47006 * 55.00066 * 14 11 10 44 44 H 1.08994 * 109.47464 * 174.99946 * 14 11 10 45 45 H 1.08997 * 109.46622 * 179.97438 * 17 15 14 46 46 H 1.08997 * 109.47044 * 299.99539 * 17 15 14 47 47 H 1.09005 * 109.47258 * 60.00237 * 17 15 14 48 48 H 0.96994 * 120.00239 * 24.99626 * 18 15 14 49 49 H 0.97000 * 119.99455 * 179.97438 * 22 21 19 50 50 H 0.96698 * 113.99870 * 270.02665 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6207 -0.6593 -3.5460 7 6 2.9438 -2.0176 -3.4454 8 6 3.4394 -2.7606 -4.6196 9 8 3.7163 -3.9403 -4.5200 10 7 3.5852 -2.1317 -5.8026 11 6 4.0768 -2.8696 -6.9688 12 1 3.7030 -3.8929 -6.9354 13 6 5.6067 -2.8849 -6.9549 14 6 3.5852 -2.1887 -8.2477 15 6 2.0599 -2.2836 -8.3221 16 1 1.7566 -3.3274 -8.2413 17 6 1.5781 -1.7143 -9.6580 18 7 1.4687 -1.5167 -7.2228 19 6 0.2205 -1.8361 -6.7589 20 1 -0.3278 -2.6536 -7.2032 21 6 -0.3395 -1.1098 -5.7169 22 7 0.3290 -0.1138 -5.1751 23 14 -2.0424 -1.5450 -5.0845 24 1 -1.9246 -2.5458 -3.9938 25 1 -2.7050 -0.3219 -4.5645 26 1 -2.8516 -2.1133 -6.1924 27 6 2.7876 -2.6597 -2.2080 28 8 3.0936 -3.9735 -2.0880 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.8914 1.0370 -2.4609 38 1 2.7286 -0.1327 -4.4828 39 1 3.3646 -1.1904 -5.8820 40 1 5.9805 -1.8616 -6.9883 41 1 5.9569 -3.3700 -6.0438 42 1 5.9725 -3.4343 -7.8223 43 1 3.8840 -1.1404 -8.2390 44 1 4.0228 -2.6840 -9.1143 45 1 0.4916 -1.7824 -9.7111 46 1 1.8815 -0.6705 -9.7387 47 1 2.0180 -2.2850 -10.4760 48 1 1.9614 -0.7828 -6.8235 49 1 -0.0625 0.3940 -4.4472 50 1 2.3527 -4.5680 -2.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135625274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:21 Heat of formation + Delta-G solvation = -39.397982 kcal Electronic energy + Delta-G solvation = -31258.858427 eV Core-core repulsion = 27286.529363 eV Total energy + Delta-G solvation = -3972.329064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.36886 -38.88453 -37.19456 -36.51279 -34.75774 -34.16358 -32.65042 -31.82657 -30.50409 -29.02827 -28.51979 -27.07529 -26.36194 -24.49009 -23.76027 -22.74136 -21.58301 -20.51676 -20.21147 -19.59148 -17.89927 -17.26726 -17.06352 -16.57052 -15.58295 -15.44545 -14.85674 -14.63352 -14.22766 -14.12294 -14.05129 -13.80626 -13.63238 -13.35715 -12.93686 -12.77322 -12.66391 -12.42217 -12.21851 -12.09699 -11.97673 -11.83842 -11.76859 -11.68995 -11.32373 -11.12992 -11.08539 -11.01280 -10.89742 -10.79943 -10.72723 -10.40630 -10.31369 -9.96847 -9.77141 -9.44266 -9.27218 -8.98670 -8.80426 -8.43399 -8.19461 -7.01914 -5.92291 -3.13870 1.16868 1.78409 3.35174 3.40996 3.43626 3.49108 3.73622 4.02425 4.38566 4.50533 4.77627 4.99558 5.06312 5.25528 5.33008 5.39677 5.40780 5.42798 5.49476 5.52661 5.58728 5.67110 5.69338 5.84699 5.86865 5.90424 5.95153 5.96050 5.98701 6.05407 6.06683 6.11332 6.20244 6.30435 6.35023 6.38567 6.39680 6.52387 6.56255 6.60242 6.72617 6.80591 6.98028 7.00551 7.17963 7.61097 7.98897 8.18788 8.29176 8.36846 8.93920 9.40723 9.93389 10.29513 11.30418 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.005368 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.107933 B = 5214.509304 C = 6766.202463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C -0.146 4.146 4 C 0.166 3.834 5 C -0.181 4.181 6 C 0.036 3.964 7 C -0.207 4.207 8 C 0.577 3.423 9 O -0.547 6.547 10 N -0.695 5.695 11 C 0.151 3.849 12 H 0.083 0.917 13 C -0.163 4.163 14 C -0.134 4.134 15 C 0.169 3.831 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.715 5.715 19 C -0.219 4.219 20 H 0.067 0.933 21 C -0.010 4.010 22 N -0.927 5.927 23 Si 0.898 3.102 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.360 3.640 28 O -0.467 6.467 29 N -0.522 5.522 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.401 0.599 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.036 0.964 48 H 0.376 0.624 49 H 0.255 0.745 50 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.222 2.731 2.404 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.204 4.204 4 C 0.029 3.971 5 C -0.201 4.201 6 C 0.010 3.990 7 C -0.214 4.214 8 C 0.364 3.636 9 O -0.426 6.426 10 N -0.348 5.348 11 C 0.046 3.954 12 H 0.101 0.899 13 C -0.221 4.221 14 C -0.172 4.172 15 C 0.059 3.941 16 H 0.066 0.934 17 C -0.223 4.223 18 N -0.358 5.358 19 C -0.350 4.350 20 H 0.085 0.915 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.730 3.270 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.211 1.211 27 C 0.179 3.821 28 O -0.273 6.273 29 N -0.242 5.242 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.239 0.761 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.211 0.789 49 H 0.065 0.935 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.719 1.521 3.351 7.661 hybrid contribution -1.612 0.656 -0.557 1.827 sum 5.107 2.177 2.793 6.215 Atomic orbital electron populations 1.21800 0.93665 1.02364 1.02108 1.20042 0.96187 0.95286 0.94934 1.21921 1.01201 0.94928 1.02348 1.20968 0.92873 0.88425 0.94855 1.21743 1.03512 1.02023 0.92865 1.21715 0.87188 0.91875 0.98270 1.20979 1.09730 0.96278 0.94446 1.17674 0.76972 0.86361 0.82616 1.90712 1.51558 1.15448 1.84911 1.45853 1.66168 1.14205 1.08594 1.20787 0.92518 0.97190 0.84856 0.89872 1.22211 0.96280 1.01573 1.02039 1.22214 0.97766 1.00797 0.96460 1.20299 0.89788 0.95648 0.88365 0.93366 1.22408 1.01508 1.00297 0.98087 1.42453 1.17778 1.37685 1.37852 1.19223 0.92476 1.11574 1.11777 0.91522 1.24478 0.98225 0.98611 0.99167 1.69488 1.37405 1.22633 1.28141 0.86314 0.84821 0.77147 0.78734 1.22087 1.21819 1.21073 1.19048 0.90583 0.85814 0.86611 1.84649 1.38800 1.11893 1.91999 1.66937 1.15140 1.09707 1.32414 0.92454 0.92184 0.92024 0.89622 0.92446 0.91693 0.92143 0.84498 0.83199 0.76082 0.92870 0.92309 0.92148 0.91783 0.90749 0.92894 0.93598 0.94541 0.78902 0.93543 0.74310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.18 37.16 0.34 -1.51 16 2 C -0.05 -0.61 3.22 -91.77 -0.30 -0.90 16 3 C -0.15 -1.58 8.62 37.16 0.32 -1.26 16 4 C 0.17 2.81 5.79 -82.53 -0.48 2.34 16 5 C -0.18 -3.06 9.15 -39.50 -0.36 -3.42 16 6 C 0.04 0.67 7.96 -38.89 -0.31 0.36 16 7 C -0.21 -4.14 5.90 -104.69 -0.62 -4.76 16 8 C 0.58 11.76 7.74 -12.48 -0.10 11.66 16 9 O -0.55 -12.28 14.86 -16.48 -0.24 -12.52 16 10 N -0.70 -12.34 3.75 -54.85 -0.21 -12.54 16 11 C 0.15 2.39 2.57 -67.93 -0.17 2.22 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.10 16 13 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 14 C -0.13 -1.92 4.43 -26.73 -0.12 -2.04 16 15 C 0.17 2.98 2.89 -67.93 -0.20 2.79 16 16 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 17 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 18 N -0.71 -15.12 3.84 -53.42 -0.21 -15.33 16 19 C -0.22 -5.42 9.93 -15.06 -0.15 -5.57 16 20 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -22.49 10.71 55.49 0.59 -21.89 16 23 Si 0.90 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.36 7.24 7.77 -16.61 -0.13 7.11 16 28 O -0.47 -9.03 11.66 -39.75 -0.46 -9.50 16 29 N -0.52 -9.99 10.28 -9.21 -0.09 -10.09 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.70 6.47 -51.93 -0.34 0.36 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.14 2.04 6.29 -52.48 -0.33 1.71 16 38 H 0.15 2.75 5.93 -52.48 -0.31 2.44 16 39 H 0.40 7.03 4.61 -40.82 -0.19 6.84 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.38 8.04 5.70 -40.82 -0.23 7.80 16 49 H 0.25 6.20 8.31 -40.82 -0.34 5.86 16 50 H 0.40 6.42 9.06 45.56 0.41 6.83 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -28.68 399.44 -8.54 -37.22 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -7.26 Total: 19.82 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.66 Total: 2.52 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.09 Total: -59.85 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.71 Total: -22.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.68 -8.54 -37.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.175 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds