Wall clock time and date at job start Tue Mar 31 2020 19:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38337 * 119.45910 * 179.72734 * 5 4 2 7 7 C 1.39987 * 118.34846 * 0.53711 * 6 5 4 8 8 C 1.47522 * 120.59722 * 179.70943 * 7 6 5 9 9 O 1.21589 * 119.99874 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00101 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47631 * 34.99602 * 11 10 8 13 13 C 1.53005 * 109.47119 * 275.00139 * 11 10 8 14 14 C 1.52994 * 109.47361 * 155.00059 * 11 10 8 15 15 C 1.53006 * 109.47197 * 295.00130 * 14 11 10 16 16 H 1.09001 * 109.46507 * 305.00024 * 15 14 11 17 17 C 1.52998 * 109.47145 * 184.99896 * 15 14 11 18 18 N 1.46498 * 109.46981 * 64.99798 * 15 14 11 19 19 C 1.36943 * 119.99530 * 205.00332 * 18 15 14 20 20 H 1.07996 * 120.00064 * 0.02562 * 19 18 15 21 21 C 1.38816 * 119.99561 * 179.97438 * 19 18 15 22 22 N 1.31623 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99826 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47052 * 90.00148 * 23 21 19 25 25 H 1.48500 * 109.47385 * 210.00296 * 23 21 19 26 26 H 1.48501 * 109.47186 * 330.00498 * 23 21 19 27 27 C 1.40281 * 118.80406 * 359.72294 * 7 6 5 28 28 O 1.35429 * 119.79936 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.08003 * 120.82561 * 180.25971 * 6 5 4 39 39 H 0.97005 * 120.00020 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.46725 * 300.00207 * 13 11 10 41 41 H 1.08994 * 109.47308 * 59.99380 * 13 11 10 42 42 H 1.08997 * 109.47366 * 179.97438 * 13 11 10 43 43 H 1.09004 * 109.47006 * 55.00066 * 14 11 10 44 44 H 1.08994 * 109.47464 * 174.99946 * 14 11 10 45 45 H 1.08997 * 109.46622 * 179.97438 * 17 15 14 46 46 H 1.08997 * 109.47044 * 299.99539 * 17 15 14 47 47 H 1.09005 * 109.47258 * 60.00237 * 17 15 14 48 48 H 0.96994 * 120.00239 * 24.99626 * 18 15 14 49 49 H 0.97000 * 119.99455 * 179.97438 * 22 21 19 50 50 H 0.96698 * 113.99870 * 270.02665 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6207 -0.6593 -3.5460 7 6 2.9438 -2.0176 -3.4454 8 6 3.4394 -2.7606 -4.6196 9 8 3.7163 -3.9403 -4.5200 10 7 3.5852 -2.1317 -5.8026 11 6 4.0768 -2.8696 -6.9688 12 1 3.7030 -3.8929 -6.9354 13 6 5.6067 -2.8849 -6.9549 14 6 3.5852 -2.1887 -8.2477 15 6 2.0599 -2.2836 -8.3221 16 1 1.7566 -3.3274 -8.2413 17 6 1.5781 -1.7143 -9.6580 18 7 1.4687 -1.5167 -7.2228 19 6 0.2205 -1.8361 -6.7589 20 1 -0.3278 -2.6536 -7.2032 21 6 -0.3395 -1.1098 -5.7169 22 7 0.3290 -0.1138 -5.1751 23 14 -2.0424 -1.5450 -5.0845 24 1 -1.9246 -2.5458 -3.9938 25 1 -2.7050 -0.3219 -4.5645 26 1 -2.8516 -2.1133 -6.1924 27 6 2.7876 -2.6597 -2.2080 28 8 3.0936 -3.9735 -2.0880 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.8914 1.0370 -2.4609 38 1 2.7286 -0.1327 -4.4828 39 1 3.3646 -1.1904 -5.8820 40 1 5.9805 -1.8616 -6.9883 41 1 5.9569 -3.3700 -6.0438 42 1 5.9725 -3.4343 -7.8223 43 1 3.8840 -1.1404 -8.2390 44 1 4.0228 -2.6840 -9.1143 45 1 0.4916 -1.7824 -9.7111 46 1 1.8815 -0.6705 -9.7387 47 1 2.0180 -2.2850 -10.4760 48 1 1.9614 -0.7828 -6.8235 49 1 -0.0625 0.3940 -4.4472 50 1 2.3527 -4.5680 -2.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135625274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:20 Heat of formation + Delta-G solvation = -57.655607 kcal Electronic energy + Delta-G solvation = -31259.650137 eV Core-core repulsion = 27286.529363 eV Total energy + Delta-G solvation = -3973.120774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81822 -40.33067 -38.60855 -38.01483 -35.97693 -35.73321 -34.21972 -33.38060 -31.94908 -30.48285 -30.03265 -28.02045 -27.58740 -25.84140 -25.54416 -24.18681 -22.90851 -21.81019 -21.60554 -21.04407 -19.34507 -19.07856 -18.51227 -17.98109 -17.03835 -16.79630 -16.55375 -16.03431 -15.72857 -15.60874 -15.32830 -15.23627 -15.19116 -14.57516 -14.34295 -14.18599 -13.99036 -13.73142 -13.57197 -13.39420 -13.30503 -13.16002 -12.92792 -12.84527 -12.79420 -12.72335 -12.59621 -12.32140 -12.27653 -12.15506 -12.04653 -11.80839 -11.70740 -11.58435 -11.39657 -10.97513 -10.91632 -10.63680 -10.27873 -9.92056 -9.61559 -8.76889 -7.83730 -5.01904 -0.28317 0.33131 1.40907 1.47076 1.48756 1.99111 2.32660 2.59432 2.60496 2.95168 3.49952 3.51831 3.77131 3.83331 3.95729 4.05511 4.11307 4.19231 4.21998 4.26842 4.30731 4.40244 4.57319 4.58600 4.68693 4.70909 4.82039 4.84865 4.88908 4.92844 4.94442 4.98619 5.04764 5.10161 5.13307 5.16023 5.17898 5.33276 5.35839 5.37934 5.43566 5.46013 5.61561 5.63230 5.65442 5.78845 6.41204 6.55481 6.71146 6.93058 7.41071 7.50103 8.18805 8.48170 9.37160 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.005368 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.107933 B = 5214.509304 C = 6766.202463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.141 4.141 4 C 0.165 3.835 5 C -0.180 4.180 6 C 0.035 3.965 7 C -0.227 4.227 8 C 0.569 3.431 9 O -0.578 6.578 10 N -0.686 5.686 11 C 0.147 3.853 12 H 0.056 0.944 13 C -0.152 4.152 14 C -0.119 4.119 15 C 0.162 3.838 16 H 0.027 0.973 17 C -0.153 4.153 18 N -0.717 5.717 19 C -0.226 4.226 20 H 0.050 0.950 21 C -0.039 4.039 22 N -0.923 5.923 23 Si 0.929 3.071 24 H -0.311 1.311 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.341 3.659 28 O -0.477 6.477 29 N -0.536 5.536 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.403 0.597 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.027 0.973 46 H 0.049 0.951 47 H 0.067 0.933 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 4.571 1.925 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.199 4.199 4 C 0.027 3.973 5 C -0.200 4.200 6 C 0.009 3.991 7 C -0.234 4.234 8 C 0.356 3.644 9 O -0.460 6.460 10 N -0.337 5.337 11 C 0.042 3.958 12 H 0.075 0.925 13 C -0.210 4.210 14 C -0.158 4.158 15 C 0.054 3.946 16 H 0.045 0.955 17 C -0.213 4.213 18 N -0.360 5.360 19 C -0.358 4.358 20 H 0.068 0.932 21 C -0.234 4.234 22 N -0.573 5.573 23 Si 0.763 3.237 24 H -0.240 1.240 25 H -0.218 1.218 26 H -0.214 1.214 27 C 0.161 3.839 28 O -0.285 6.285 29 N -0.256 5.256 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.241 0.759 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.210 0.790 49 H 0.062 0.938 50 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 7.620 3.373 2.831 8.801 hybrid contribution -1.904 0.056 -0.389 1.944 sum 5.716 3.429 2.443 7.099 Atomic orbital electron populations 1.21793 0.93265 1.01393 1.03192 1.20188 0.96342 0.96638 0.93161 1.21907 1.01335 0.92949 1.03690 1.21675 0.91412 0.87812 0.96401 1.22023 1.02575 1.03062 0.92298 1.21764 0.87169 0.91285 0.98876 1.21093 1.10789 0.97082 0.94441 1.17880 0.76886 0.86146 0.83475 1.90679 1.53178 1.16620 1.85480 1.45876 1.65212 1.14209 1.08445 1.20958 0.94228 0.95765 0.84808 0.92525 1.22113 0.94002 1.02793 1.02138 1.22131 0.94960 1.01923 0.96737 1.20482 0.92075 0.94060 0.88030 0.95470 1.22258 1.00018 1.00947 0.98035 1.42450 1.16745 1.37968 1.38795 1.19209 0.93827 1.10980 1.11798 0.93197 1.24765 0.99358 0.99380 0.99870 1.69515 1.37233 1.22489 1.28052 0.85838 0.83940 0.76315 0.77648 1.23962 1.21791 1.21401 1.19271 0.91330 0.86096 0.87160 1.84601 1.39669 1.12146 1.92055 1.67026 1.15584 1.10803 1.32184 0.94458 0.89129 0.92890 0.89331 0.92256 0.91492 0.89677 0.82194 0.83181 0.75860 0.91226 0.94584 0.89451 0.90321 0.87308 0.95336 0.93154 0.91421 0.78998 0.93836 0.73298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.18 71.98 0.66 -2.72 16 2 C -0.04 -1.10 3.22 -11.54 -0.04 -1.14 16 3 C -0.14 -2.64 8.62 71.98 0.62 -2.02 16 4 C 0.16 5.45 5.79 42.58 0.25 5.70 16 5 C -0.18 -5.91 9.15 22.32 0.20 -5.70 16 6 C 0.04 1.30 7.96 22.72 0.18 1.48 16 7 C -0.23 -9.27 5.90 -19.91 -0.12 -9.38 16 8 C 0.57 23.77 7.74 86.69 0.67 24.44 16 9 O -0.58 -26.88 14.86 16.82 0.25 -26.63 16 10 N -0.69 -24.28 3.75 -445.72 -1.67 -25.96 16 11 C 0.15 4.49 2.57 44.99 0.12 4.60 16 12 H 0.06 2.05 7.58 -2.39 -0.02 2.04 16 13 C -0.15 -3.80 9.48 71.98 0.68 -3.12 16 14 C -0.12 -3.11 4.43 30.59 0.14 -2.97 16 15 C 0.16 5.55 2.89 44.99 0.13 5.68 16 16 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 17 C -0.15 -4.69 9.49 71.98 0.68 -4.00 16 18 N -0.72 -30.07 3.84 -322.93 -1.24 -31.31 16 19 C -0.23 -11.25 9.93 84.03 0.83 -10.42 16 20 H 0.05 2.62 7.83 -2.91 -0.02 2.59 16 21 C -0.04 -1.95 5.50 84.86 0.47 -1.49 16 22 N -0.92 -44.33 10.71 21.65 0.23 -44.10 16 23 Si 0.93 44.07 29.55 68.60 2.03 46.10 16 24 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 C 0.34 14.09 7.77 85.13 0.66 14.76 16 28 O -0.48 -19.20 11.66 -66.43 -0.77 -19.98 16 29 N -0.54 -20.68 10.28 -296.06 -3.04 -23.72 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.23 6.47 -2.39 -0.02 1.22 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.16 4.44 6.29 -2.91 -0.02 4.42 16 38 H 0.15 5.45 5.93 -2.91 -0.02 5.43 16 39 H 0.40 13.90 4.61 -92.70 -0.43 13.47 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.38 15.74 5.70 -92.71 -0.53 15.22 16 49 H 0.25 12.06 8.31 -92.71 -0.77 11.29 16 50 H 0.41 13.93 9.06 -74.06 -0.67 13.26 16 Total: -1.00 -63.23 399.44 1.25 -61.97 By element: Atomic # 1 Polarization: 50.59 SS G_CDS: -0.66 Total: 49.93 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.14 Total: 13.70 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -5.73 Total: -125.10 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -0.52 Total: -46.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -63.23 1.25 -61.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.319 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds