Wall clock time and date at job start Tue Mar 31 2020 19:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38337 * 119.45910 * 179.72734 * 5 4 2 7 7 C 1.39983 * 118.34929 * 0.53292 * 6 5 4 8 8 C 1.47526 * 120.60018 * 179.75046 * 7 6 5 9 9 O 1.21587 * 120.00061 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99887 * 359.97438 * 8 7 6 11 11 C 1.46498 * 120.00435 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46946 * 325.00079 * 11 10 8 13 13 C 1.52999 * 109.47304 * 84.99691 * 11 10 8 14 14 C 1.52997 * 109.47378 * 205.00256 * 11 10 8 15 15 C 1.53000 * 109.47511 * 64.99630 * 14 11 10 16 16 H 1.09000 * 109.46599 * 305.00214 * 15 14 11 17 17 C 1.52997 * 109.46997 * 185.00238 * 15 14 11 18 18 N 1.46492 * 109.46919 * 64.99893 * 15 14 11 19 19 C 1.36943 * 120.00217 * 205.00085 * 18 15 14 20 20 H 1.07999 * 119.99292 * 0.02562 * 19 18 15 21 21 C 1.38806 * 120.00101 * 180.02562 * 19 18 15 22 22 N 1.31612 * 120.00371 * 359.97438 * 21 19 18 23 23 Si 1.86811 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47063 * 59.99884 * 23 21 19 25 25 H 1.48497 * 109.46950 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47057 * 300.00017 * 23 21 19 27 27 C 1.40284 * 118.80423 * 359.73117 * 7 6 5 28 28 O 1.35429 * 119.80033 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.08001 * 120.82840 * 180.24049 * 6 5 4 39 39 H 0.97007 * 120.00170 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.47115 * 300.00608 * 13 11 10 41 41 H 1.08991 * 109.47409 * 60.00097 * 13 11 10 42 42 H 1.08996 * 109.47255 * 180.02562 * 13 11 10 43 43 H 1.09003 * 109.46933 * 185.00210 * 14 11 10 44 44 H 1.08999 * 109.46803 * 304.99422 * 14 11 10 45 45 H 1.08997 * 109.47533 * 59.99880 * 17 15 14 46 46 H 1.09005 * 109.46776 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47019 * 299.99821 * 17 15 14 48 48 H 0.97004 * 120.00593 * 25.00612 * 18 15 14 49 49 H 0.97006 * 120.00136 * 180.02562 * 22 21 19 50 50 H 0.96698 * 113.99870 * 270.02240 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6207 -0.6593 -3.5460 7 6 2.9439 -2.0176 -3.4454 8 6 3.4403 -2.7604 -4.6194 9 8 3.7182 -3.9398 -4.5196 10 7 3.5858 -2.1315 -5.8025 11 6 4.0794 -2.8689 -6.9682 12 1 4.8140 -3.6072 -6.6468 13 6 2.9107 -3.5781 -7.6554 14 6 4.7323 -1.8936 -7.9497 15 6 5.9752 -1.2767 -7.3050 16 1 5.7020 -0.8190 -6.3543 17 6 6.5568 -0.2109 -8.2359 18 7 6.9753 -2.3220 -7.0742 19 6 7.9159 -2.1647 -6.0914 20 1 7.9200 -1.2702 -5.4862 21 6 8.8638 -3.1549 -5.8731 22 7 8.8584 -4.2452 -6.6103 23 14 10.1473 -2.9400 -4.5328 24 1 9.4711 -2.7946 -3.2187 25 1 11.0357 -4.1295 -4.5029 26 1 10.9548 -1.7253 -4.8111 27 6 2.7876 -2.6597 -2.2080 28 8 3.0937 -3.9735 -2.0880 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.8914 1.0370 -2.4609 38 1 2.7283 -0.1328 -4.4828 39 1 3.3638 -1.1906 -5.8822 40 1 2.4455 -4.2729 -6.9561 41 1 2.1760 -2.8399 -7.9768 42 1 3.2780 -4.1271 -8.5224 43 1 5.0198 -2.4276 -8.8554 44 1 4.0244 -1.1042 -8.2025 45 1 5.8127 0.5668 -8.4076 46 1 7.4426 0.2283 -7.7768 47 1 6.8299 -0.6687 -9.1866 48 1 6.9714 -3.1255 -7.6176 49 1 9.5207 -4.9373 -6.4574 50 1 2.3528 -4.5680 -2.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135625275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:24 Heat of formation + Delta-G solvation = -44.595813 kcal Electronic energy + Delta-G solvation = -29768.714145 eV Core-core repulsion = 25796.159686 eV Total energy + Delta-G solvation = -3972.554459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99880 -39.22361 -37.60051 -36.65474 -35.30321 -34.40512 -32.96202 -32.00855 -30.71740 -29.50182 -28.55796 -27.52032 -26.32711 -25.06495 -23.58697 -23.42562 -21.89435 -20.96660 -20.24990 -19.70242 -18.47295 -17.72810 -17.15798 -17.06782 -16.02222 -15.64231 -15.20985 -14.75347 -14.71675 -14.62800 -14.12069 -13.96553 -13.87016 -13.61867 -13.43922 -13.08859 -12.92966 -12.76893 -12.62181 -12.35933 -12.13865 -11.99203 -11.82649 -11.72440 -11.66353 -11.57310 -11.48749 -11.19050 -11.01602 -10.77215 -10.58653 -10.41845 -10.21243 -10.06108 -9.93213 -9.88074 -9.57107 -9.33912 -8.96500 -8.82691 -8.67076 -6.87570 -5.67960 -2.95948 0.50568 0.96153 2.95733 3.28094 3.45402 3.50326 3.55559 3.56118 3.75832 4.19478 4.38575 4.64300 4.67427 4.71609 4.77792 4.86233 4.91337 5.12967 5.23186 5.30243 5.32712 5.41798 5.45752 5.48806 5.52077 5.60750 5.65859 5.67028 5.70161 5.83290 5.88721 5.89565 5.94454 5.97709 6.02056 6.13870 6.25043 6.29663 6.35950 6.45177 6.57822 6.72664 6.81534 6.93495 7.08818 7.49929 7.73146 7.76595 7.80453 8.50320 8.52649 9.61865 10.18542 10.52561 11.54708 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.003439 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.840007 B = 8139.977350 C = 8979.571195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C -0.149 4.149 4 C 0.179 3.821 5 C -0.191 4.191 6 C -0.027 4.027 7 C -0.201 4.201 8 C 0.561 3.439 9 O -0.510 6.510 10 N -0.712 5.712 11 C 0.144 3.856 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.044 0.956 17 C -0.165 4.165 18 N -0.719 5.719 19 C -0.236 4.236 20 H 0.065 0.935 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.374 3.626 28 O -0.455 6.455 29 N -0.508 5.508 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.390 0.610 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.052 0.948 47 H 0.046 0.954 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.455 11.503 5.986 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.040 3.960 5 C -0.211 4.211 6 C -0.053 4.053 7 C -0.208 4.208 8 C 0.346 3.654 9 O -0.386 6.386 10 N -0.364 5.364 11 C 0.041 3.959 12 H 0.125 0.875 13 C -0.218 4.218 14 C -0.170 4.170 15 C 0.062 3.938 16 H 0.062 0.938 17 C -0.226 4.226 18 N -0.361 5.361 19 C -0.367 4.367 20 H 0.083 0.917 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.194 3.806 28 O -0.262 6.262 29 N -0.227 5.227 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.225 0.775 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -20.636 10.330 7.072 24.136 hybrid contribution 0.530 0.539 -0.419 0.865 sum -20.105 10.869 6.652 23.804 Atomic orbital electron populations 1.21799 0.93293 1.02445 1.02278 1.20148 0.96361 0.95576 0.94912 1.21945 1.01740 0.94477 1.02466 1.21150 0.91664 0.88343 0.94856 1.21882 1.04132 1.01971 0.93108 1.21718 0.92052 0.92371 0.99176 1.21258 1.08029 0.95926 0.95557 1.17699 0.78432 0.86976 0.82244 1.90840 1.48460 1.15230 1.84036 1.45855 1.67305 1.13462 1.09741 1.21055 0.95535 0.94909 0.84434 0.87471 1.22179 0.98526 1.00379 1.00765 1.22175 0.97818 0.98416 0.98556 1.20210 0.88221 0.89975 0.95435 0.93797 1.22463 1.00416 0.98958 1.00724 1.42371 1.33165 1.19409 1.41169 1.19088 1.06059 1.02171 1.09377 0.91656 1.24676 0.99667 0.96718 0.99551 1.69629 1.37763 1.08634 1.41923 0.86346 0.81571 0.76690 0.82080 1.21334 1.21671 1.21426 1.19157 0.88957 0.86493 0.86029 1.84785 1.38448 1.11243 1.91748 1.67093 1.13883 1.09750 1.31970 0.92342 0.92237 0.91678 0.88894 0.91948 0.91626 0.92051 0.83783 0.84005 0.77531 0.92544 0.93195 0.91643 0.90509 0.92111 0.94774 0.92915 0.93507 0.78333 0.93545 0.73795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 2 C -0.05 -0.41 3.22 -91.77 -0.30 -0.71 16 3 C -0.15 -0.94 8.62 37.16 0.32 -0.62 16 4 C 0.18 1.97 5.79 -82.53 -0.48 1.50 16 5 C -0.19 -1.81 9.15 -39.50 -0.36 -2.17 16 6 C -0.03 -0.29 9.64 -38.89 -0.37 -0.67 16 7 C -0.20 -2.93 5.90 -104.69 -0.62 -3.55 16 8 C 0.56 9.63 7.74 -12.47 -0.10 9.53 16 9 O -0.51 -10.85 14.86 -16.48 -0.24 -11.09 16 10 N -0.71 -10.42 4.40 -54.85 -0.24 -10.66 16 11 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 12 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 13 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 14 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16 15 C 0.17 3.25 2.84 -67.94 -0.19 3.05 16 16 H 0.04 0.85 7.56 -51.93 -0.39 0.46 16 17 C -0.17 -2.87 9.49 37.16 0.35 -2.52 16 18 N -0.72 -17.84 4.49 -53.43 -0.24 -18.08 16 19 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.30 5.50 -17.44 -0.10 -0.39 16 22 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 23 Si 0.90 23.54 29.55 -169.99 -5.02 18.52 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.37 5.79 7.77 -16.61 -0.13 5.66 16 28 O -0.46 -7.39 11.66 -39.75 -0.46 -7.86 16 29 N -0.51 -7.17 10.28 -9.21 -0.09 -7.27 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.32 6.47 -51.93 -0.34 -0.02 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.14 0.91 6.29 -52.48 -0.33 0.58 16 38 H 0.14 1.10 6.52 -52.49 -0.34 0.76 16 39 H 0.39 4.43 6.70 -40.82 -0.27 4.15 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 49 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.40 4.60 9.06 45.56 0.41 5.02 16 LS Contribution 408.25 15.07 6.15 6.15 Total: -1.00 -36.46 408.25 -8.55 -45.01 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.41 Total: 13.50 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.71 Total: 0.00 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.15 Total: -64.23 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.71 Total: -18.95 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.46 -8.55 -45.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.415 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds