Wall clock time and date at job start Tue Mar 31 2020 19:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38337 * 119.45910 * 179.72734 * 5 4 2 7 7 C 1.39983 * 118.34929 * 0.53292 * 6 5 4 8 8 C 1.47526 * 120.60018 * 179.75046 * 7 6 5 9 9 O 1.21587 * 120.00061 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99887 * 359.97438 * 8 7 6 11 11 C 1.46498 * 120.00435 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.46946 * 325.00079 * 11 10 8 13 13 C 1.52999 * 109.47304 * 84.99691 * 11 10 8 14 14 C 1.52997 * 109.47378 * 205.00256 * 11 10 8 15 15 C 1.53000 * 109.47511 * 64.99630 * 14 11 10 16 16 H 1.09000 * 109.46599 * 305.00214 * 15 14 11 17 17 C 1.52997 * 109.46997 * 185.00238 * 15 14 11 18 18 N 1.46492 * 109.46919 * 64.99893 * 15 14 11 19 19 C 1.36943 * 120.00217 * 205.00085 * 18 15 14 20 20 H 1.07999 * 119.99292 * 0.02562 * 19 18 15 21 21 C 1.38806 * 120.00101 * 180.02562 * 19 18 15 22 22 N 1.31612 * 120.00371 * 359.97438 * 21 19 18 23 23 Si 1.86811 * 119.99778 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47063 * 59.99884 * 23 21 19 25 25 H 1.48497 * 109.46950 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47057 * 300.00017 * 23 21 19 27 27 C 1.40284 * 118.80423 * 359.73117 * 7 6 5 28 28 O 1.35429 * 119.80033 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.08001 * 120.82840 * 180.24049 * 6 5 4 39 39 H 0.97007 * 120.00170 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.47115 * 300.00608 * 13 11 10 41 41 H 1.08991 * 109.47409 * 60.00097 * 13 11 10 42 42 H 1.08996 * 109.47255 * 180.02562 * 13 11 10 43 43 H 1.09003 * 109.46933 * 185.00210 * 14 11 10 44 44 H 1.08999 * 109.46803 * 304.99422 * 14 11 10 45 45 H 1.08997 * 109.47533 * 59.99880 * 17 15 14 46 46 H 1.09005 * 109.46776 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47019 * 299.99821 * 17 15 14 48 48 H 0.97004 * 120.00593 * 25.00612 * 18 15 14 49 49 H 0.97006 * 120.00136 * 180.02562 * 22 21 19 50 50 H 0.96698 * 113.99870 * 270.02240 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6207 -0.6593 -3.5460 7 6 2.9439 -2.0176 -3.4454 8 6 3.4403 -2.7604 -4.6194 9 8 3.7182 -3.9398 -4.5196 10 7 3.5858 -2.1315 -5.8025 11 6 4.0794 -2.8689 -6.9682 12 1 4.8140 -3.6072 -6.6468 13 6 2.9107 -3.5781 -7.6554 14 6 4.7323 -1.8936 -7.9497 15 6 5.9752 -1.2767 -7.3050 16 1 5.7020 -0.8190 -6.3543 17 6 6.5568 -0.2109 -8.2359 18 7 6.9753 -2.3220 -7.0742 19 6 7.9159 -2.1647 -6.0914 20 1 7.9200 -1.2702 -5.4862 21 6 8.8638 -3.1549 -5.8731 22 7 8.8584 -4.2452 -6.6103 23 14 10.1473 -2.9400 -4.5328 24 1 9.4711 -2.7946 -3.2187 25 1 11.0357 -4.1295 -4.5029 26 1 10.9548 -1.7253 -4.8111 27 6 2.7876 -2.6597 -2.2080 28 8 3.0937 -3.9735 -2.0880 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.8914 1.0370 -2.4609 38 1 2.7283 -0.1328 -4.4828 39 1 3.3638 -1.1906 -5.8822 40 1 2.4455 -4.2729 -6.9561 41 1 2.1760 -2.8399 -7.9768 42 1 3.2780 -4.1271 -8.5224 43 1 5.0198 -2.4276 -8.8554 44 1 4.0244 -1.1042 -8.2025 45 1 5.8127 0.5668 -8.4076 46 1 7.4426 0.2283 -7.7768 47 1 6.8299 -0.6687 -9.1866 48 1 6.9714 -3.1255 -7.6176 49 1 9.5207 -4.9373 -6.4574 50 1 2.3528 -4.5680 -2.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135625275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:23 Heat of formation + Delta-G solvation = -72.471505 kcal Electronic energy + Delta-G solvation = -29769.922925 eV Core-core repulsion = 25796.159686 eV Total energy + Delta-G solvation = -3973.763240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01580 -40.44499 -38.69157 -38.11341 -36.15001 -35.95837 -34.20543 -33.68006 -31.94520 -30.60267 -30.29150 -28.00552 -27.58851 -26.01816 -25.64207 -24.39550 -22.98575 -22.02455 -21.43403 -21.15660 -19.57722 -19.29348 -18.67866 -18.14529 -17.00860 -16.99316 -16.59168 -16.12296 -15.91193 -15.63271 -15.58594 -15.26660 -15.15295 -14.72754 -14.48491 -14.26691 -14.18121 -13.89833 -13.60755 -13.47582 -13.34533 -13.16626 -12.93997 -12.84999 -12.81752 -12.78612 -12.66581 -12.37516 -12.27390 -12.22512 -12.05625 -11.82236 -11.81457 -11.56589 -11.41709 -11.11137 -11.00998 -10.91756 -10.43409 -10.08402 -9.80686 -8.94978 -7.93514 -5.18111 -0.48630 0.06224 1.38940 1.43635 1.47703 1.83142 2.13823 2.45200 2.54413 2.70897 3.36520 3.41100 3.61595 3.68629 3.84491 3.92450 4.02349 4.10367 4.12791 4.17685 4.26343 4.41897 4.44020 4.55400 4.61368 4.69657 4.78739 4.80442 4.83320 4.85254 4.88174 4.95628 4.97418 5.04076 5.05421 5.11851 5.21903 5.24398 5.35416 5.37613 5.43121 5.43256 5.46594 5.50085 5.63700 5.66497 6.30243 6.48578 6.60961 6.81648 7.30733 7.35934 8.17455 8.35729 9.30156 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.003439 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.840007 B = 8139.977350 C = 8979.571195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C -0.145 4.145 4 C 0.172 3.828 5 C -0.176 4.176 6 C -0.017 4.017 7 C -0.224 4.224 8 C 0.555 3.445 9 O -0.567 6.567 10 N -0.696 5.696 11 C 0.147 3.853 12 H 0.044 0.956 13 C -0.150 4.150 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.042 0.958 17 C -0.156 4.156 18 N -0.731 5.731 19 C -0.225 4.225 20 H 0.068 0.932 21 C -0.078 4.078 22 N -0.968 5.968 23 Si 0.958 3.042 24 H -0.291 1.291 25 H -0.296 1.296 26 H -0.272 1.272 27 C 0.347 3.653 28 O -0.484 6.484 29 N -0.533 5.533 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.410 0.590 40 H 0.036 0.964 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.041 0.959 48 H 0.370 0.630 49 H 0.247 0.753 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.726 16.035 5.412 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.203 4.203 4 C 0.033 3.967 5 C -0.196 4.196 6 C -0.043 4.043 7 C -0.231 4.231 8 C 0.342 3.658 9 O -0.447 6.447 10 N -0.349 5.349 11 C 0.042 3.958 12 H 0.063 0.937 13 C -0.208 4.208 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.060 0.940 17 C -0.215 4.215 18 N -0.372 5.372 19 C -0.358 4.358 20 H 0.086 0.914 21 C -0.270 4.270 22 N -0.619 5.619 23 Si 0.789 3.211 24 H -0.219 1.219 25 H -0.222 1.222 26 H -0.198 1.198 27 C 0.168 3.832 28 O -0.293 6.293 29 N -0.253 5.253 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.205 0.795 38 H 0.196 0.804 39 H 0.248 0.752 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.130 0.870 45 H 0.098 0.902 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.201 0.799 49 H 0.056 0.944 50 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -22.947 14.961 6.477 28.149 hybrid contribution 1.109 -0.746 -0.182 1.349 sum -21.839 14.215 6.296 26.807 Atomic orbital electron populations 1.21783 0.91774 1.01912 1.03885 1.20270 0.97489 0.96384 0.92903 1.21953 1.00975 0.93030 1.04324 1.21875 0.90426 0.87518 0.96854 1.22332 1.02025 1.03589 0.91612 1.22123 0.90428 0.90547 1.01171 1.21133 1.10210 0.97660 0.94098 1.18184 0.77662 0.86562 0.83393 1.90806 1.51105 1.17775 1.84977 1.45684 1.66226 1.14261 1.08724 1.20862 0.95416 0.94377 0.85112 0.93745 1.22072 0.97960 1.00693 1.00076 1.22092 0.96735 0.99239 0.97510 1.20544 0.88498 0.89207 0.96284 0.94012 1.22304 1.00595 0.99198 0.99447 1.42591 1.33872 1.20484 1.40210 1.19448 1.05786 1.01444 1.09112 0.91388 1.25403 1.02328 0.97075 1.02169 1.69779 1.38721 1.09510 1.43932 0.85428 0.79496 0.76831 0.79386 1.21858 1.22219 1.19776 1.19402 0.90464 0.86240 0.87083 1.84720 1.39955 1.12590 1.92004 1.67107 1.14888 1.11484 1.31783 0.90907 0.93876 0.89889 0.90445 0.89905 0.90030 0.93245 0.79468 0.80415 0.75194 0.94467 0.89622 0.91183 0.90465 0.87038 0.90152 0.95328 0.93954 0.79860 0.94394 0.72577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 2 C -0.05 -0.73 3.22 -11.54 -0.04 -0.76 16 3 C -0.15 -1.31 8.62 71.98 0.62 -0.69 16 4 C 0.17 3.51 5.79 42.58 0.25 3.76 16 5 C -0.18 -2.70 9.15 22.32 0.20 -2.49 16 6 C -0.02 -0.32 9.64 22.72 0.22 -0.10 16 7 C -0.22 -6.53 5.90 -19.91 -0.12 -6.65 16 8 C 0.56 19.54 7.74 86.69 0.67 20.21 16 9 O -0.57 -25.92 14.86 16.82 0.25 -25.68 16 10 N -0.70 -19.54 4.40 -445.72 -1.96 -21.50 16 11 C 0.15 4.64 2.52 44.99 0.11 4.76 16 12 H 0.04 2.01 7.05 -2.39 -0.02 1.99 16 13 C -0.15 -3.83 9.48 71.98 0.68 -3.15 16 14 C -0.12 -3.20 4.29 30.59 0.13 -3.07 16 15 C 0.16 5.85 2.84 44.99 0.13 5.98 16 16 H 0.04 1.53 7.56 -2.39 -0.02 1.51 16 17 C -0.16 -4.93 9.49 71.98 0.68 -4.25 16 18 N -0.73 -36.74 4.49 -322.96 -1.45 -38.19 16 19 C -0.23 -12.96 9.93 84.03 0.83 -12.13 16 20 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 22 N -0.97 -62.51 13.06 21.65 0.28 -62.22 16 23 Si 0.96 49.63 29.55 68.60 2.03 51.65 16 24 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 25 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 26 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 27 C 0.35 11.27 7.77 85.13 0.66 11.93 16 28 O -0.48 -17.24 11.66 -66.43 -0.77 -18.02 16 29 N -0.53 -15.33 10.28 -296.05 -3.04 -18.37 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 0.41 6.47 -2.39 -0.02 0.39 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.19 1.22 6.29 -2.91 -0.02 1.20 16 38 H 0.18 1.86 6.52 -2.91 -0.02 1.84 16 39 H 0.41 7.85 6.70 -92.70 -0.62 7.23 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.37 20.33 7.80 -92.71 -0.72 19.60 16 49 H 0.25 15.67 8.31 -92.70 -0.77 14.90 16 50 H 0.41 11.00 9.06 -74.06 -0.67 10.33 16 Total: -1.00 -86.70 408.25 0.45 -86.25 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -1.05 Total: 37.73 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 6.17 Total: 8.35 kcal Atomic # 7 Polarization: -134.11 SS G_CDS: -6.17 Total: -140.28 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.52 Total: -43.69 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.65 kcal Total: -86.70 0.45 -86.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.777 kcal (2) G-P(sol) polarization free energy of solvation -86.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds