Wall clock time and date at job start Tue Mar 31 2020 19:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38356 * 119.40724 * 84.72730 * 4 2 1 6 6 C 1.38337 * 119.45910 * 179.72734 * 5 4 2 7 7 C 1.39987 * 118.34846 * 0.53711 * 6 5 4 8 8 C 1.47522 * 120.59722 * 179.70943 * 7 6 5 9 9 O 1.21589 * 119.99874 * 180.02562 * 8 7 6 10 10 N 1.34775 * 120.00101 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47631 * 34.99602 * 11 10 8 13 13 C 1.53005 * 109.47119 * 275.00139 * 11 10 8 14 14 C 1.52994 * 109.47361 * 155.00059 * 11 10 8 15 15 C 1.53006 * 109.47197 * 295.00130 * 14 11 10 16 16 H 1.08996 * 109.46980 * 54.99342 * 15 14 11 17 17 C 1.52991 * 109.47433 * 174.99931 * 15 14 11 18 18 N 1.46502 * 109.46521 * 295.00043 * 15 14 11 19 19 C 1.36940 * 119.99918 * 155.00208 * 18 15 14 20 20 H 1.07999 * 119.99609 * 359.97438 * 19 18 15 21 21 C 1.38813 * 120.00040 * 179.97438 * 19 18 15 22 22 N 1.31617 * 119.99573 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46841 * 90.00318 * 23 21 19 25 25 H 1.48501 * 109.46766 * 209.99959 * 23 21 19 26 26 H 1.48497 * 109.47557 * 330.00577 * 23 21 19 27 27 C 1.40281 * 118.80406 * 359.72294 * 7 6 5 28 28 O 1.35429 * 119.79936 * 179.97438 * 27 7 6 29 29 N 1.31879 * 119.40779 * 264.99839 * 4 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 37 37 H 1.08004 * 120.26875 * 359.97438 * 5 4 2 38 38 H 1.08003 * 120.82561 * 180.25971 * 6 5 4 39 39 H 0.97005 * 120.00020 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47366 * 179.97438 * 13 11 10 41 41 H 1.09004 * 109.46725 * 300.00207 * 13 11 10 42 42 H 1.08994 * 109.47308 * 59.99380 * 13 11 10 43 43 H 1.09004 * 109.47006 * 55.00066 * 14 11 10 44 44 H 1.08994 * 109.47464 * 174.99946 * 14 11 10 45 45 H 1.09001 * 109.47197 * 300.00104 * 17 15 14 46 46 H 1.09005 * 109.47317 * 59.99791 * 17 15 14 47 47 H 1.09001 * 109.47351 * 179.97438 * 17 15 14 48 48 H 0.96999 * 120.00216 * 334.99567 * 18 15 14 49 49 H 0.97002 * 119.99739 * 179.97438 * 22 21 19 50 50 H 0.96698 * 113.99870 * 270.02665 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1543 -0.0097 -2.4172 6 6 2.6207 -0.6593 -3.5460 7 6 2.9438 -2.0176 -3.4454 8 6 3.4394 -2.7606 -4.6196 9 8 3.7163 -3.9403 -4.5200 10 7 3.5852 -2.1317 -5.8026 11 6 4.0768 -2.8696 -6.9688 12 1 3.7030 -3.8929 -6.9354 13 6 5.6067 -2.8849 -6.9549 14 6 3.5852 -2.1887 -8.2477 15 6 2.0599 -2.2836 -8.3221 16 1 1.6252 -1.8674 -7.4133 17 6 1.5584 -1.4963 -9.5343 18 7 1.6640 -3.6879 -8.4540 19 6 0.4234 -4.0915 -8.0378 20 1 -0.2630 -3.3746 -7.6121 21 6 0.0480 -5.4220 -8.1632 22 7 -1.1446 -5.8097 -7.7637 23 14 1.2350 -6.6618 -8.9003 24 1 2.0640 -7.2556 -7.8208 25 1 0.4689 -7.7350 -9.5833 26 1 2.1159 -5.9804 -9.8826 27 6 2.7876 -2.6597 -2.2080 28 8 3.0936 -3.9735 -2.0880 29 7 2.3426 -1.9901 -1.1581 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.8914 1.0370 -2.4609 38 1 2.7286 -0.1327 -4.4828 39 1 3.3646 -1.1904 -5.8820 40 1 5.9725 -3.4343 -7.8223 41 1 5.9805 -1.8616 -6.9883 42 1 5.9569 -3.3700 -6.0438 43 1 3.8840 -1.1404 -8.2390 44 1 4.0228 -2.6840 -9.1143 45 1 1.8531 -0.4515 -9.4362 46 1 1.9932 -1.9126 -10.4431 47 1 0.4719 -1.5643 -9.5876 48 1 2.2806 -4.3318 -8.8361 49 1 -1.4071 -6.7394 -7.8517 50 1 2.3527 -4.5680 -2.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135625276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:26 Heat of formation + Delta-G solvation = -70.029771 kcal Electronic energy + Delta-G solvation = -29837.587577 eV Core-core repulsion = 25863.930219 eV Total energy + Delta-G solvation = -3973.657358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.01921 -40.47272 -38.70863 -38.19282 -36.18511 -35.99617 -34.23429 -33.74304 -32.06739 -31.03936 -30.41435 -28.00843 -27.60841 -26.01471 -25.32990 -24.39485 -22.98601 -22.05801 -21.51838 -21.21465 -19.80126 -19.45616 -18.71677 -18.15733 -17.11425 -16.95467 -16.57678 -16.20665 -16.02133 -15.66040 -15.44563 -15.24612 -15.22280 -14.66427 -14.60041 -14.34048 -14.21686 -13.99943 -13.90831 -13.48313 -13.43103 -13.24213 -13.01592 -12.86370 -12.82893 -12.81691 -12.65074 -12.38398 -12.29333 -12.05782 -12.01296 -11.88840 -11.81950 -11.69557 -11.43377 -11.13099 -11.01481 -10.97019 -10.43899 -10.11084 -9.81575 -9.26536 -8.01756 -5.31298 -0.49558 0.05602 1.32459 1.38976 1.42988 1.82255 2.10716 2.43298 2.47826 2.73353 3.31909 3.35969 3.60677 3.66121 3.67438 3.84007 3.92624 4.07306 4.11991 4.15154 4.25742 4.34937 4.42078 4.52094 4.60896 4.66047 4.77182 4.78029 4.81901 4.83905 4.87837 4.91796 4.95576 5.01658 5.04567 5.09480 5.21087 5.21506 5.32967 5.36690 5.38226 5.43107 5.45870 5.59344 5.62488 5.80129 6.23323 6.42883 6.57240 6.80170 7.11450 7.27484 7.90789 8.05644 9.20414 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003332 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.269526 B = 8401.713682 C = 8852.724735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.143 4.143 4 C 0.171 3.829 5 C -0.177 4.177 6 C -0.017 4.017 7 C -0.225 4.225 8 C 0.557 3.443 9 O -0.567 6.567 10 N -0.698 5.698 11 C 0.142 3.858 12 H 0.049 0.951 13 C -0.153 4.153 14 C -0.121 4.121 15 C 0.166 3.834 16 H 0.045 0.955 17 C -0.157 4.157 18 N -0.749 5.749 19 C -0.211 4.211 20 H 0.055 0.945 21 C -0.067 4.067 22 N -0.987 5.987 23 Si 0.945 3.055 24 H -0.293 1.293 25 H -0.298 1.298 26 H -0.245 1.245 27 C 0.346 3.654 28 O -0.483 6.483 29 N -0.533 5.533 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.033 0.967 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.025 0.975 48 H 0.361 0.639 49 H 0.254 0.746 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.159 21.912 9.651 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.200 4.200 4 C 0.033 3.967 5 C -0.196 4.196 6 C -0.043 4.043 7 C -0.231 4.231 8 C 0.344 3.656 9 O -0.447 6.447 10 N -0.350 5.350 11 C 0.038 3.962 12 H 0.068 0.932 13 C -0.211 4.211 14 C -0.159 4.159 15 C 0.059 3.941 16 H 0.063 0.937 17 C -0.217 4.217 18 N -0.393 5.393 19 C -0.342 4.342 20 H 0.073 0.927 21 C -0.258 4.258 22 N -0.639 5.639 23 Si 0.774 3.226 24 H -0.220 1.220 25 H -0.225 1.225 26 H -0.170 1.170 27 C 0.167 3.833 28 O -0.292 6.292 29 N -0.253 5.253 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.205 0.795 38 H 0.197 0.803 39 H 0.249 0.751 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.132 0.868 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.044 0.956 48 H 0.194 0.806 49 H 0.062 0.938 50 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 11.657 20.792 10.653 26.109 hybrid contribution -0.395 -1.539 -1.099 1.932 sum 11.262 19.253 9.553 24.264 Atomic orbital electron populations 1.21813 0.92509 1.01670 1.03797 1.20266 0.96904 0.96746 0.93004 1.21936 1.01274 0.92611 1.04209 1.21885 0.90385 0.87502 0.96955 1.22341 1.01864 1.03741 0.91656 1.22127 0.90528 0.90691 1.00951 1.21139 1.10458 0.97575 0.93976 1.18144 0.77549 0.86340 0.83602 1.90794 1.51603 1.17228 1.85042 1.45696 1.66643 1.14249 1.08458 1.20951 0.94317 0.96162 0.84783 0.93227 1.22105 0.93906 1.03362 1.01723 1.22155 0.94531 1.03164 0.96036 1.20527 0.93736 0.83294 0.96547 0.93721 1.22288 1.00023 1.00376 0.99006 1.42850 1.14538 1.06571 1.75331 1.18961 0.91530 0.93024 1.30695 0.92691 1.25388 0.98163 0.99087 1.03168 1.69869 1.21530 1.16472 1.56012 0.85547 0.78983 0.79436 0.78677 1.22005 1.22494 1.16952 1.19406 0.90515 0.86191 0.87199 1.84615 1.40020 1.12563 1.92006 1.67106 1.14661 1.11362 1.32128 0.91333 0.94387 0.89654 0.90082 0.90194 0.90087 0.92484 0.79495 0.80348 0.75111 0.90593 0.89759 0.94780 0.86751 0.89504 0.90023 0.93177 0.95592 0.80611 0.93757 0.72725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.18 71.98 0.66 -1.24 16 2 C -0.05 -0.74 3.22 -11.54 -0.04 -0.78 16 3 C -0.14 -1.18 8.62 71.98 0.62 -0.56 16 4 C 0.17 3.63 5.79 42.58 0.25 3.88 16 5 C -0.18 -2.83 9.15 22.32 0.20 -2.62 16 6 C -0.02 -0.33 9.64 22.72 0.22 -0.11 16 7 C -0.22 -6.58 5.90 -19.91 -0.12 -6.69 16 8 C 0.56 19.12 7.74 86.69 0.67 19.79 16 9 O -0.57 -25.09 14.86 16.82 0.25 -24.84 16 10 N -0.70 -18.52 4.40 -445.72 -1.96 -20.48 16 11 C 0.14 4.04 2.52 44.99 0.11 4.15 16 12 H 0.05 1.96 7.05 -2.39 -0.02 1.94 16 13 C -0.15 -3.55 9.48 71.98 0.68 -2.86 16 14 C -0.12 -2.82 4.29 30.59 0.13 -2.68 16 15 C 0.17 5.46 2.84 44.99 0.13 5.58 16 16 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 17 C -0.16 -4.58 9.49 71.98 0.68 -3.90 16 18 N -0.75 -33.71 4.30 -322.94 -1.39 -35.10 16 19 C -0.21 -11.99 10.41 84.03 0.87 -11.12 16 20 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 22 N -0.99 -65.19 13.97 21.65 0.30 -64.89 16 23 Si 0.94 47.80 27.73 68.60 1.90 49.70 16 24 H -0.29 -15.20 7.11 99.48 0.71 -14.50 16 25 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 26 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 27 C 0.35 11.38 7.77 85.13 0.66 12.04 16 28 O -0.48 -17.34 11.66 -66.43 -0.77 -18.11 16 29 N -0.53 -15.69 10.28 -296.06 -3.04 -18.73 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 0.40 6.47 -2.39 -0.02 0.38 16 35 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.19 1.36 6.29 -2.91 -0.02 1.34 16 38 H 0.18 1.89 6.52 -2.91 -0.02 1.87 16 39 H 0.41 7.40 6.70 -92.70 -0.62 6.78 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.36 16.05 5.66 -92.71 -0.52 15.53 16 49 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 50 H 0.41 12.80 9.06 -74.06 -0.67 12.12 16 Total: -1.00 -86.84 405.13 0.59 -86.25 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.91 Total: 36.93 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.21 Total: 9.26 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -6.09 Total: -139.20 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.52 Total: -42.95 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.90 Total: 49.70 kcal Total: -86.84 0.59 -86.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135625276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.221 kcal (2) G-P(sol) polarization free energy of solvation -86.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds