Wall clock time and date at job start Tue Mar 31 2020 19:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 C 1.52995 * 109.47234 * 175.00265 * 4 2 1 6 6 H 1.09007 * 109.47350 * 304.99848 * 5 4 2 7 7 C 1.53004 * 109.47157 * 185.00148 * 5 4 2 8 8 N 1.46502 * 109.47556 * 64.99886 * 5 4 2 9 9 C 1.34771 * 120.00188 * 205.00130 * 8 5 4 10 10 O 1.21616 * 120.00207 * 359.97438 * 9 8 5 11 11 C 1.47420 * 120.00253 * 179.97438 * 9 8 5 12 12 C 1.36093 * 126.45074 * 179.68596 * 11 9 8 13 13 O 1.34259 * 106.94634 * 179.89920 * 12 11 9 14 14 C 1.34054 * 108.22897 * 0.36969 * 13 12 11 15 15 C 1.50694 * 125.37605 * 179.73146 * 14 13 12 16 16 C 1.54261 * 110.03666 * 57.20605 * 15 14 13 17 17 C 1.54886 * 104.20021 * 217.10260 * 16 15 14 18 18 C 1.54897 * 102.74487 * 37.94324 * 17 16 15 19 19 C 1.53876 * 110.03326 * 300.03874 * 15 14 13 20 20 N 1.29935 * 109.24059 * 359.76628 * 14 13 12 21 21 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 22 22 C 1.36937 * 119.99777 * 275.00036 * 21 2 1 23 23 H 1.08003 * 119.99797 * 359.97438 * 22 21 2 24 24 C 1.38806 * 120.00162 * 179.97438 * 22 21 2 25 25 N 1.31627 * 119.99952 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00459 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46874 * 59.99800 * 26 24 22 28 28 H 1.48499 * 109.47268 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46977 * 300.00596 * 26 24 22 30 30 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 34 34 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 35 35 H 1.09000 * 109.47236 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.46709 * 299.99515 * 7 5 4 37 37 H 1.08995 * 109.47171 * 59.99427 * 7 5 4 38 38 H 0.96999 * 119.99583 * 24.99847 * 8 5 4 39 39 H 1.07997 * 126.52685 * 0.04055 * 12 11 9 40 40 H 1.09001 * 110.01446 * 178.64821 * 15 14 13 41 41 H 1.09006 * 110.48806 * 335.78172 * 16 15 14 42 42 H 1.09000 * 110.48820 * 98.42204 * 16 15 14 43 43 H 1.08998 * 110.75727 * 279.62860 * 17 16 15 44 44 H 1.09003 * 110.91930 * 156.32474 * 17 16 15 45 45 H 1.09009 * 110.48293 * 203.37976 * 18 17 16 46 46 H 1.08995 * 110.60005 * 80.79612 * 18 17 16 47 47 H 1.09002 * 110.03385 * 238.57510 * 19 15 14 48 48 H 1.08997 * 110.03316 * 359.97438 * 19 15 14 49 49 H 0.96990 * 120.00057 * 94.99539 * 21 2 1 50 50 H 0.96993 * 120.00181 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2678 7 6 4.0644 -1.2251 -2.6241 8 7 4.1537 -1.3343 -0.1824 9 6 5.3747 -0.9912 0.2733 10 8 5.9880 -0.0834 -0.2549 11 6 5.9671 -1.7162 1.4120 12 6 7.1858 -1.4851 1.9719 13 8 7.3274 -2.3635 2.9774 14 6 6.2240 -3.1231 3.0291 15 6 5.9779 -4.2383 4.0123 16 6 6.0832 -3.7034 5.4554 17 6 6.7567 -4.8567 6.2398 18 6 7.7882 -5.4051 5.2227 19 6 7.0620 -5.3203 3.8644 20 7 5.4007 -2.7464 2.0972 21 7 2.0184 -0.6906 1.1962 22 6 2.1492 -0.0075 2.3757 23 1 1.8927 1.0406 2.4241 24 6 2.6114 -0.6618 3.5092 25 7 2.9245 -1.9390 3.4502 26 14 2.7905 0.2702 5.1182 27 1 1.4686 0.8080 5.5284 28 1 3.2995 -0.6482 6.1683 29 1 3.7465 1.3920 4.9366 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2617 -2.1369 35 1 5.1508 -1.1487 -2.6698 36 1 3.7722 -2.2743 -2.6700 37 1 3.6263 -0.6888 -3.4658 38 1 3.6647 -2.0585 0.2386 39 1 7.9016 -0.7361 1.6672 40 1 4.9920 -4.6722 3.8452 41 1 6.7038 -2.8078 5.4860 42 1 5.0920 -3.4957 5.8586 43 1 6.0274 -5.6232 6.5018 44 1 7.2568 -4.4803 7.1323 45 1 8.0413 -6.4394 5.4561 46 1 8.6854 -4.7863 5.2150 47 1 6.6022 -6.2795 3.6263 48 1 7.7658 -5.0390 3.0812 49 1 2.2490 -1.6317 1.1526 50 1 3.2479 -2.3962 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135810504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:21 Heat of formation + Delta-G solvation = -14.917508 kcal Electronic energy + Delta-G solvation = -31060.587831 eV Core-core repulsion = 27089.320320 eV Total energy + Delta-G solvation = -3971.267511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.79129 -39.09144 -37.91623 -36.68151 -34.17068 -34.06740 -32.07929 -31.01982 -30.27141 -28.67129 -28.40756 -27.69620 -26.27672 -23.82831 -23.50184 -21.99599 -21.06780 -20.61407 -20.13150 -19.88122 -19.05976 -17.39209 -17.02886 -16.32922 -16.05442 -15.66229 -15.47167 -15.14618 -14.73282 -14.21280 -13.78447 -13.74550 -13.59518 -13.37319 -13.30096 -12.96588 -12.84184 -12.58593 -12.08189 -11.83310 -11.66678 -11.60420 -11.59722 -11.37442 -11.13781 -11.02727 -10.95084 -10.78118 -10.66205 -10.60730 -10.56484 -10.43428 -10.30662 -10.19723 -9.89530 -9.82321 -9.56462 -9.42968 -8.82818 -8.44701 -8.18528 -6.78156 -5.59706 -2.87222 1.71797 2.78400 3.11355 3.46506 3.48583 3.53353 3.78282 4.14096 4.36855 4.64799 4.67632 4.68256 4.97633 5.15065 5.36949 5.39851 5.45937 5.50010 5.54993 5.59651 5.61427 5.66962 5.69051 5.73773 5.76075 5.88792 5.91549 5.95304 6.03135 6.03419 6.07946 6.19254 6.20447 6.22669 6.30112 6.31609 6.34646 6.41020 6.46883 6.48397 6.61528 6.69549 6.76418 6.93465 7.12964 7.24007 7.83043 8.11960 8.41154 8.54281 8.93408 9.65879 10.20894 10.56888 11.58321 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004851 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.430293 B = 5770.717767 C = 7279.160337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.083 0.917 7 C -0.162 4.162 8 N -0.676 5.676 9 C 0.613 3.387 10 O -0.566 6.566 11 C -0.049 4.049 12 C -0.021 4.021 13 O -0.206 6.206 14 C 0.191 3.809 15 C 0.013 3.987 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.119 4.119 20 N -0.392 5.392 21 N -0.714 5.714 22 C -0.241 4.241 23 H 0.061 0.939 24 C -0.001 4.001 25 N -0.898 5.898 26 Si 0.886 3.114 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.414 0.586 39 H 0.219 0.781 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.380 0.620 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -7.234 -2.950 10.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.063 0.937 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.101 0.899 7 C -0.220 4.220 8 N -0.328 5.328 9 C 0.399 3.601 10 O -0.447 6.447 11 C -0.170 4.170 12 C -0.095 4.095 13 O -0.093 6.093 14 C -0.018 4.018 15 C -0.006 4.006 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.157 4.157 20 N -0.119 5.119 21 N -0.358 5.358 22 C -0.372 4.372 23 H 0.079 0.921 24 C -0.199 4.199 25 N -0.545 5.545 26 Si 0.718 3.282 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.253 0.747 39 H 0.235 0.765 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.215 0.785 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.697 -6.791 -3.302 10.093 hybrid contribution 0.425 0.585 1.396 1.572 sum 7.122 -6.207 -1.906 9.637 Atomic orbital electron populations 1.22426 0.99499 1.00620 0.99752 1.20256 0.91637 0.95622 0.86535 0.93686 1.22209 0.93820 1.01689 0.99470 1.20848 0.92688 0.97240 0.84861 0.89894 1.22210 1.01718 1.00889 0.97220 1.45772 1.17056 1.37145 1.32780 1.16643 0.81435 0.81574 0.80487 1.90718 1.62915 1.31125 1.59911 1.21748 0.93906 0.99802 1.01517 1.24994 0.99902 0.95347 0.89254 1.84271 1.41629 1.38567 1.44816 1.26005 0.80992 0.95998 0.98823 1.20271 1.01425 0.88554 0.90343 1.22438 1.02006 0.98302 0.92894 1.22498 0.98004 0.97824 0.97740 1.22365 0.98331 1.00838 0.94527 1.22250 0.97150 0.98289 0.98057 1.70989 1.26043 1.09914 1.04926 1.42406 1.77950 1.10231 1.05198 1.18963 1.37441 0.93493 0.87321 0.92106 1.24575 1.02359 0.95975 0.96956 1.69654 1.49458 1.07501 1.27838 0.86612 0.77567 0.78969 0.85076 1.21683 1.21908 1.21902 0.92958 0.94756 0.93664 0.91732 0.90853 0.92441 0.92771 0.92078 0.74658 0.76495 0.86310 0.91303 0.90314 0.91158 0.91492 0.91614 0.91602 0.90782 0.91505 0.78453 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.28 2.89 -67.93 -0.20 3.08 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -2.10 4.43 -26.73 -0.12 -2.21 16 5 C 0.15 2.51 2.57 -67.93 -0.17 2.34 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 7 C -0.16 -2.28 9.48 37.16 0.35 -1.92 16 8 N -0.68 -13.18 3.80 -54.88 -0.21 -13.39 16 9 C 0.61 13.06 7.78 -12.52 -0.10 12.96 16 10 O -0.57 -12.80 16.55 5.26 0.09 -12.71 16 11 C -0.05 -1.00 6.99 -83.02 -0.58 -1.59 16 12 C -0.02 -0.38 11.95 29.96 0.36 -0.02 16 13 O -0.21 -3.61 10.55 6.49 0.07 -3.54 16 14 C 0.19 3.47 6.50 -13.08 -0.09 3.38 16 15 C 0.01 0.20 3.44 -90.66 -0.31 -0.11 16 16 C -0.12 -1.67 6.35 -25.08 -0.16 -1.83 16 17 C -0.12 -1.32 6.91 -24.74 -0.17 -1.50 16 18 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 19 C -0.12 -1.38 6.45 -25.61 -0.17 -1.54 16 20 N -0.39 -8.07 10.25 -7.65 -0.08 -8.15 16 21 N -0.71 -16.69 3.84 -53.42 -0.21 -16.90 16 22 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 23 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 24 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 25 N -0.90 -24.02 12.25 55.49 0.68 -23.34 16 26 Si 0.89 22.32 29.55 -169.99 -5.02 17.29 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.41 8.49 6.24 -40.82 -0.25 8.24 16 39 H 0.22 3.19 8.06 -52.49 -0.42 2.77 16 40 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.07 1.05 7.71 -51.93 -0.40 0.65 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 49 H 0.38 9.22 5.70 -40.82 -0.23 8.99 16 50 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 404.92 15.07 6.10 6.10 Total: -1.00 -29.96 404.92 -8.40 -38.36 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -8.41 Total: 15.92 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.41 Total: 0.35 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.19 Total: -61.77 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.16 Total: -16.25 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.96 -8.40 -38.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.444 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds