Wall clock time and date at job start Tue Mar 31 2020 19:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 C 1.52995 * 109.47234 * 175.00265 * 4 2 1 6 6 H 1.09007 * 109.47350 * 304.99848 * 5 4 2 7 7 C 1.53004 * 109.47157 * 185.00148 * 5 4 2 8 8 N 1.46502 * 109.47556 * 64.99886 * 5 4 2 9 9 C 1.34771 * 120.00188 * 205.00130 * 8 5 4 10 10 O 1.21616 * 120.00207 * 359.97438 * 9 8 5 11 11 C 1.47420 * 120.00253 * 179.97438 * 9 8 5 12 12 C 1.36093 * 126.45074 * 179.68596 * 11 9 8 13 13 O 1.34259 * 106.94634 * 179.89920 * 12 11 9 14 14 C 1.34054 * 108.22897 * 0.36969 * 13 12 11 15 15 C 1.50694 * 125.37605 * 179.73146 * 14 13 12 16 16 C 1.54261 * 110.03666 * 57.20605 * 15 14 13 17 17 C 1.54886 * 104.20021 * 217.10260 * 16 15 14 18 18 C 1.54897 * 102.74487 * 37.94324 * 17 16 15 19 19 C 1.53876 * 110.03326 * 300.03874 * 15 14 13 20 20 N 1.29935 * 109.24059 * 359.76628 * 14 13 12 21 21 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 22 22 C 1.36937 * 119.99777 * 275.00036 * 21 2 1 23 23 H 1.08003 * 119.99797 * 359.97438 * 22 21 2 24 24 C 1.38806 * 120.00162 * 179.97438 * 22 21 2 25 25 N 1.31627 * 119.99952 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00459 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46874 * 59.99800 * 26 24 22 28 28 H 1.48499 * 109.47268 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46977 * 300.00596 * 26 24 22 30 30 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 34 34 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 35 35 H 1.09000 * 109.47236 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.46709 * 299.99515 * 7 5 4 37 37 H 1.08995 * 109.47171 * 59.99427 * 7 5 4 38 38 H 0.96999 * 119.99583 * 24.99847 * 8 5 4 39 39 H 1.07997 * 126.52685 * 0.04055 * 12 11 9 40 40 H 1.09001 * 110.01446 * 178.64821 * 15 14 13 41 41 H 1.09006 * 110.48806 * 335.78172 * 16 15 14 42 42 H 1.09000 * 110.48820 * 98.42204 * 16 15 14 43 43 H 1.08998 * 110.75727 * 279.62860 * 17 16 15 44 44 H 1.09003 * 110.91930 * 156.32474 * 17 16 15 45 45 H 1.09009 * 110.48293 * 203.37976 * 18 17 16 46 46 H 1.08995 * 110.60005 * 80.79612 * 18 17 16 47 47 H 1.09002 * 110.03385 * 238.57510 * 19 15 14 48 48 H 1.08997 * 110.03316 * 359.97438 * 19 15 14 49 49 H 0.96990 * 120.00057 * 94.99539 * 21 2 1 50 50 H 0.96993 * 120.00181 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2678 7 6 4.0644 -1.2251 -2.6241 8 7 4.1537 -1.3343 -0.1824 9 6 5.3747 -0.9912 0.2733 10 8 5.9880 -0.0834 -0.2549 11 6 5.9671 -1.7162 1.4120 12 6 7.1858 -1.4851 1.9719 13 8 7.3274 -2.3635 2.9774 14 6 6.2240 -3.1231 3.0291 15 6 5.9779 -4.2383 4.0123 16 6 6.0832 -3.7034 5.4554 17 6 6.7567 -4.8567 6.2398 18 6 7.7882 -5.4051 5.2227 19 6 7.0620 -5.3203 3.8644 20 7 5.4007 -2.7464 2.0972 21 7 2.0184 -0.6906 1.1962 22 6 2.1492 -0.0075 2.3757 23 1 1.8927 1.0406 2.4241 24 6 2.6114 -0.6618 3.5092 25 7 2.9245 -1.9390 3.4502 26 14 2.7905 0.2702 5.1182 27 1 1.4686 0.8080 5.5284 28 1 3.2995 -0.6482 6.1683 29 1 3.7465 1.3920 4.9366 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2617 -2.1369 35 1 5.1508 -1.1487 -2.6698 36 1 3.7722 -2.2743 -2.6700 37 1 3.6263 -0.6888 -3.4658 38 1 3.6647 -2.0585 0.2386 39 1 7.9016 -0.7361 1.6672 40 1 4.9920 -4.6722 3.8452 41 1 6.7038 -2.8078 5.4860 42 1 5.0920 -3.4957 5.8586 43 1 6.0274 -5.6232 6.5018 44 1 7.2568 -4.4803 7.1323 45 1 8.0413 -6.4394 5.4561 46 1 8.6854 -4.7863 5.2150 47 1 6.6022 -6.2795 3.6263 48 1 7.7658 -5.0390 3.0812 49 1 2.2490 -1.6317 1.1526 50 1 3.2479 -2.3962 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135810504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:20 Heat of formation + Delta-G solvation = -33.687509 kcal Electronic energy + Delta-G solvation = -31061.401760 eV Core-core repulsion = 27089.320320 eV Total energy + Delta-G solvation = -3972.081440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.23484 -40.64771 -38.94175 -38.26582 -35.74779 -35.65825 -33.90631 -32.38939 -31.70264 -30.15801 -29.64102 -28.92531 -27.59829 -25.48011 -25.30181 -23.29211 -22.45980 -21.66122 -21.55092 -21.30750 -20.44313 -19.01861 -18.81076 -17.68421 -17.51095 -17.12756 -16.65396 -16.60755 -16.21080 -15.80895 -15.54025 -15.36997 -15.01068 -14.70180 -14.38912 -14.30026 -14.26318 -14.14504 -13.56631 -13.30923 -13.20869 -12.91063 -12.79995 -12.73832 -12.61959 -12.44517 -12.30216 -12.15713 -12.01916 -11.95254 -11.91570 -11.72370 -11.67720 -11.54069 -11.42168 -11.41657 -11.38026 -11.05003 -10.80957 -9.97664 -9.67376 -8.71392 -7.68804 -4.93462 0.24275 1.29015 1.39945 1.41798 1.45338 1.73233 2.28576 2.59093 2.61703 3.03283 3.57876 3.64530 3.69550 3.74411 3.89679 4.00827 4.08183 4.16722 4.18536 4.38762 4.46851 4.52754 4.56763 4.57540 4.58367 4.69536 4.74038 4.81207 4.83943 4.87004 4.88011 4.91794 4.95540 5.07290 5.07885 5.12703 5.16191 5.19538 5.25658 5.33507 5.36157 5.37449 5.43185 5.49380 5.63647 5.66448 5.75341 6.46807 6.58460 6.88844 7.33176 7.55761 8.28667 8.55598 9.47050 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004851 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.430293 B = 5770.717767 C = 7279.160337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.143 3.857 6 H 0.060 0.940 7 C -0.151 4.151 8 N -0.672 5.672 9 C 0.603 3.397 10 O -0.590 6.590 11 C -0.085 4.085 12 C -0.010 4.010 13 O -0.201 6.201 14 C 0.191 3.809 15 C 0.011 3.989 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.112 4.112 20 N -0.421 5.421 21 N -0.718 5.718 22 C -0.247 4.247 23 H 0.046 0.954 24 C -0.038 4.038 25 N -0.898 5.898 26 Si 0.924 3.076 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.304 1.304 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.409 0.591 39 H 0.247 0.753 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.060 0.940 49 H 0.375 0.625 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -8.531 -3.593 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.044 0.956 4 C -0.158 4.158 5 C 0.039 3.961 6 H 0.078 0.922 7 C -0.209 4.209 8 N -0.322 5.322 9 C 0.389 3.611 10 O -0.473 6.473 11 C -0.205 4.205 12 C -0.084 4.084 13 O -0.088 6.088 14 C -0.019 4.019 15 C -0.009 4.009 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.151 4.151 20 N -0.148 5.148 21 N -0.361 5.361 22 C -0.379 4.379 23 H 0.065 0.935 24 C -0.235 4.235 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.232 1.232 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.247 0.753 39 H 0.263 0.737 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.079 0.921 49 H 0.210 0.790 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.828 -8.086 -3.975 11.304 hybrid contribution 0.335 1.050 1.576 1.924 sum 7.163 -7.036 -2.398 10.323 Atomic orbital electron populations 1.22263 0.97766 1.00877 1.00283 1.20473 0.92748 0.94753 0.86695 0.95587 1.22130 0.92723 1.01998 0.98901 1.21051 0.93562 0.96005 0.85489 0.92210 1.22105 1.00724 1.01777 0.96258 1.45865 1.16426 1.36759 1.33127 1.16879 0.81935 0.81512 0.80739 1.90681 1.63572 1.32170 1.60839 1.21910 0.95244 1.00920 1.02436 1.25532 0.99527 0.95044 0.88331 1.84293 1.41440 1.38438 1.44599 1.26704 0.80560 0.96093 0.98524 1.20473 1.02113 0.88491 0.89775 1.22422 1.00975 0.99280 0.93157 1.22484 0.98252 0.96572 0.97865 1.22357 0.97694 1.02388 0.92898 1.22242 0.96102 0.97650 0.99058 1.70941 1.27143 1.10642 1.06107 1.42434 1.78269 1.09914 1.05524 1.19021 1.37051 0.93043 0.88811 0.93547 1.24975 1.03229 0.96800 0.98486 1.69721 1.49586 1.07541 1.27694 0.86015 0.76979 0.77824 0.83510 1.21633 1.21747 1.23208 0.95424 0.91220 0.93463 0.90861 0.87017 0.94068 0.91588 0.89109 0.75285 0.73729 0.87513 0.92852 0.92363 0.89931 0.90271 0.89001 0.91595 0.89015 0.92070 0.79036 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.49 71.98 0.68 -4.48 16 2 C 0.16 6.15 2.89 44.99 0.13 6.28 16 3 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 4 C -0.12 -3.49 4.43 30.59 0.14 -3.36 16 5 C 0.14 4.73 2.57 44.99 0.12 4.84 16 6 H 0.06 2.26 7.58 -2.38 -0.02 2.25 16 7 C -0.15 -3.94 9.48 71.98 0.68 -3.25 16 8 N -0.67 -26.54 3.80 -445.79 -1.69 -28.24 16 9 C 0.60 26.36 7.78 86.66 0.67 27.04 16 10 O -0.59 -27.32 16.55 -4.08 -0.07 -27.38 16 11 C -0.08 -3.59 6.99 40.41 0.28 -3.31 16 12 C -0.01 -0.38 11.95 67.32 0.80 0.43 16 13 O -0.20 -7.06 10.55 0.32 0.00 -7.06 16 14 C 0.19 7.03 6.50 88.39 0.57 7.60 16 15 C 0.01 0.32 3.44 -10.82 -0.04 0.28 16 16 C -0.12 -3.39 6.35 31.67 0.20 -3.19 16 17 C -0.11 -2.23 6.91 31.89 0.22 -2.01 16 18 C -0.12 -2.02 6.83 31.67 0.22 -1.80 16 19 C -0.11 -2.42 6.45 31.32 0.20 -2.22 16 20 N -0.42 -17.81 10.25 -293.03 -3.00 -20.81 16 21 N -0.72 -33.92 3.84 -322.93 -1.24 -35.16 16 22 C -0.25 -13.51 9.93 84.03 0.83 -12.68 16 23 H 0.05 2.63 7.83 -2.91 -0.02 2.61 16 24 C -0.04 -2.10 5.50 84.86 0.47 -1.64 16 25 N -0.90 -48.96 12.25 21.65 0.27 -48.69 16 26 Si 0.92 46.69 29.55 68.60 2.03 48.72 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 28 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.30 -15.85 7.11 99.48 0.71 -15.15 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.41 17.05 6.24 -92.71 -0.58 16.47 16 39 H 0.25 7.10 8.06 -2.91 -0.02 7.07 16 40 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.05 1.65 7.71 -2.38 -0.02 1.63 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.40 7.67 -2.39 -0.02 1.38 16 49 H 0.37 18.39 5.70 -92.72 -0.53 17.86 16 50 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -66.80 404.92 2.31 -64.50 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -0.17 Total: 45.59 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 6.19 Total: 8.54 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -5.67 Total: -132.90 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.06 Total: -34.44 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -66.80 2.31 -64.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.808 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds