Wall clock time and date at job start Tue Mar 31 2020 19:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21622 * 120.00045 * 0.02562 * 18 17 2 20 20 C 1.47415 * 120.00189 * 180.02562 * 18 17 2 21 21 C 1.36092 * 126.45076 * 179.68823 * 20 18 17 22 22 O 1.34259 * 106.95186 * 179.83851 * 21 20 18 23 23 C 1.34049 * 108.22576 * 0.42668 * 22 21 20 24 24 C 1.50692 * 125.38145 * 179.69526 * 23 22 21 25 25 C 1.54259 * 110.03583 * 57.20518 * 24 23 22 26 26 C 1.54888 * 104.20089 * 217.10770 * 25 24 23 27 27 C 1.54885 * 102.74888 * 37.93963 * 26 25 24 28 28 C 1.53878 * 110.03504 * 300.03914 * 24 23 22 29 29 N 1.29941 * 109.24271 * 359.73177 * 23 22 21 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 36 36 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 37 37 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.08001 * 126.52470 * 0.02562 * 21 20 18 42 42 H 1.09001 * 110.01806 * 178.64969 * 24 23 22 43 43 H 1.09001 * 110.48509 * 335.79077 * 25 24 23 44 44 H 1.09003 * 110.49012 * 98.42604 * 25 24 23 45 45 H 1.08997 * 110.75504 * 279.62790 * 26 25 24 46 46 H 1.09000 * 110.91375 * 156.33014 * 26 25 24 47 47 H 1.09000 * 110.48942 * 203.38033 * 27 26 25 48 48 H 1.09005 * 110.59751 * 80.79134 * 27 26 25 49 49 H 1.09002 * 110.03584 * 238.57314 * 28 24 23 50 50 H 1.09000 * 110.02660 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8574 1.1615 2.4119 20 6 2.6388 -0.7132 3.5607 21 6 2.8240 -0.1644 4.7922 22 8 3.2774 -1.1424 5.5925 23 6 3.3778 -2.2651 4.8669 24 6 3.8559 -3.5977 5.3830 25 6 2.9844 -4.0467 6.5740 26 6 3.9831 -4.7346 7.5376 27 6 5.2473 -3.8490 7.4091 28 6 5.2947 -3.4721 5.9139 29 7 2.9986 -2.0226 3.6479 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.7722 -2.2743 -2.6698 36 1 3.6264 -0.6888 -3.4656 37 1 5.1509 -1.1487 -2.6696 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.6383 0.8618 5.0732 42 1 3.8150 -4.3422 4.5879 43 1 2.5225 -3.1845 7.0551 44 1 2.2233 -4.7541 6.2447 45 1 4.1915 -5.7545 7.2143 46 1 3.6067 -4.7245 8.5604 47 1 6.1376 -4.4120 7.6890 48 1 5.1532 -2.9547 8.0251 49 1 5.9519 -4.1562 5.3770 50 1 5.6473 -2.4472 5.7978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135810505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:24 Heat of formation + Delta-G solvation = -14.937579 kcal Electronic energy + Delta-G solvation = -31072.724418 eV Core-core repulsion = 27101.456037 eV Total energy + Delta-G solvation = -3971.268382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78821 -39.09070 -37.91544 -36.68196 -34.16776 -34.06852 -32.08112 -31.01959 -30.27078 -28.66914 -28.40982 -27.69301 -26.27727 -23.82673 -23.50431 -21.99003 -21.06900 -20.62738 -20.13221 -19.87296 -19.05834 -17.38516 -17.03229 -16.31601 -16.04614 -15.69318 -15.46448 -15.14894 -14.73211 -14.20129 -13.78481 -13.76651 -13.57641 -13.37618 -13.29259 -12.95723 -12.84203 -12.59167 -12.08258 -11.83471 -11.66770 -11.61738 -11.59757 -11.37039 -11.09344 -11.06371 -10.95957 -10.79439 -10.69472 -10.65025 -10.49956 -10.41681 -10.30965 -10.17834 -9.89567 -9.81708 -9.56806 -9.43045 -8.83508 -8.44489 -8.18397 -6.78308 -5.60043 -2.87437 1.72131 2.78656 3.11715 3.45057 3.50082 3.53032 3.78302 4.14381 4.36687 4.63755 4.67353 4.68575 4.99069 5.15101 5.37055 5.39630 5.48302 5.49907 5.55017 5.57927 5.60693 5.67391 5.69071 5.72601 5.75615 5.88478 5.90748 5.95289 6.03061 6.05113 6.07868 6.19246 6.20261 6.21871 6.30647 6.31845 6.38293 6.41118 6.45524 6.47999 6.61483 6.69433 6.76742 6.93373 7.12867 7.23952 7.83351 8.12065 8.41235 8.53881 8.93444 9.65632 10.20642 10.56625 11.58067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004848 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.064356 B = 5774.332470 C = 7252.054372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.045 0.955 7 C -0.163 4.163 8 N -0.714 5.714 9 C -0.240 4.240 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.897 5.897 13 Si 0.885 3.115 14 H -0.296 1.296 15 H -0.293 1.293 16 H -0.286 1.286 17 N -0.676 5.676 18 C 0.613 3.387 19 O -0.566 6.566 20 C -0.049 4.049 21 C -0.021 4.021 22 O -0.206 6.206 23 C 0.191 3.809 24 C 0.014 3.986 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.118 4.118 29 N -0.391 5.391 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.051 0.949 38 H 0.380 0.620 39 H 0.249 0.751 40 H 0.414 0.586 41 H 0.219 0.781 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -2.846 6.391 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.063 0.937 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.372 4.372 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.544 5.544 13 Si 0.717 3.283 14 H -0.224 1.224 15 H -0.220 1.220 16 H -0.212 1.212 17 N -0.328 5.328 18 C 0.399 3.601 19 O -0.447 6.447 20 C -0.170 4.170 21 C -0.094 4.094 22 O -0.093 6.093 23 C -0.019 4.019 24 C -0.005 4.005 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.162 4.162 28 C -0.156 4.156 29 N -0.119 5.119 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.215 0.785 39 H 0.060 0.940 40 H 0.253 0.747 41 H 0.235 0.765 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.096 0.904 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.704 -2.438 5.944 10.031 hybrid contribution 1.315 0.336 0.848 1.601 sum -6.389 -2.102 6.792 9.559 Atomic orbital electron populations 1.22210 0.96246 1.01682 1.01898 1.20848 0.92513 0.97710 0.84563 0.89895 1.22209 0.97984 1.00603 0.96394 1.20256 0.89581 0.95818 0.88395 0.93687 1.22424 1.01467 1.00298 0.98102 1.42415 1.18705 1.40069 1.34607 1.19010 0.93461 1.13622 1.11063 0.92049 1.24576 0.97437 0.98976 0.98894 1.69659 1.36507 1.23586 1.24654 0.86540 0.85812 0.77114 0.78839 1.22372 1.22003 1.21162 1.45774 1.64172 1.14905 1.07906 1.16643 0.76394 0.85095 0.82000 1.90719 1.53239 1.15235 1.85489 1.21746 1.08228 0.91733 0.95298 1.24992 1.00911 0.93851 0.89691 1.84269 1.64804 1.18794 1.41410 1.26007 1.01578 0.88880 0.85406 1.20263 0.94686 0.87131 0.98448 1.22487 0.97731 1.00560 0.95015 1.22477 0.95347 0.99071 0.99067 1.22384 0.97955 0.99514 0.96321 1.22193 0.95176 1.02828 0.95400 1.70989 1.11292 1.13389 1.16182 0.92764 0.92436 0.92086 0.90855 0.91730 0.93667 0.94755 0.92949 0.78454 0.94048 0.74656 0.76504 0.86355 0.91171 0.90850 0.91155 0.91506 0.91563 0.91657 0.90441 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.48 37.16 0.35 -1.92 16 2 C 0.15 2.51 2.57 -67.93 -0.17 2.34 16 3 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 4 C -0.13 -2.09 4.43 -26.73 -0.12 -2.21 16 5 C 0.17 3.28 2.89 -67.93 -0.20 3.08 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 8 N -0.71 -16.69 3.84 -53.42 -0.21 -16.89 16 9 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 10 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 11 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 12 N -0.90 -24.02 12.23 55.49 0.68 -23.34 16 13 Si 0.88 22.33 29.55 -169.99 -5.02 17.31 16 14 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 N -0.68 -13.18 3.80 -54.88 -0.21 -13.39 16 18 C 0.61 13.07 7.78 -12.53 -0.10 12.98 16 19 O -0.57 -12.81 16.55 5.26 0.09 -12.72 16 20 C -0.05 -1.01 6.99 -83.02 -0.58 -1.59 16 21 C -0.02 -0.38 11.95 29.96 0.36 -0.02 16 22 O -0.21 -3.62 10.55 6.51 0.07 -3.55 16 23 C 0.19 3.46 6.50 -13.08 -0.09 3.38 16 24 C 0.01 0.21 3.44 -90.66 -0.31 -0.11 16 25 C -0.12 -1.38 6.35 -25.08 -0.16 -1.54 16 26 C -0.12 -1.19 6.91 -24.74 -0.17 -1.36 16 27 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 28 C -0.12 -1.68 6.45 -25.61 -0.17 -1.84 16 29 N -0.39 -8.08 10.23 -7.66 -0.08 -8.15 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.38 9.21 5.70 -40.82 -0.23 8.98 16 39 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 40 H 0.41 8.49 6.24 -40.82 -0.25 8.24 16 41 H 0.22 3.22 8.06 -52.49 -0.42 2.79 16 42 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 43 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -30.03 404.87 -8.40 -38.44 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -8.41 Total: 15.83 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.41 Total: 0.38 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.19 Total: -61.78 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.16 Total: -16.27 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.03 -8.40 -38.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.498 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds