Wall clock time and date at job start Tue Mar 31 2020 19:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21622 * 120.00045 * 0.02562 * 18 17 2 20 20 C 1.47415 * 120.00189 * 180.02562 * 18 17 2 21 21 C 1.36092 * 126.45076 * 179.68823 * 20 18 17 22 22 O 1.34259 * 106.95186 * 179.83851 * 21 20 18 23 23 C 1.34049 * 108.22576 * 0.42668 * 22 21 20 24 24 C 1.50692 * 125.38145 * 179.69526 * 23 22 21 25 25 C 1.54259 * 110.03583 * 57.20518 * 24 23 22 26 26 C 1.54888 * 104.20089 * 217.10770 * 25 24 23 27 27 C 1.54885 * 102.74888 * 37.93963 * 26 25 24 28 28 C 1.53878 * 110.03504 * 300.03914 * 24 23 22 29 29 N 1.29941 * 109.24271 * 359.73177 * 23 22 21 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 36 36 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 37 37 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.08001 * 126.52470 * 0.02562 * 21 20 18 42 42 H 1.09001 * 110.01806 * 178.64969 * 24 23 22 43 43 H 1.09001 * 110.48509 * 335.79077 * 25 24 23 44 44 H 1.09003 * 110.49012 * 98.42604 * 25 24 23 45 45 H 1.08997 * 110.75504 * 279.62790 * 26 25 24 46 46 H 1.09000 * 110.91375 * 156.33014 * 26 25 24 47 47 H 1.09000 * 110.48942 * 203.38033 * 27 26 25 48 48 H 1.09005 * 110.59751 * 80.79134 * 27 26 25 49 49 H 1.09002 * 110.03584 * 238.57314 * 28 24 23 50 50 H 1.09000 * 110.02660 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8574 1.1615 2.4119 20 6 2.6388 -0.7132 3.5607 21 6 2.8240 -0.1644 4.7922 22 8 3.2774 -1.1424 5.5925 23 6 3.3778 -2.2651 4.8669 24 6 3.8559 -3.5977 5.3830 25 6 2.9844 -4.0467 6.5740 26 6 3.9831 -4.7346 7.5376 27 6 5.2473 -3.8490 7.4091 28 6 5.2947 -3.4721 5.9139 29 7 2.9986 -2.0226 3.6479 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.7722 -2.2743 -2.6698 36 1 3.6264 -0.6888 -3.4656 37 1 5.1509 -1.1487 -2.6696 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.6383 0.8618 5.0732 42 1 3.8150 -4.3422 4.5879 43 1 2.5225 -3.1845 7.0551 44 1 2.2233 -4.7541 6.2447 45 1 4.1915 -5.7545 7.2143 46 1 3.6067 -4.7245 8.5604 47 1 6.1376 -4.4120 7.6890 48 1 5.1532 -2.9547 8.0251 49 1 5.9519 -4.1562 5.3770 50 1 5.6473 -2.4472 5.7978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135810505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:23 Heat of formation + Delta-G solvation = -33.774506 kcal Electronic energy + Delta-G solvation = -31073.541249 eV Core-core repulsion = 27101.456037 eV Total energy + Delta-G solvation = -3972.085212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.23587 -40.64851 -38.94222 -38.26688 -35.74972 -35.65949 -33.90886 -32.39117 -31.70315 -30.15989 -29.64310 -28.92605 -27.59778 -25.48342 -25.30450 -23.29602 -22.45578 -21.66204 -21.53950 -21.31343 -20.45221 -19.01939 -18.81327 -17.68874 -17.49260 -17.15258 -16.67586 -16.58997 -16.21571 -15.79622 -15.54401 -15.38065 -15.01391 -14.70401 -14.37348 -14.30396 -14.27351 -14.14913 -13.56672 -13.30942 -13.21218 -12.93387 -12.80671 -12.72510 -12.61114 -12.46253 -12.30076 -12.13735 -12.02521 -11.94284 -11.92659 -11.72476 -11.63560 -11.54536 -11.45266 -11.42109 -11.38181 -11.05229 -10.82026 -9.97817 -9.67486 -8.71638 -7.69359 -4.93764 0.24045 1.28939 1.37856 1.41914 1.45429 1.73241 2.28246 2.59027 2.61138 3.02938 3.57565 3.64834 3.69223 3.74489 3.89619 4.00592 4.07691 4.15901 4.18492 4.38735 4.47863 4.53529 4.56481 4.57373 4.57634 4.69556 4.73966 4.79559 4.83970 4.87421 4.88671 4.91817 4.95503 5.07503 5.08178 5.12777 5.16209 5.19307 5.27789 5.32495 5.35895 5.37195 5.43234 5.49392 5.63719 5.66472 5.75270 6.46341 6.58280 6.88640 7.33017 7.55412 8.28347 8.55224 9.46717 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004848 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.064356 B = 5774.332470 C = 7252.054372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.060 0.940 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.026 0.974 7 C -0.152 4.152 8 N -0.718 5.718 9 C -0.245 4.245 10 H 0.047 0.953 11 C -0.038 4.038 12 N -0.898 5.898 13 Si 0.923 3.077 14 H -0.309 1.309 15 H -0.292 1.292 16 H -0.286 1.286 17 N -0.672 5.672 18 C 0.603 3.397 19 O -0.590 6.590 20 C -0.085 4.085 21 C -0.011 4.011 22 O -0.201 6.201 23 C 0.191 3.809 24 C 0.011 3.989 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.118 4.118 29 N -0.421 5.421 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.375 0.625 39 H 0.245 0.755 40 H 0.409 0.591 41 H 0.246 0.754 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 -3.772 6.504 11.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.361 5.361 9 C -0.378 4.378 10 H 0.065 0.935 11 C -0.235 4.235 12 N -0.545 5.545 13 Si 0.756 3.244 14 H -0.238 1.238 15 H -0.218 1.218 16 H -0.212 1.212 17 N -0.322 5.322 18 C 0.389 3.611 19 O -0.473 6.473 20 C -0.205 4.205 21 C -0.085 4.085 22 O -0.088 6.088 23 C -0.019 4.019 24 C -0.008 4.008 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.157 4.157 29 N -0.148 5.148 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.210 0.790 39 H 0.055 0.945 40 H 0.247 0.753 41 H 0.262 0.738 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.844 -3.369 6.008 11.210 hybrid contribution 1.689 0.670 0.758 1.968 sum -7.156 -2.699 6.766 10.211 Atomic orbital electron populations 1.22105 0.93543 1.02657 1.02564 1.21053 0.94571 0.96338 0.84144 0.92199 1.22130 0.95013 1.01381 0.97229 1.20475 0.92061 0.94318 0.87819 0.95574 1.22261 0.99959 1.00745 0.98218 1.42445 1.17705 1.40233 1.35762 1.19058 0.94746 1.12963 1.10991 0.93509 1.24969 0.99204 0.99737 0.99584 1.69722 1.36644 1.23664 1.24493 0.85935 0.84167 0.76391 0.77883 1.23831 1.21803 1.21156 1.45867 1.63488 1.14542 1.08271 1.16876 0.76401 0.85019 0.82765 1.90682 1.54619 1.15987 1.85976 1.21912 1.10122 0.92353 0.96106 1.25527 0.99226 0.94765 0.88988 1.84290 1.64597 1.18726 1.41176 1.26707 1.00349 0.89818 0.85007 1.20475 0.95706 0.85183 0.99459 1.22478 0.97911 1.00848 0.93853 1.22472 0.93722 0.99007 0.99749 1.22373 0.99562 1.00130 0.93527 1.22191 0.94587 1.00860 0.98046 1.70941 1.12698 1.13664 1.17498 0.91577 0.94072 0.89112 0.87013 0.90853 0.93453 0.91222 0.95415 0.79032 0.94478 0.75278 0.73777 0.87420 0.91507 0.89554 0.89952 0.89298 0.90021 0.91568 0.90939 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.48 71.98 0.68 -3.25 16 2 C 0.14 4.72 2.57 44.99 0.12 4.84 16 3 H 0.06 2.26 7.58 -2.39 -0.02 2.25 16 4 C -0.12 -3.49 4.43 30.60 0.14 -3.35 16 5 C 0.16 6.14 2.89 44.99 0.13 6.27 16 6 H 0.03 1.09 8.08 -2.39 -0.02 1.07 16 7 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 8 N -0.72 -33.87 3.84 -322.93 -1.24 -35.11 16 9 C -0.24 -13.40 9.93 84.04 0.83 -12.57 16 10 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 11 C -0.04 -2.10 5.50 84.86 0.47 -1.64 16 12 N -0.90 -48.96 12.23 21.65 0.26 -48.69 16 13 Si 0.92 46.77 29.55 68.60 2.03 48.80 16 14 H -0.31 -16.26 7.11 99.48 0.71 -15.55 16 15 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 N -0.67 -26.53 3.80 -445.79 -1.69 -28.22 16 18 C 0.60 26.40 7.78 86.66 0.67 27.07 16 19 O -0.59 -27.34 16.55 -4.10 -0.07 -27.41 16 20 C -0.08 -3.60 6.99 40.41 0.28 -3.31 16 21 C -0.01 -0.41 11.95 67.32 0.80 0.40 16 22 O -0.20 -7.12 10.55 0.36 0.00 -7.11 16 23 C 0.19 7.05 6.50 88.39 0.57 7.62 16 24 C 0.01 0.33 3.44 -10.82 -0.04 0.29 16 25 C -0.11 -2.41 6.35 31.67 0.20 -2.21 16 26 C -0.11 -1.87 6.91 31.88 0.22 -1.65 16 27 C -0.12 -2.41 6.83 31.67 0.22 -2.19 16 28 C -0.12 -3.38 6.45 31.32 0.20 -3.18 16 29 N -0.42 -17.83 10.23 -293.04 -3.00 -20.82 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.37 18.37 5.70 -92.71 -0.53 17.84 16 39 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 40 H 0.41 17.04 6.24 -92.71 -0.58 16.47 16 41 H 0.25 7.17 8.06 -2.91 -0.02 7.14 16 42 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.07 1.49 7.71 -2.39 -0.02 1.47 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.04 1.28 7.67 -2.39 -0.02 1.26 16 Total: -1.00 -66.98 404.87 2.31 -64.66 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.17 Total: 45.24 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.19 Total: 8.67 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -5.67 Total: -132.85 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.06 Total: -34.52 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -66.98 2.31 -64.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.887 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds