Wall clock time and date at job start Tue Mar 31 2020 19:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46768 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00427 * 2 1 3 5 5 C 1.53001 * 109.46991 * 185.00337 * 4 2 1 6 6 H 1.09001 * 109.46817 * 304.99874 * 5 4 2 7 7 C 1.53002 * 109.47039 * 185.00031 * 5 4 2 8 8 N 1.46502 * 109.47487 * 64.99719 * 5 4 2 9 9 C 1.34772 * 120.00269 * 205.00009 * 8 5 4 10 10 O 1.21618 * 119.99565 * 0.02562 * 9 8 5 11 11 C 1.47416 * 120.00415 * 179.97438 * 9 8 5 12 12 C 1.36091 * 126.45460 * 179.97438 * 11 9 8 13 13 O 1.34247 * 106.95153 * 180.02562 * 12 11 9 14 14 C 1.34053 * 108.22943 * 0.02562 * 13 12 11 15 15 C 1.50698 * 125.37883 * 180.02562 * 14 13 12 16 16 C 1.54272 * 110.03357 * 57.12419 * 15 14 13 17 17 C 1.54894 * 104.19502 * 217.10541 * 16 15 14 18 18 C 1.54884 * 102.74803 * 37.94506 * 17 16 15 19 19 C 1.53878 * 110.03338 * 299.96023 * 15 14 13 20 20 N 1.29933 * 109.24350 * 359.97438 * 14 13 12 21 21 N 1.46498 * 109.46805 * 240.00589 * 2 1 3 22 22 C 1.36937 * 120.00128 * 85.00104 * 21 2 1 23 23 H 1.07997 * 120.00320 * 359.97438 * 22 21 2 24 24 C 1.38813 * 119.99969 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99903 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00134 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47123 * 89.99841 * 26 24 22 28 28 H 1.48498 * 109.46991 * 210.00016 * 26 24 22 29 29 H 1.48500 * 109.46937 * 329.99644 * 26 24 22 30 30 H 1.08994 * 109.47372 * 59.99930 * 1 2 3 31 31 H 1.09005 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46844 * 299.99484 * 1 2 3 33 33 H 1.08992 * 109.47483 * 64.99918 * 4 2 1 34 34 H 1.09004 * 109.46523 * 304.99569 * 4 2 1 35 35 H 1.08991 * 109.47472 * 59.99735 * 7 5 4 36 36 H 1.08998 * 109.47016 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.46765 * 299.99747 * 7 5 4 38 38 H 0.97002 * 119.99887 * 25.00241 * 8 5 4 39 39 H 1.08006 * 126.52112 * 0.04428 * 12 11 9 40 40 H 1.08993 * 110.01666 * 178.56558 * 15 14 13 41 41 H 1.08998 * 110.48264 * 335.78259 * 16 15 14 42 42 H 1.09002 * 110.48517 * 98.42925 * 16 15 14 43 43 H 1.09000 * 110.75386 * 279.62812 * 17 16 15 44 44 H 1.08999 * 110.91149 * 156.33396 * 17 16 15 45 45 H 1.08999 * 110.48523 * 203.37945 * 18 17 16 46 46 H 1.09000 * 110.60104 * 80.79059 * 18 17 16 47 47 H 1.09004 * 110.02710 * 238.57007 * 19 15 14 48 48 H 1.09002 * 110.03200 * 359.97438 * 19 15 14 49 49 H 0.97004 * 119.99866 * 264.99057 * 21 2 1 50 50 H 0.97006 * 119.99779 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3136 6 1 3.9955 -0.9921 0.3866 7 6 4.0853 -1.4383 2.4923 8 7 3.9480 0.7895 1.4924 9 6 5.1612 1.2137 1.0867 10 8 5.9377 0.4321 0.5717 11 6 5.5465 2.6252 1.2661 12 6 6.7307 3.1921 0.9075 13 8 6.6633 4.4886 1.2491 14 6 5.4649 4.7139 1.8058 15 6 4.9815 6.0420 2.3288 16 6 5.0362 7.1023 1.2096 17 6 5.4718 8.3992 1.9359 18 6 6.5001 7.8816 2.9721 19 6 5.9123 6.5375 3.4495 20 7 4.7854 3.6065 1.8223 21 7 2.0183 -0.6905 -1.1962 22 6 2.1491 -0.0073 -2.3758 23 1 1.8919 1.0405 -2.4243 24 6 2.6122 -0.6614 -3.5091 25 7 2.9261 -1.9383 -3.4499 26 14 2.7900 0.2704 -5.1184 27 1 4.1517 0.8564 -5.2032 28 1 2.5802 -0.6613 -6.2555 29 1 1.7791 1.3567 -5.1755 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7518 -1.7715 1.2055 34 1 1.6055 -0.2617 2.1369 35 1 3.8004 -2.4819 2.3593 36 1 5.1716 -1.3617 2.5379 37 1 3.6548 -1.0594 3.4191 38 1 3.3285 1.4129 1.9028 39 1 7.5655 2.6937 0.4372 40 1 3.9628 5.9466 2.7044 41 1 5.7710 6.8225 0.4547 42 1 4.0528 7.2304 0.7572 43 1 4.6227 8.8665 2.4345 44 1 5.9409 9.0955 1.2408 45 1 6.5850 8.5784 3.8060 46 1 7.4723 7.7280 2.5039 47 1 5.3450 6.6835 4.3687 48 1 6.7134 5.8172 3.6154 49 1 2.2491 -1.6317 -1.1527 50 1 3.2502 -2.3953 -4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135810506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:27 Heat of formation + Delta-G solvation = -28.114768 kcal Electronic energy + Delta-G solvation = -29462.756511 eV Core-core repulsion = 25490.916724 eV Total energy + Delta-G solvation = -3971.839787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.51005 -39.38064 -38.41762 -36.76923 -34.89734 -34.38184 -32.08686 -31.53597 -30.46601 -29.14495 -28.54115 -28.26681 -26.27045 -24.35924 -23.52355 -22.62402 -21.48577 -21.05685 -20.45888 -19.76746 -19.59697 -18.03179 -17.15433 -16.88296 -16.62216 -15.98065 -15.85960 -15.58521 -14.75823 -14.47742 -14.17452 -14.04439 -13.81308 -13.76025 -13.60078 -13.43412 -12.94717 -12.64826 -12.18395 -12.10668 -11.95988 -11.91940 -11.67655 -11.55807 -11.53841 -11.48566 -11.24785 -11.13026 -11.00213 -10.97552 -10.88245 -10.77549 -10.56394 -10.36016 -10.16773 -9.83745 -9.81268 -9.55504 -9.04757 -8.81940 -8.62286 -6.85580 -5.67249 -2.94671 1.13174 2.01075 2.46297 3.33337 3.49135 3.53858 3.55159 3.58497 3.72598 4.14692 4.17601 4.50941 4.67401 4.83943 4.86854 4.98306 5.04200 5.07844 5.15743 5.20855 5.24545 5.44739 5.46551 5.46974 5.51223 5.56391 5.61500 5.66934 5.69163 5.75529 5.76623 5.84490 5.93570 5.95291 5.99915 6.02693 6.09172 6.20714 6.35927 6.41102 6.50167 6.63754 6.76858 6.87923 6.99112 7.14668 7.40679 7.78511 7.89178 8.51177 8.52971 9.62590 10.20388 10.54975 11.55614 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003127 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.005294 B = 8951.623742 C = 9944.257627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.696 5.696 9 C 0.600 3.400 10 O -0.531 6.531 11 C -0.062 4.062 12 C 0.006 3.994 13 O -0.195 6.195 14 C 0.200 3.800 15 C 0.004 3.996 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.119 4.119 20 N -0.457 5.457 21 N -0.720 5.720 22 C -0.231 4.231 23 H 0.066 0.934 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.402 0.598 39 H 0.230 0.770 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 17.542 17.603 25.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.346 5.346 9 C 0.385 3.615 10 O -0.407 6.407 11 C -0.182 4.182 12 C -0.068 4.068 13 O -0.081 6.081 14 C -0.009 4.009 15 C -0.015 4.015 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.158 4.158 20 N -0.187 5.187 21 N -0.362 5.362 22 C -0.363 4.363 23 H 0.084 0.916 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.733 3.267 27 H -0.219 1.219 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.237 0.763 39 H 0.247 0.753 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.216 0.784 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.247 16.999 17.326 24.833 hybrid contribution 0.502 0.332 -1.159 1.306 sum 5.750 17.331 16.167 24.388 Atomic orbital electron populations 1.22445 0.99507 1.00745 0.99768 1.20231 0.91584 0.95624 0.86492 0.93568 1.22163 0.93590 1.02218 0.98930 1.21099 0.95304 0.79747 0.99967 0.87510 1.22183 1.01496 1.00190 0.98030 1.45754 1.15832 1.11792 1.61252 1.16668 0.82635 0.84007 0.78200 1.90847 1.51638 1.54539 1.43677 1.21949 0.93379 0.96028 1.06871 1.25299 1.00982 0.80236 1.00272 1.84337 1.36540 1.27595 1.59648 1.26136 0.80250 0.97224 0.97306 1.20456 1.00716 0.84457 0.95877 1.22509 1.02861 0.93673 0.96949 1.22497 0.98961 0.96736 0.97881 1.22383 0.98987 0.95979 0.98888 1.22251 0.98715 0.97473 0.97338 1.70771 1.31116 0.98371 1.18448 1.42393 1.77983 1.10525 1.05277 1.19160 1.36150 0.93630 0.87350 0.91589 1.24685 1.02352 0.95945 0.97900 1.69650 1.51089 1.08594 1.28734 0.86261 0.77732 0.78622 0.84043 1.21858 1.21836 1.20930 0.92953 0.93542 0.94688 0.90505 0.91981 0.91590 0.92535 0.93082 0.76279 0.75347 0.86513 0.90718 0.90324 0.90978 0.91007 0.91203 0.91286 0.90393 0.91209 0.78353 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.65 16 2 C 0.17 3.40 2.84 -67.93 -0.19 3.20 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 4 C -0.13 -2.10 4.29 -26.73 -0.11 -2.22 16 5 C 0.14 2.45 2.52 -67.93 -0.17 2.28 16 6 H 0.11 2.35 7.05 -51.93 -0.37 1.98 16 7 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 8 N -0.70 -11.62 4.44 -54.88 -0.24 -11.86 16 9 C 0.60 11.05 7.78 -12.53 -0.10 10.95 16 10 O -0.53 -11.46 16.55 5.26 0.09 -11.37 16 11 C -0.06 -0.98 6.99 -83.02 -0.58 -1.56 16 12 C 0.01 0.07 11.95 29.96 0.36 0.43 16 13 O -0.20 -2.39 10.55 6.53 0.07 -2.32 16 14 C 0.20 2.40 6.50 -13.08 -0.09 2.31 16 15 C 0.00 0.04 3.44 -90.65 -0.31 -0.28 16 16 C -0.12 -0.90 6.35 -25.07 -0.16 -1.06 16 17 C -0.12 -0.69 6.91 -24.74 -0.17 -0.86 16 18 C -0.12 -0.70 6.83 -25.08 -0.17 -0.88 16 19 C -0.12 -0.80 6.45 -25.61 -0.17 -0.96 16 20 N -0.46 -6.59 11.06 -7.65 -0.08 -6.67 16 21 N -0.72 -18.17 4.49 -53.42 -0.24 -18.41 16 22 C -0.23 -6.60 9.93 -15.06 -0.15 -6.75 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 26 Si 0.90 23.33 29.55 -169.99 -5.02 18.30 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.40 6.02 8.33 -40.82 -0.34 5.68 16 39 H 0.23 2.48 8.06 -52.48 -0.42 2.05 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.53 7.67 -51.93 -0.40 0.14 16 49 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 50 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -34.19 410.71 -8.45 -42.64 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -8.53 Total: 12.19 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.40 Total: -0.49 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: 0.16 Total: -65.14 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.16 Total: -13.69 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.19 -8.45 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.521 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds