Wall clock time and date at job start Tue Mar 31 2020 19:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46768 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00427 * 2 1 3 5 5 C 1.53001 * 109.46991 * 185.00337 * 4 2 1 6 6 H 1.09001 * 109.46817 * 304.99874 * 5 4 2 7 7 C 1.53002 * 109.47039 * 185.00031 * 5 4 2 8 8 N 1.46502 * 109.47487 * 64.99719 * 5 4 2 9 9 C 1.34772 * 120.00269 * 205.00009 * 8 5 4 10 10 O 1.21618 * 119.99565 * 0.02562 * 9 8 5 11 11 C 1.47416 * 120.00415 * 179.97438 * 9 8 5 12 12 C 1.36091 * 126.45460 * 179.97438 * 11 9 8 13 13 O 1.34247 * 106.95153 * 180.02562 * 12 11 9 14 14 C 1.34053 * 108.22943 * 0.02562 * 13 12 11 15 15 C 1.50698 * 125.37883 * 180.02562 * 14 13 12 16 16 C 1.54272 * 110.03357 * 57.12419 * 15 14 13 17 17 C 1.54894 * 104.19502 * 217.10541 * 16 15 14 18 18 C 1.54884 * 102.74803 * 37.94506 * 17 16 15 19 19 C 1.53878 * 110.03338 * 299.96023 * 15 14 13 20 20 N 1.29933 * 109.24350 * 359.97438 * 14 13 12 21 21 N 1.46498 * 109.46805 * 240.00589 * 2 1 3 22 22 C 1.36937 * 120.00128 * 85.00104 * 21 2 1 23 23 H 1.07997 * 120.00320 * 359.97438 * 22 21 2 24 24 C 1.38813 * 119.99969 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99903 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00134 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47123 * 89.99841 * 26 24 22 28 28 H 1.48498 * 109.46991 * 210.00016 * 26 24 22 29 29 H 1.48500 * 109.46937 * 329.99644 * 26 24 22 30 30 H 1.08994 * 109.47372 * 59.99930 * 1 2 3 31 31 H 1.09005 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46844 * 299.99484 * 1 2 3 33 33 H 1.08992 * 109.47483 * 64.99918 * 4 2 1 34 34 H 1.09004 * 109.46523 * 304.99569 * 4 2 1 35 35 H 1.08991 * 109.47472 * 59.99735 * 7 5 4 36 36 H 1.08998 * 109.47016 * 179.97438 * 7 5 4 37 37 H 1.08996 * 109.46765 * 299.99747 * 7 5 4 38 38 H 0.97002 * 119.99887 * 25.00241 * 8 5 4 39 39 H 1.08006 * 126.52112 * 0.04428 * 12 11 9 40 40 H 1.08993 * 110.01666 * 178.56558 * 15 14 13 41 41 H 1.08998 * 110.48264 * 335.78259 * 16 15 14 42 42 H 1.09002 * 110.48517 * 98.42925 * 16 15 14 43 43 H 1.09000 * 110.75386 * 279.62812 * 17 16 15 44 44 H 1.08999 * 110.91149 * 156.33396 * 17 16 15 45 45 H 1.08999 * 110.48523 * 203.37945 * 18 17 16 46 46 H 1.09000 * 110.60104 * 80.79059 * 18 17 16 47 47 H 1.09004 * 110.02710 * 238.57007 * 19 15 14 48 48 H 1.09002 * 110.03200 * 359.97438 * 19 15 14 49 49 H 0.97004 * 119.99866 * 264.99057 * 21 2 1 50 50 H 0.97006 * 119.99779 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3136 6 1 3.9955 -0.9921 0.3866 7 6 4.0853 -1.4383 2.4923 8 7 3.9480 0.7895 1.4924 9 6 5.1612 1.2137 1.0867 10 8 5.9377 0.4321 0.5717 11 6 5.5465 2.6252 1.2661 12 6 6.7307 3.1921 0.9075 13 8 6.6633 4.4886 1.2491 14 6 5.4649 4.7139 1.8058 15 6 4.9815 6.0420 2.3288 16 6 5.0362 7.1023 1.2096 17 6 5.4718 8.3992 1.9359 18 6 6.5001 7.8816 2.9721 19 6 5.9123 6.5375 3.4495 20 7 4.7854 3.6065 1.8223 21 7 2.0183 -0.6905 -1.1962 22 6 2.1491 -0.0073 -2.3758 23 1 1.8919 1.0405 -2.4243 24 6 2.6122 -0.6614 -3.5091 25 7 2.9261 -1.9383 -3.4499 26 14 2.7900 0.2704 -5.1184 27 1 4.1517 0.8564 -5.2032 28 1 2.5802 -0.6613 -6.2555 29 1 1.7791 1.3567 -5.1755 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7518 -1.7715 1.2055 34 1 1.6055 -0.2617 2.1369 35 1 3.8004 -2.4819 2.3593 36 1 5.1716 -1.3617 2.5379 37 1 3.6548 -1.0594 3.4191 38 1 3.3285 1.4129 1.9028 39 1 7.5655 2.6937 0.4372 40 1 3.9628 5.9466 2.7044 41 1 5.7710 6.8225 0.4547 42 1 4.0528 7.2304 0.7572 43 1 4.6227 8.8665 2.4345 44 1 5.9409 9.0955 1.2408 45 1 6.5850 8.5784 3.8060 46 1 7.4723 7.7280 2.5039 47 1 5.3450 6.6835 4.3687 48 1 6.7134 5.8172 3.6154 49 1 2.2491 -1.6317 -1.1527 50 1 3.2502 -2.3953 -4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135810506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:26 Heat of formation + Delta-G solvation = -52.307273 kcal Electronic energy + Delta-G solvation = -29463.805577 eV Core-core repulsion = 25490.916724 eV Total energy + Delta-G solvation = -3972.888853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55424 -40.80079 -38.99631 -38.34684 -36.13305 -35.95222 -34.01758 -32.55307 -31.78424 -30.43138 -29.66052 -29.08391 -27.62987 -25.78005 -25.45218 -23.49964 -22.64606 -21.84572 -21.52720 -21.20401 -20.72347 -19.38415 -18.98445 -17.89649 -17.70516 -17.24855 -16.74217 -16.64001 -16.29209 -15.94268 -15.69994 -15.51462 -15.12342 -14.84322 -14.59096 -14.49639 -14.28455 -14.26212 -13.63450 -13.39731 -13.20822 -12.97952 -12.89176 -12.82908 -12.67941 -12.55071 -12.31658 -12.20925 -12.20088 -12.03381 -11.98592 -11.93865 -11.84860 -11.70201 -11.58202 -11.45384 -11.43463 -11.27267 -10.93441 -10.21617 -9.94319 -8.96265 -7.93169 -5.18685 0.01843 0.91189 1.40471 1.43143 1.48459 1.50344 2.06864 2.25692 2.54733 2.72970 3.40637 3.56391 3.62597 3.63150 3.79947 3.82416 3.99351 4.04886 4.11276 4.37596 4.43271 4.44131 4.45927 4.51389 4.52497 4.53292 4.66430 4.72061 4.76612 4.79129 4.81472 4.90596 4.93706 4.95171 5.02341 5.07471 5.08272 5.20046 5.24072 5.28077 5.31668 5.32349 5.38647 5.48495 5.49311 5.57913 5.61747 6.28590 6.30134 6.59493 7.15569 7.35680 8.15119 8.36277 9.30462 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003127 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.005294 B = 8951.623742 C = 9944.257627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.035 0.965 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.052 0.948 7 C -0.150 4.150 8 N -0.687 5.687 9 C 0.594 3.406 10 O -0.575 6.575 11 C -0.094 4.094 12 C 0.017 3.983 13 O -0.191 6.191 14 C 0.210 3.790 15 C 0.002 3.998 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.116 4.116 20 N -0.476 5.476 21 N -0.730 5.730 22 C -0.227 4.227 23 H 0.065 0.935 24 C -0.077 4.077 25 N -0.967 5.967 26 Si 0.962 3.038 27 H -0.295 1.295 28 H -0.293 1.293 29 H -0.269 1.269 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.412 0.588 39 H 0.249 0.751 40 H 0.127 0.873 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.057 0.943 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 19.956 19.641 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.053 0.947 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.071 0.929 7 C -0.209 4.209 8 N -0.337 5.337 9 C 0.380 3.620 10 O -0.455 6.455 11 C -0.213 4.213 12 C -0.057 4.057 13 O -0.077 6.077 14 C 0.000 4.000 15 C -0.017 4.017 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.154 4.154 20 N -0.206 5.206 21 N -0.371 5.371 22 C -0.359 4.359 23 H 0.083 0.917 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.792 3.208 27 H -0.223 1.223 28 H -0.219 1.219 29 H -0.194 1.194 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.265 0.735 40 H 0.145 0.855 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.076 0.924 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.206 19.458 19.417 27.809 hybrid contribution 0.792 -0.320 -1.705 1.907 sum 4.998 19.138 17.711 26.551 Atomic orbital electron populations 1.22288 0.97510 1.01023 1.00634 1.20487 0.92811 0.94933 0.86172 0.94730 1.22081 0.92556 1.02516 0.98447 1.20968 0.95929 0.80242 0.98823 0.92932 1.22082 1.00483 1.00419 0.97868 1.45705 1.15540 1.11857 1.60610 1.17052 0.82599 0.84885 0.77480 1.90812 1.52891 1.56012 1.45807 1.21732 0.94860 0.95316 1.09350 1.25669 1.00698 0.80447 0.98878 1.84380 1.36799 1.26932 1.59542 1.26982 0.79583 0.97851 0.95568 1.20776 1.01524 0.82724 0.96692 1.22528 1.02671 0.94413 0.96525 1.22494 0.99417 0.95763 0.97779 1.22390 0.98570 0.95666 0.99408 1.22264 0.98213 0.97608 0.97359 1.70728 1.31582 0.98745 1.19513 1.42568 1.78249 1.10086 1.06157 1.19465 1.34258 0.93632 0.88577 0.91694 1.25432 1.03439 0.96886 1.01153 1.69799 1.52917 1.10017 1.29133 0.85303 0.77528 0.77701 0.80315 1.22283 1.21898 1.19431 0.95213 0.93538 0.90658 0.89881 0.87828 0.90539 0.94162 0.90182 0.75112 0.73519 0.85481 0.92203 0.90056 0.89589 0.90457 0.89571 0.91944 0.88650 0.92404 0.79678 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 9.49 71.98 0.68 -4.66 16 2 C 0.16 6.40 2.84 44.99 0.13 6.53 16 3 H 0.03 1.43 7.56 -2.38 -0.02 1.42 16 4 C -0.12 -3.59 4.29 30.59 0.13 -3.46 16 5 C 0.14 4.98 2.52 44.99 0.11 5.09 16 6 H 0.05 2.43 7.05 -2.39 -0.02 2.41 16 7 C -0.15 -4.20 9.48 71.98 0.68 -3.52 16 8 N -0.69 -22.99 4.44 -445.79 -1.98 -24.97 16 9 C 0.59 22.54 7.78 86.66 0.67 23.21 16 10 O -0.58 -26.15 16.55 -4.09 -0.07 -26.22 16 11 C -0.09 -3.00 6.99 40.40 0.28 -2.72 16 12 C 0.02 0.46 11.95 67.32 0.80 1.26 16 13 O -0.19 -4.54 10.55 0.45 0.00 -4.54 16 14 C 0.21 4.83 6.50 88.39 0.57 5.41 16 15 C 0.00 0.03 3.44 -10.81 -0.04 -0.01 16 16 C -0.12 -1.62 6.35 31.67 0.20 -1.42 16 17 C -0.12 -1.01 6.91 31.89 0.22 -0.79 16 18 C -0.12 -1.08 6.83 31.67 0.22 -0.86 16 19 C -0.12 -1.29 6.45 31.32 0.20 -1.09 16 20 N -0.48 -13.49 11.06 -293.03 -3.24 -16.73 16 21 N -0.73 -37.55 4.49 -322.93 -1.45 -39.00 16 22 C -0.23 -13.17 9.93 84.03 0.83 -12.34 16 23 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 25 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 26 Si 0.96 48.89 29.55 68.60 2.03 50.92 16 27 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 28 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 29 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.41 11.95 8.33 -92.71 -0.77 11.18 16 39 H 0.25 5.38 8.06 -2.91 -0.02 5.36 16 40 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 0.97 7.70 -2.39 -0.02 0.95 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.06 0.80 7.67 -2.39 -0.02 0.78 16 49 H 0.37 20.60 7.80 -92.71 -0.72 19.88 16 50 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -77.15 410.71 1.20 -75.95 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.55 Total: 39.68 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 6.18 Total: 6.47 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -6.39 Total: -142.26 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.76 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -77.15 1.20 -75.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.646 kcal (2) G-P(sol) polarization free energy of solvation -77.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds