Wall clock time and date at job start Tue Mar 31 2020 19:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 H 1.09002 * 109.47016 * 55.00506 * 5 4 2 7 7 C 1.53004 * 109.46978 * 174.99863 * 5 4 2 8 8 N 1.46500 * 109.47515 * 294.99964 * 5 4 2 9 9 C 1.34774 * 119.99721 * 155.00132 * 8 5 4 10 10 O 1.21612 * 120.00653 * 0.02562 * 9 8 5 11 11 C 1.47422 * 120.00014 * 179.97438 * 9 8 5 12 12 C 1.36087 * 126.45227 * 179.68889 * 11 9 8 13 13 O 1.34262 * 106.94825 * 179.84895 * 12 11 9 14 14 C 1.34049 * 108.22799 * 0.41834 * 13 12 11 15 15 C 1.50701 * 125.37789 * 179.69921 * 14 13 12 16 16 C 1.54267 * 110.02988 * 57.21258 * 15 14 13 17 17 C 1.54893 * 104.19091 * 217.10591 * 16 15 14 18 18 C 1.54885 * 102.75196 * 37.94142 * 17 16 15 19 19 C 1.53874 * 110.03378 * 300.04493 * 15 14 13 20 20 N 1.29939 * 109.24181 * 359.73715 * 14 13 12 21 21 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 22 22 C 1.36933 * 119.99959 * 274.99729 * 21 2 1 23 23 H 1.07997 * 120.00399 * 0.02562 * 22 21 2 24 24 C 1.38821 * 119.99986 * 179.97438 * 22 21 2 25 25 N 1.31622 * 119.99626 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46634 * 60.00412 * 26 24 22 28 28 H 1.48501 * 109.46747 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47379 * 300.00354 * 26 24 22 30 30 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 31 31 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 32 32 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 34 34 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 35 35 H 1.09001 * 109.47356 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47210 * 300.00626 * 7 5 4 37 37 H 1.09007 * 109.46638 * 59.99986 * 7 5 4 38 38 H 0.96996 * 119.99912 * 335.00236 * 8 5 4 39 39 H 1.07994 * 126.52631 * 0.02562 * 12 11 9 40 40 H 1.08997 * 110.01294 * 178.65406 * 15 14 13 41 41 H 1.08994 * 110.48800 * 335.78174 * 16 15 14 42 42 H 1.08999 * 110.48596 * 98.43023 * 16 15 14 43 43 H 1.09002 * 110.75390 * 279.62306 * 17 16 15 44 44 H 1.09000 * 110.91453 * 156.33795 * 17 16 15 45 45 H 1.08997 * 110.48629 * 203.37583 * 18 17 16 46 46 H 1.09004 * 110.59357 * 80.79422 * 18 17 16 47 47 H 1.08996 * 110.03048 * 238.57230 * 19 15 14 48 48 H 1.09004 * 110.03261 * 0.02562 * 19 15 14 49 49 H 0.97007 * 119.99853 * 94.99634 * 21 2 1 50 50 H 0.96997 * 119.99546 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9953 -0.9923 -0.3869 7 6 4.0850 -1.4383 -2.4926 8 7 3.9479 0.7894 -1.4926 9 6 5.1611 1.2134 -1.0868 10 8 5.9380 0.4317 -0.5728 11 6 5.5470 2.6247 -1.2672 12 6 6.7288 3.1928 -0.9030 13 8 6.6641 4.4880 -1.2505 14 6 5.4657 4.7133 -1.8074 15 6 4.9827 6.0414 -2.3309 16 6 5.9551 6.5713 -3.4048 17 6 5.9872 8.1014 -3.1662 18 6 5.9355 8.2077 -1.6219 19 6 4.9702 7.0818 -1.1973 20 7 4.7861 3.6059 -1.8239 21 7 2.0183 -0.6906 1.1961 22 6 2.1491 -0.0075 2.3756 23 1 1.8920 1.0402 2.4243 24 6 2.6114 -0.6621 3.5092 25 7 2.9244 -1.9392 3.4500 26 14 2.7905 0.2699 5.1181 27 1 1.4685 0.8077 5.5284 28 1 3.2982 -0.6489 6.1685 29 1 3.7465 1.3916 4.9366 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0275 0.0005 33 1 1.7514 -1.7715 -1.2057 34 1 1.6052 -0.2617 -2.1370 35 1 5.1714 -1.3618 -2.5383 36 1 3.7999 -2.4820 -2.3596 37 1 3.6543 -1.0593 -3.4195 38 1 3.3284 1.4128 -1.9029 39 1 7.5614 2.6956 -0.4277 40 1 3.9826 5.9352 -2.7512 41 1 6.9475 6.1427 -3.2658 42 1 5.5788 6.3488 -4.4033 43 1 5.1175 8.5808 -3.6157 44 1 6.9089 8.5363 -3.5528 45 1 5.5450 9.1793 -1.3192 46 1 6.9243 8.0446 -1.1930 47 1 3.9644 7.4812 -1.0681 48 1 5.3140 6.6263 -0.2686 49 1 2.2490 -1.6319 1.1525 50 1 3.2470 -2.3967 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135810507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:30 Heat of formation + Delta-G solvation = -28.045348 kcal Electronic energy + Delta-G solvation = -29466.156061 eV Core-core repulsion = 25494.319284 eV Total energy + Delta-G solvation = -3971.836777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.50750 -39.38021 -38.41674 -36.76861 -34.89541 -34.38099 -32.08569 -31.53453 -30.46479 -29.14325 -28.54040 -28.26522 -26.26914 -24.35763 -23.52079 -22.62168 -21.48707 -21.05671 -20.45613 -19.76597 -19.59540 -18.02980 -17.15315 -16.88196 -16.62127 -15.96886 -15.86545 -15.59044 -14.75954 -14.45732 -14.18358 -14.04908 -13.81623 -13.75575 -13.60559 -13.42596 -12.94630 -12.64344 -12.18740 -12.10396 -11.95349 -11.92349 -11.67612 -11.54108 -11.53432 -11.50022 -11.24787 -11.14913 -10.98536 -10.96484 -10.88083 -10.76826 -10.56209 -10.36019 -10.18750 -9.84308 -9.81371 -9.55071 -9.04609 -8.81428 -8.62174 -6.85610 -5.67029 -2.94471 1.13295 2.01235 2.46426 3.33552 3.49430 3.53650 3.54557 3.58482 3.72770 4.14467 4.17812 4.51594 4.67505 4.83994 4.87065 4.98569 5.04230 5.07657 5.16076 5.20967 5.24591 5.44890 5.45561 5.46799 5.52232 5.56426 5.61679 5.67146 5.69739 5.75583 5.75993 5.86524 5.92696 5.95400 6.00038 6.02987 6.09267 6.20796 6.35990 6.41174 6.50268 6.63822 6.76941 6.87993 6.99172 7.14781 7.40798 7.78100 7.89314 8.51421 8.53089 9.62717 10.20537 10.55150 11.55792 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.003136 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.644509 B = 8925.183544 C = 9938.924709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.696 5.696 9 C 0.601 3.399 10 O -0.531 6.531 11 C -0.062 4.062 12 C 0.006 3.994 13 O -0.195 6.195 14 C 0.200 3.800 15 C 0.004 3.996 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.121 4.121 20 N -0.457 5.457 21 N -0.720 5.720 22 C -0.232 4.232 23 H 0.066 0.934 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.288 1.288 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.402 0.598 39 H 0.230 0.770 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 17.518 -17.583 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.346 5.346 9 C 0.385 3.615 10 O -0.407 6.407 11 C -0.182 4.182 12 C -0.068 4.068 13 O -0.081 6.081 14 C -0.009 4.009 15 C -0.015 4.015 16 C -0.158 4.158 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.160 4.160 20 N -0.187 5.187 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.084 0.916 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.734 3.266 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.215 1.215 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.237 0.763 39 H 0.246 0.754 40 H 0.135 0.865 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.296 16.971 -17.297 24.804 hybrid contribution 0.471 0.351 1.193 1.330 sum 5.767 17.322 -16.104 24.344 Atomic orbital electron populations 1.22444 0.99514 1.00745 0.99765 1.20229 0.91578 0.95624 0.86497 0.93571 1.22164 0.93592 1.02218 0.98929 1.21098 0.95302 0.79749 0.99966 0.87511 1.22187 1.01496 1.00187 0.98029 1.45752 1.15837 1.11790 1.61250 1.16666 0.82633 0.84008 0.78190 1.90845 1.51616 1.54523 1.43720 1.21950 0.93468 0.96026 1.06781 1.25299 1.01022 0.80258 1.00209 1.84340 1.36497 1.27721 1.59570 1.26140 0.80197 0.97205 0.97376 1.20454 1.00628 0.84432 0.95974 1.22492 0.99331 0.95999 0.97995 1.22498 1.02280 0.95229 0.96075 1.22383 0.99768 0.98362 0.95719 1.22263 1.01043 0.95089 0.97585 1.70771 1.31096 0.98345 1.18502 1.42383 1.77992 1.10522 1.05262 1.19118 1.36286 0.93613 0.87364 0.91643 1.24685 1.02328 0.95945 0.97891 1.69638 1.51073 1.08573 1.28802 0.86333 0.77638 0.78684 0.83942 1.21435 1.21722 1.21466 0.92959 0.94689 0.93541 0.90507 0.91981 0.92532 0.91592 0.93082 0.76278 0.75351 0.86518 0.90811 0.90504 0.90982 0.91062 0.91148 0.91283 0.90260 0.91041 0.78350 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.65 16 2 C 0.17 3.40 2.84 -67.93 -0.19 3.21 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 4 C -0.13 -2.10 4.29 -26.73 -0.11 -2.22 16 5 C 0.14 2.45 2.52 -67.93 -0.17 2.28 16 6 H 0.11 2.35 7.05 -51.93 -0.37 1.98 16 7 C -0.16 -2.32 9.48 37.16 0.35 -1.97 16 8 N -0.70 -11.63 4.44 -54.88 -0.24 -11.87 16 9 C 0.60 11.06 7.78 -12.52 -0.10 10.96 16 10 O -0.53 -11.46 16.55 5.27 0.09 -11.37 16 11 C -0.06 -0.98 6.99 -83.02 -0.58 -1.57 16 12 C 0.01 0.07 11.95 29.96 0.36 0.43 16 13 O -0.20 -2.39 10.55 6.50 0.07 -2.32 16 14 C 0.20 2.40 6.50 -13.08 -0.09 2.31 16 15 C 0.00 0.04 3.44 -90.65 -0.31 -0.27 16 16 C -0.12 -0.79 6.35 -25.07 -0.16 -0.95 16 17 C -0.12 -0.65 6.91 -24.74 -0.17 -0.82 16 18 C -0.12 -0.75 6.83 -25.08 -0.17 -0.92 16 19 C -0.12 -0.92 6.45 -25.62 -0.17 -1.08 16 20 N -0.46 -6.60 11.06 -7.65 -0.08 -6.69 16 21 N -0.72 -18.18 4.49 -53.43 -0.24 -18.42 16 22 C -0.23 -6.63 9.93 -15.06 -0.15 -6.78 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.92 13.06 55.49 0.72 -28.20 16 26 Si 0.90 23.34 29.55 -169.99 -5.02 18.31 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.40 6.03 8.33 -40.82 -0.34 5.69 16 39 H 0.23 2.48 8.06 -52.49 -0.42 2.06 16 40 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 49 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 50 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 410.72 15.07 6.19 6.19 Total: -1.00 -34.16 410.72 -8.45 -42.61 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -8.53 Total: 12.26 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.40 Total: -0.51 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 0.16 Total: -65.17 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.16 Total: -13.69 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.16 -8.45 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.569 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds