Wall clock time and date at job start Tue Mar 31 2020 19:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 H 1.09002 * 109.47016 * 55.00506 * 5 4 2 7 7 C 1.53004 * 109.46978 * 174.99863 * 5 4 2 8 8 N 1.46500 * 109.47515 * 294.99964 * 5 4 2 9 9 C 1.34774 * 119.99721 * 155.00132 * 8 5 4 10 10 O 1.21612 * 120.00653 * 0.02562 * 9 8 5 11 11 C 1.47422 * 120.00014 * 179.97438 * 9 8 5 12 12 C 1.36087 * 126.45227 * 179.68889 * 11 9 8 13 13 O 1.34262 * 106.94825 * 179.84895 * 12 11 9 14 14 C 1.34049 * 108.22799 * 0.41834 * 13 12 11 15 15 C 1.50701 * 125.37789 * 179.69921 * 14 13 12 16 16 C 1.54267 * 110.02988 * 57.21258 * 15 14 13 17 17 C 1.54893 * 104.19091 * 217.10591 * 16 15 14 18 18 C 1.54885 * 102.75196 * 37.94142 * 17 16 15 19 19 C 1.53874 * 110.03378 * 300.04493 * 15 14 13 20 20 N 1.29939 * 109.24181 * 359.73715 * 14 13 12 21 21 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 22 22 C 1.36933 * 119.99959 * 274.99729 * 21 2 1 23 23 H 1.07997 * 120.00399 * 0.02562 * 22 21 2 24 24 C 1.38821 * 119.99986 * 179.97438 * 22 21 2 25 25 N 1.31622 * 119.99626 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46634 * 60.00412 * 26 24 22 28 28 H 1.48501 * 109.46747 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47379 * 300.00354 * 26 24 22 30 30 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 31 31 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 32 32 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 34 34 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 35 35 H 1.09001 * 109.47356 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47210 * 300.00626 * 7 5 4 37 37 H 1.09007 * 109.46638 * 59.99986 * 7 5 4 38 38 H 0.96996 * 119.99912 * 335.00236 * 8 5 4 39 39 H 1.07994 * 126.52631 * 0.02562 * 12 11 9 40 40 H 1.08997 * 110.01294 * 178.65406 * 15 14 13 41 41 H 1.08994 * 110.48800 * 335.78174 * 16 15 14 42 42 H 1.08999 * 110.48596 * 98.43023 * 16 15 14 43 43 H 1.09002 * 110.75390 * 279.62306 * 17 16 15 44 44 H 1.09000 * 110.91453 * 156.33795 * 17 16 15 45 45 H 1.08997 * 110.48629 * 203.37583 * 18 17 16 46 46 H 1.09004 * 110.59357 * 80.79422 * 18 17 16 47 47 H 1.08996 * 110.03048 * 238.57230 * 19 15 14 48 48 H 1.09004 * 110.03261 * 0.02562 * 19 15 14 49 49 H 0.97007 * 119.99853 * 94.99634 * 21 2 1 50 50 H 0.96997 * 119.99546 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9953 -0.9923 -0.3869 7 6 4.0850 -1.4383 -2.4926 8 7 3.9479 0.7894 -1.4926 9 6 5.1611 1.2134 -1.0868 10 8 5.9380 0.4317 -0.5728 11 6 5.5470 2.6247 -1.2672 12 6 6.7288 3.1928 -0.9030 13 8 6.6641 4.4880 -1.2505 14 6 5.4657 4.7133 -1.8074 15 6 4.9827 6.0414 -2.3309 16 6 5.9551 6.5713 -3.4048 17 6 5.9872 8.1014 -3.1662 18 6 5.9355 8.2077 -1.6219 19 6 4.9702 7.0818 -1.1973 20 7 4.7861 3.6059 -1.8239 21 7 2.0183 -0.6906 1.1961 22 6 2.1491 -0.0075 2.3756 23 1 1.8920 1.0402 2.4243 24 6 2.6114 -0.6621 3.5092 25 7 2.9244 -1.9392 3.4500 26 14 2.7905 0.2699 5.1181 27 1 1.4685 0.8077 5.5284 28 1 3.2982 -0.6489 6.1685 29 1 3.7465 1.3916 4.9366 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0275 0.0005 33 1 1.7514 -1.7715 -1.2057 34 1 1.6052 -0.2617 -2.1370 35 1 5.1714 -1.3618 -2.5383 36 1 3.7999 -2.4820 -2.3596 37 1 3.6543 -1.0593 -3.4195 38 1 3.3284 1.4128 -1.9029 39 1 7.5614 2.6956 -0.4277 40 1 3.9826 5.9352 -2.7512 41 1 6.9475 6.1427 -3.2658 42 1 5.5788 6.3488 -4.4033 43 1 5.1175 8.5808 -3.6157 44 1 6.9089 8.5363 -3.5528 45 1 5.5450 9.1793 -1.3192 46 1 6.9243 8.0446 -1.1930 47 1 3.9644 7.4812 -1.0681 48 1 5.3140 6.6263 -0.2686 49 1 2.2490 -1.6319 1.1525 50 1 3.2470 -2.3967 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135810507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:29 Heat of formation + Delta-G solvation = -52.224703 kcal Electronic energy + Delta-G solvation = -29467.204556 eV Core-core repulsion = 25494.319284 eV Total energy + Delta-G solvation = -3972.885273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.55357 -40.80134 -38.99803 -38.34696 -36.13289 -35.95195 -34.01769 -32.55315 -31.78427 -30.43133 -29.66242 -29.08493 -27.62937 -25.77825 -25.45138 -23.50156 -22.64479 -21.84423 -21.52623 -21.20418 -20.72698 -19.38402 -18.98449 -17.90628 -17.69377 -17.25050 -16.73269 -16.65742 -16.29379 -15.93396 -15.69855 -15.51795 -15.12220 -14.85742 -14.58250 -14.48998 -14.28952 -14.26348 -13.63453 -13.39833 -13.20768 -12.96473 -12.88623 -12.80758 -12.68579 -12.55989 -12.31314 -12.24757 -12.21353 -12.03863 -11.98664 -11.93452 -11.84685 -11.69251 -11.58151 -11.45520 -11.44441 -11.27270 -10.92350 -10.21640 -9.94350 -8.96291 -7.93028 -5.18561 0.01769 0.91154 1.40446 1.43843 1.48409 1.49403 2.06899 2.25621 2.54800 2.72864 3.40517 3.56398 3.62452 3.63142 3.79956 3.82424 3.99375 4.04535 4.11247 4.37613 4.43009 4.44053 4.46317 4.51358 4.52068 4.53538 4.66428 4.71047 4.76624 4.79706 4.81481 4.90520 4.93724 4.95132 5.02323 5.07463 5.08182 5.20041 5.24160 5.28212 5.31460 5.32104 5.38616 5.48231 5.49203 5.57859 5.61696 6.28548 6.30149 6.59464 7.15525 7.35690 8.15220 8.36433 9.30422 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.003136 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.644509 B = 8925.183544 C = 9938.924709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.052 0.948 7 C -0.150 4.150 8 N -0.687 5.687 9 C 0.594 3.406 10 O -0.575 6.575 11 C -0.094 4.094 12 C 0.017 3.983 13 O -0.191 6.191 14 C 0.210 3.790 15 C 0.002 3.998 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.122 4.122 20 N -0.476 5.476 21 N -0.730 5.730 22 C -0.229 4.229 23 H 0.065 0.935 24 C -0.077 4.077 25 N -0.967 5.967 26 Si 0.962 3.038 27 H -0.276 1.276 28 H -0.294 1.294 29 H -0.287 1.287 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.412 0.588 39 H 0.249 0.751 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 19.910 -19.636 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.053 0.947 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.071 0.929 7 C -0.209 4.209 8 N -0.337 5.337 9 C 0.380 3.620 10 O -0.455 6.455 11 C -0.213 4.213 12 C -0.057 4.057 13 O -0.077 6.077 14 C 0.000 4.000 15 C -0.017 4.017 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.160 4.160 20 N -0.206 5.206 21 N -0.370 5.370 22 C -0.361 4.361 23 H 0.083 0.917 24 C -0.269 4.269 25 N -0.618 5.618 26 Si 0.792 3.208 27 H -0.202 1.202 28 H -0.220 1.220 29 H -0.214 1.214 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.265 0.735 40 H 0.145 0.855 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.081 0.919 47 H 0.109 0.891 48 H 0.069 0.931 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.284 19.407 -19.403 27.775 hybrid contribution 0.748 -0.291 1.751 1.926 sum 5.032 19.116 -17.652 26.501 Atomic orbital electron populations 1.22287 0.97520 1.01021 1.00630 1.20484 0.92803 0.94927 0.86185 0.94749 1.22082 0.92562 1.02517 0.98439 1.20968 0.95925 0.80240 0.98828 0.92929 1.22086 1.00486 1.00416 0.97863 1.45703 1.15543 1.11859 1.60608 1.17051 0.82601 0.84884 0.77476 1.90809 1.52864 1.55991 1.45841 1.21735 0.94948 0.95320 1.09254 1.25669 1.00737 0.80467 0.98834 1.84382 1.36759 1.27059 1.59463 1.26984 0.79532 0.97827 0.95636 1.20776 1.01504 0.82689 0.96737 1.22503 0.98247 0.96944 0.97860 1.22495 1.03427 0.94100 0.95370 1.22390 0.99024 0.98285 0.96395 1.22288 1.02141 0.95254 0.96329 1.70728 1.31554 0.98724 1.19572 1.42556 1.78270 1.10080 1.06137 1.19431 1.34438 0.93640 0.88605 0.91729 1.25435 1.03394 0.96885 1.01150 1.69791 1.52891 1.09986 1.29169 0.85370 0.77870 0.77327 0.80215 1.20165 1.22013 1.21378 0.95224 0.90656 0.93540 0.89879 0.87828 0.94155 0.90537 0.90181 0.75116 0.73521 0.85452 0.91832 0.89355 0.89621 0.90131 0.89887 0.91944 0.89084 0.93069 0.79674 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.49 71.98 0.68 -4.67 16 2 C 0.16 6.41 2.84 44.99 0.13 6.54 16 3 H 0.03 1.43 7.56 -2.39 -0.02 1.41 16 4 C -0.12 -3.59 4.29 30.60 0.13 -3.46 16 5 C 0.14 4.98 2.52 44.99 0.11 5.09 16 6 H 0.05 2.43 7.05 -2.39 -0.02 2.41 16 7 C -0.15 -4.20 9.48 71.98 0.68 -3.52 16 8 N -0.69 -23.02 4.44 -445.80 -1.98 -25.00 16 9 C 0.59 22.57 7.78 86.66 0.67 23.24 16 10 O -0.57 -26.15 16.55 -4.07 -0.07 -26.21 16 11 C -0.09 -3.01 6.99 40.41 0.28 -2.72 16 12 C 0.02 0.46 11.95 67.32 0.80 1.26 16 13 O -0.19 -4.56 10.55 0.34 0.00 -4.55 16 14 C 0.21 4.85 6.50 88.39 0.57 5.42 16 15 C 0.00 0.03 3.44 -10.82 -0.04 0.00 16 16 C -0.12 -1.29 6.35 31.67 0.20 -1.09 16 17 C -0.12 -0.90 6.91 31.89 0.22 -0.67 16 18 C -0.12 -1.22 6.83 31.67 0.22 -1.00 16 19 C -0.12 -1.63 6.45 31.32 0.20 -1.43 16 20 N -0.48 -13.52 11.06 -293.03 -3.24 -16.76 16 21 N -0.73 -37.58 4.49 -322.94 -1.45 -39.03 16 22 C -0.23 -13.30 9.93 84.04 0.83 -12.46 16 23 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 24 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 25 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 26 Si 0.96 48.91 29.55 68.60 2.03 50.94 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 29 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.41 11.97 8.33 -92.71 -0.77 11.20 16 39 H 0.25 5.39 8.06 -2.91 -0.02 5.37 16 40 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 0.84 7.71 -2.39 -0.02 0.82 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 0.90 7.67 -2.38 -0.02 0.88 16 49 H 0.37 20.62 7.80 -92.70 -0.72 19.90 16 50 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.14 410.72 1.20 -75.94 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.55 Total: 39.85 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.18 Total: 6.37 kcal Atomic # 7 Polarization: -135.95 SS G_CDS: -6.39 Total: -142.34 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.06 Total: -30.77 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -77.14 1.20 -75.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.716 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds