Wall clock time and date at job start Tue Mar 31 2020 19:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47476 * 2 1 4 4 O 1.42896 * 109.47331 * 120.00331 * 2 1 3 5 5 C 1.35671 * 117.00226 * 89.99494 * 4 2 1 6 6 C 1.39288 * 119.61880 * 179.97438 * 5 4 2 7 7 C 1.38325 * 119.30498 * 180.02562 * 6 5 4 8 8 C 1.38782 * 118.56123 * 0.02562 * 7 6 5 9 9 C 1.39124 * 119.18683 * 359.97438 * 8 7 6 10 10 C 1.48150 * 119.69138 * 179.97438 * 9 8 7 11 11 O 1.21522 * 119.99974 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99630 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47395 * 34.99808 * 13 12 10 15 15 C 1.53002 * 109.46959 * 274.99334 * 13 12 10 16 16 C 1.53003 * 109.47138 * 154.99830 * 13 12 10 17 17 C 1.52997 * 109.46992 * 294.99861 * 16 13 12 18 18 H 1.09001 * 109.46922 * 54.99919 * 17 16 13 19 19 C 1.53006 * 109.47164 * 174.99670 * 17 16 13 20 20 N 1.46496 * 109.47194 * 294.99585 * 17 16 13 21 21 C 1.36940 * 120.00276 * 154.99852 * 20 17 16 22 22 H 1.08002 * 119.99359 * 0.02562 * 21 20 17 23 23 C 1.38803 * 120.00232 * 180.02562 * 21 20 17 24 24 N 1.31619 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47036 * 90.00177 * 25 23 21 27 27 H 1.48506 * 109.47163 * 210.00333 * 25 23 21 28 28 H 1.48504 * 109.46937 * 329.99803 * 25 23 21 29 29 N 1.31899 * 119.61693 * 0.26146 * 5 4 2 30 30 H 1.09004 * 109.46948 * 59.99610 * 1 2 3 31 31 H 1.09001 * 109.46744 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46868 * 300.00065 * 1 2 3 33 33 H 1.09004 * 109.46868 * 239.99935 * 2 1 3 34 34 H 1.08995 * 109.47593 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46955 * 300.00478 * 3 2 1 36 36 H 1.09004 * 109.47125 * 60.00092 * 3 2 1 37 37 H 1.08007 * 120.34522 * 0.03244 * 6 5 4 38 38 H 1.08002 * 120.71890 * 179.97438 * 7 6 5 39 39 H 1.07993 * 120.40489 * 180.02562 * 8 7 6 40 40 H 0.96990 * 120.00138 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.46671 * 60.00842 * 15 13 12 42 42 H 1.09005 * 109.46890 * 179.97438 * 15 13 12 43 43 H 1.08990 * 109.47447 * 300.00815 * 15 13 12 44 44 H 1.09002 * 109.47471 * 174.99604 * 16 13 12 45 45 H 1.09006 * 109.46544 * 54.99764 * 16 13 12 46 46 H 1.09001 * 109.47002 * 59.99738 * 19 17 16 47 47 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 48 48 H 1.09000 * 109.47050 * 300.00004 * 19 17 16 49 49 H 0.97003 * 119.99825 * 335.00349 * 20 17 16 50 50 H 0.96996 * 120.00427 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2116 -2.0109 1.0652 6 6 2.6760 -2.7219 2.1693 7 6 2.8835 -4.0850 2.0584 8 6 2.6202 -4.6995 0.8422 9 6 2.1581 -3.9299 -0.2207 10 6 1.8739 -4.5743 -1.5242 11 8 2.0443 -5.7697 -1.6610 12 7 1.4265 -3.8347 -2.5582 13 6 1.1450 -4.4721 -3.8470 14 1 0.7489 -5.4734 -3.6783 15 6 2.4361 -4.5650 -4.6627 16 6 0.1161 -3.6390 -4.6140 17 6 -1.2141 -3.6495 -3.8582 18 1 -1.0536 -3.3080 -2.8356 19 6 -2.2054 -2.7172 -4.5576 20 7 -1.7543 -5.0111 -3.8393 21 6 -2.6138 -5.3930 -2.8440 22 1 -2.8937 -4.6902 -2.0732 23 6 -3.1253 -6.6832 -2.8258 24 7 -2.7838 -7.5399 -3.7649 25 14 -4.2983 -7.2039 -1.4684 26 1 -5.6951 -6.9224 -1.8864 27 1 -4.1423 -8.6580 -1.2102 28 1 -3.9897 -6.4454 -0.2296 29 7 1.9745 -2.6217 -0.0796 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 2.8719 -2.2142 3.1022 38 1 3.2434 -4.6585 2.8998 39 1 2.7714 -5.7621 0.7226 40 1 1.2902 -2.8806 -2.4490 41 1 3.1691 -5.1586 -4.1163 42 1 2.2268 -5.0397 -5.6214 43 1 2.8323 -3.5638 -4.8313 44 1 -0.0272 -4.0636 -5.6077 45 1 0.4742 -2.6135 -4.7052 46 1 -2.3658 -3.0586 -5.5802 47 1 -3.1529 -2.7243 -4.0189 48 1 -1.8035 -1.7041 -4.5716 49 1 -1.5031 -5.6421 -4.5319 50 1 -3.1409 -8.4416 -3.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135810824.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:16 Heat of formation + Delta-G solvation = -39.156274 kcal Electronic energy + Delta-G solvation = -30154.018704 eV Core-core repulsion = 26181.700121 eV Total energy + Delta-G solvation = -3972.318583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96389 -39.46712 -38.14412 -36.72760 -34.45320 -33.47548 -32.89892 -32.01291 -30.76504 -30.01999 -28.55040 -27.45016 -26.29965 -25.04223 -23.70408 -23.52555 -21.56201 -21.31641 -20.37713 -19.65634 -18.68085 -17.67630 -17.09116 -16.17542 -16.02172 -15.83444 -15.69390 -14.88273 -14.72395 -14.58548 -14.18259 -13.92720 -13.86167 -13.66938 -13.39166 -13.21690 -12.92399 -12.68094 -12.53207 -12.48947 -12.22296 -12.13446 -12.04714 -11.92859 -11.69977 -11.56739 -11.12118 -11.03370 -10.93796 -10.79911 -10.58156 -10.39610 -10.25231 -10.17982 -10.09912 -9.85311 -9.57338 -9.49577 -8.83321 -8.74631 -8.57493 -6.87208 -5.68510 -2.96153 0.61107 1.13766 2.80529 2.92485 3.32471 3.48054 3.53334 3.54928 3.87684 4.00100 4.64325 4.66304 4.73844 4.78313 4.86517 4.86951 5.04644 5.08889 5.16591 5.35691 5.35830 5.44713 5.51137 5.53721 5.61351 5.65950 5.66390 5.73097 5.78989 5.89656 5.92847 5.97922 6.00427 6.05825 6.07381 6.18022 6.23910 6.33261 6.38748 6.47386 6.60808 6.74341 6.85019 6.96003 7.08050 7.12026 7.49934 7.76958 7.88293 8.49543 8.50766 9.61364 10.18773 10.53220 11.54305 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009322 B = 0.003823 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.034338 B = 7321.840082 C = 7615.896179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 C -0.150 4.150 4 O -0.302 6.302 5 C 0.323 3.677 6 C -0.174 4.174 7 C -0.047 4.047 8 C -0.151 4.151 9 C 0.130 3.870 10 C 0.569 3.431 11 O -0.522 6.522 12 N -0.694 5.694 13 C 0.141 3.859 14 H 0.107 0.893 15 C -0.160 4.160 16 C -0.130 4.130 17 C 0.171 3.829 18 H 0.046 0.954 19 C -0.164 4.164 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.284 1.284 29 N -0.517 5.517 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.403 0.597 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.139 16.226 7.224 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.210 6.210 5 C 0.141 3.859 6 C -0.195 4.195 7 C -0.072 4.072 8 C -0.172 4.172 9 C -0.007 4.007 10 C 0.352 3.648 11 O -0.397 6.397 12 N -0.344 5.344 13 C 0.037 3.963 14 H 0.125 0.875 15 C -0.219 4.219 16 C -0.169 4.169 17 C 0.061 3.939 18 H 0.064 0.936 19 C -0.225 4.225 20 N -0.362 5.362 21 C -0.364 4.364 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.733 3.267 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.210 1.210 29 N -0.243 5.243 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.238 0.762 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.880 15.992 6.729 22.219 hybrid contribution -0.636 -0.494 1.125 1.384 sum 13.244 15.498 7.854 21.846 Atomic orbital electron populations 1.22238 0.94513 1.03425 1.02666 1.22366 0.94641 0.92641 0.87834 1.21905 1.01795 0.93961 1.03035 1.86291 1.80221 1.15649 1.38824 1.19698 0.91893 0.84781 0.89484 1.21247 1.04955 0.94447 0.98876 1.21433 0.94952 0.93376 0.97483 1.22022 1.00187 1.02471 0.92521 1.20958 0.96491 0.88030 0.95237 1.17759 0.78039 0.86203 0.82764 1.90820 1.52185 1.13885 1.82841 1.45800 1.65354 1.12031 1.11234 1.21116 0.94082 0.99626 0.81445 0.87475 1.22181 0.98089 1.01296 1.00312 1.22164 0.95850 0.99031 0.99838 1.20224 0.89858 0.87369 0.96441 0.93600 1.22448 1.01123 0.97827 1.01060 1.42389 1.54453 1.07761 1.31557 1.19145 1.18555 0.95452 1.03228 0.91620 1.24670 1.00998 0.96480 0.98580 1.69642 1.48250 1.05391 1.34721 0.86272 0.80990 0.77714 0.81731 1.21878 1.21794 1.20966 1.67094 1.20513 1.11454 1.25269 0.90855 0.91591 0.92083 0.89267 0.91954 0.90388 0.91711 0.83859 0.83458 0.83109 0.76242 0.92503 0.91590 0.93113 0.90516 0.92050 0.93539 0.92968 0.94754 0.78344 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.53 37.16 0.35 -1.37 16 2 C 0.08 0.81 3.11 -26.73 -0.08 0.72 16 3 C -0.15 -1.11 9.56 37.16 0.36 -0.75 16 4 O -0.30 -3.49 9.76 -18.71 -0.18 -3.68 16 5 C 0.32 4.02 7.46 -17.13 -0.13 3.89 16 6 C -0.17 -1.81 10.05 -39.16 -0.39 -2.20 16 7 C -0.05 -0.47 10.16 -39.35 -0.40 -0.87 16 8 C -0.15 -1.98 9.63 -39.05 -0.38 -2.35 16 9 C 0.13 1.97 6.75 -83.03 -0.56 1.41 16 10 C 0.57 10.08 7.78 -12.19 -0.09 9.99 16 11 O -0.52 -11.02 15.98 5.35 0.09 -10.94 16 12 N -0.69 -11.05 4.44 -54.65 -0.24 -11.29 16 13 C 0.14 2.35 2.52 -67.93 -0.17 2.18 16 14 H 0.11 2.30 7.05 -51.93 -0.37 1.93 16 15 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 16 C -0.13 -2.03 4.29 -26.73 -0.11 -2.14 16 17 C 0.17 3.30 2.84 -67.93 -0.19 3.11 16 18 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 19 C -0.16 -2.91 9.49 37.16 0.35 -2.56 16 20 N -0.72 -17.84 4.49 -53.43 -0.24 -18.08 16 21 C -0.23 -6.53 9.93 -15.06 -0.15 -6.68 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 25 Si 0.90 23.17 29.55 -169.99 -5.02 18.14 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 29 N -0.52 -7.10 7.82 -9.87 -0.08 -7.17 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.94 6.98 -51.93 -0.36 0.58 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.15 1.96 7.63 -52.49 -0.40 1.56 16 40 H 0.40 5.65 7.93 -40.82 -0.32 5.32 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 415.68 15.07 6.26 6.26 Total: -1.00 -33.25 415.68 -8.51 -41.76 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.47 Total: 12.84 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.34 Total: 0.05 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.16 Total: -64.45 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.10 Total: -14.62 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.25 -8.51 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810824.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.608 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds