Wall clock time and date at job start Tue Mar 31 2020 19:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47476 * 2 1 4 4 O 1.42896 * 109.47331 * 120.00331 * 2 1 3 5 5 C 1.35671 * 117.00226 * 89.99494 * 4 2 1 6 6 C 1.39288 * 119.61880 * 179.97438 * 5 4 2 7 7 C 1.38325 * 119.30498 * 180.02562 * 6 5 4 8 8 C 1.38782 * 118.56123 * 0.02562 * 7 6 5 9 9 C 1.39124 * 119.18683 * 359.97438 * 8 7 6 10 10 C 1.48150 * 119.69138 * 179.97438 * 9 8 7 11 11 O 1.21522 * 119.99974 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99630 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47395 * 34.99808 * 13 12 10 15 15 C 1.53002 * 109.46959 * 274.99334 * 13 12 10 16 16 C 1.53003 * 109.47138 * 154.99830 * 13 12 10 17 17 C 1.52997 * 109.46992 * 294.99861 * 16 13 12 18 18 H 1.09001 * 109.46922 * 54.99919 * 17 16 13 19 19 C 1.53006 * 109.47164 * 174.99670 * 17 16 13 20 20 N 1.46496 * 109.47194 * 294.99585 * 17 16 13 21 21 C 1.36940 * 120.00276 * 154.99852 * 20 17 16 22 22 H 1.08002 * 119.99359 * 0.02562 * 21 20 17 23 23 C 1.38803 * 120.00232 * 180.02562 * 21 20 17 24 24 N 1.31619 * 120.00338 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47036 * 90.00177 * 25 23 21 27 27 H 1.48506 * 109.47163 * 210.00333 * 25 23 21 28 28 H 1.48504 * 109.46937 * 329.99803 * 25 23 21 29 29 N 1.31899 * 119.61693 * 0.26146 * 5 4 2 30 30 H 1.09004 * 109.46948 * 59.99610 * 1 2 3 31 31 H 1.09001 * 109.46744 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46868 * 300.00065 * 1 2 3 33 33 H 1.09004 * 109.46868 * 239.99935 * 2 1 3 34 34 H 1.08995 * 109.47593 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46955 * 300.00478 * 3 2 1 36 36 H 1.09004 * 109.47125 * 60.00092 * 3 2 1 37 37 H 1.08007 * 120.34522 * 0.03244 * 6 5 4 38 38 H 1.08002 * 120.71890 * 179.97438 * 7 6 5 39 39 H 1.07993 * 120.40489 * 180.02562 * 8 7 6 40 40 H 0.96990 * 120.00138 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.46671 * 60.00842 * 15 13 12 42 42 H 1.09005 * 109.46890 * 179.97438 * 15 13 12 43 43 H 1.08990 * 109.47447 * 300.00815 * 15 13 12 44 44 H 1.09002 * 109.47471 * 174.99604 * 16 13 12 45 45 H 1.09006 * 109.46544 * 54.99764 * 16 13 12 46 46 H 1.09001 * 109.47002 * 59.99738 * 19 17 16 47 47 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 48 48 H 1.09000 * 109.47050 * 300.00004 * 19 17 16 49 49 H 0.97003 * 119.99825 * 335.00349 * 20 17 16 50 50 H 0.96996 * 120.00427 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2116 -2.0109 1.0652 6 6 2.6760 -2.7219 2.1693 7 6 2.8835 -4.0850 2.0584 8 6 2.6202 -4.6995 0.8422 9 6 2.1581 -3.9299 -0.2207 10 6 1.8739 -4.5743 -1.5242 11 8 2.0443 -5.7697 -1.6610 12 7 1.4265 -3.8347 -2.5582 13 6 1.1450 -4.4721 -3.8470 14 1 0.7489 -5.4734 -3.6783 15 6 2.4361 -4.5650 -4.6627 16 6 0.1161 -3.6390 -4.6140 17 6 -1.2141 -3.6495 -3.8582 18 1 -1.0536 -3.3080 -2.8356 19 6 -2.2054 -2.7172 -4.5576 20 7 -1.7543 -5.0111 -3.8393 21 6 -2.6138 -5.3930 -2.8440 22 1 -2.8937 -4.6902 -2.0732 23 6 -3.1253 -6.6832 -2.8258 24 7 -2.7838 -7.5399 -3.7649 25 14 -4.2983 -7.2039 -1.4684 26 1 -5.6951 -6.9224 -1.8864 27 1 -4.1423 -8.6580 -1.2102 28 1 -3.9897 -6.4454 -0.2296 29 7 1.9745 -2.6217 -0.0796 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 2.8719 -2.2142 3.1022 38 1 3.2434 -4.6585 2.8998 39 1 2.7714 -5.7621 0.7226 40 1 1.2902 -2.8806 -2.4490 41 1 3.1691 -5.1586 -4.1163 42 1 2.2268 -5.0397 -5.6214 43 1 2.8323 -3.5638 -4.8313 44 1 -0.0272 -4.0636 -5.6077 45 1 0.4742 -2.6135 -4.7052 46 1 -2.3658 -3.0586 -5.5802 47 1 -3.1529 -2.7243 -4.0189 48 1 -1.8035 -1.7041 -4.5716 49 1 -1.5031 -5.6421 -4.5319 50 1 -3.1409 -8.4416 -3.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135810824.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:15 Heat of formation + Delta-G solvation = -62.046780 kcal Electronic energy + Delta-G solvation = -30155.011310 eV Core-core repulsion = 26181.700121 eV Total energy + Delta-G solvation = -3973.311190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96288 -40.69481 -39.13111 -38.24049 -36.11227 -34.32972 -34.10358 -33.64386 -32.03756 -31.10631 -30.40350 -28.13520 -27.62412 -26.12157 -25.64674 -24.58013 -22.77658 -22.15431 -21.74215 -21.19006 -19.76670 -19.23146 -18.63807 -17.30026 -17.02688 -16.85272 -16.81553 -16.60302 -16.07737 -15.68137 -15.58936 -15.40835 -15.18960 -14.87722 -14.52072 -14.31923 -14.30979 -13.97003 -13.62667 -13.39489 -13.25580 -13.19481 -13.14118 -13.10962 -12.95236 -12.83222 -12.80760 -12.69272 -12.27820 -12.22092 -11.89477 -11.85838 -11.76404 -11.58601 -11.45441 -11.44444 -11.00339 -10.92604 -10.63258 -10.06685 -9.58719 -8.95446 -7.92676 -5.18022 -0.40935 0.22650 1.40843 1.43003 1.50216 1.72159 1.96002 2.11507 2.54995 2.79147 2.96386 3.41393 3.76210 3.85042 3.90237 3.97084 4.00769 4.01096 4.05930 4.11402 4.20881 4.30319 4.38674 4.46623 4.52734 4.67495 4.72417 4.77030 4.81981 4.85397 4.86648 4.90425 4.91734 4.97070 5.01883 5.08446 5.10088 5.21231 5.24341 5.29744 5.32573 5.39095 5.39807 5.49285 5.59363 5.62677 6.16220 6.30593 6.41770 6.69978 7.19694 7.36413 8.15980 8.36765 9.31001 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009322 B = 0.003823 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.034338 B = 7321.840082 C = 7615.896179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.076 3.924 3 C -0.144 4.144 4 O -0.305 6.305 5 C 0.307 3.693 6 C -0.161 4.161 7 C -0.034 4.034 8 C -0.160 4.160 9 C 0.100 3.900 10 C 0.561 3.439 11 O -0.571 6.571 12 N -0.684 5.684 13 C 0.143 3.857 14 H 0.052 0.948 15 C -0.150 4.150 16 C -0.117 4.117 17 C 0.165 3.835 18 H 0.035 0.965 19 C -0.154 4.154 20 N -0.730 5.730 21 C -0.227 4.227 22 H 0.064 0.936 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.960 3.040 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.277 1.277 29 N -0.523 5.523 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.177 0.823 38 H 0.189 0.811 39 H 0.143 0.857 40 H 0.413 0.587 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.044 0.956 47 H 0.028 0.972 48 H 0.075 0.925 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.028 19.317 8.408 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 C -0.201 4.201 4 O -0.212 6.212 5 C 0.126 3.874 6 C -0.182 4.182 7 C -0.059 4.059 8 C -0.182 4.182 9 C -0.036 4.036 10 C 0.346 3.654 11 O -0.450 6.450 12 N -0.334 5.334 13 C 0.039 3.961 14 H 0.070 0.930 15 C -0.208 4.208 16 C -0.156 4.156 17 C 0.057 3.943 18 H 0.053 0.947 19 C -0.214 4.214 20 N -0.371 5.371 21 C -0.359 4.359 22 H 0.082 0.918 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.790 3.210 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.203 1.203 29 N -0.250 5.250 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.194 0.806 38 H 0.206 0.794 39 H 0.161 0.839 40 H 0.250 0.750 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.094 0.906 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.768 19.174 7.909 25.462 hybrid contribution -0.866 -1.316 0.819 1.775 sum 13.902 17.858 8.728 24.256 Atomic orbital electron populations 1.22212 0.94782 1.01749 1.03710 1.22543 0.94473 0.93899 0.87107 1.21897 1.01932 0.92123 1.04104 1.86304 1.80260 1.15138 1.39541 1.20091 0.92257 0.85318 0.89777 1.21704 1.02674 0.94474 0.99328 1.21852 0.93407 0.93519 0.97147 1.22166 1.00275 1.02254 0.93486 1.20645 0.99363 0.88969 0.94578 1.18271 0.77283 0.85846 0.83989 1.90778 1.54457 1.15880 1.83842 1.45743 1.64483 1.12370 1.10838 1.20972 0.95696 0.97174 0.82306 0.93017 1.22077 0.96078 1.02848 0.99811 1.22078 0.93228 1.01255 0.98996 1.20483 0.92049 0.84939 0.96873 0.94670 1.22285 0.99468 0.99553 1.00105 1.42566 1.54162 1.09869 1.30458 1.19445 1.17812 0.95275 1.03355 0.91755 1.25392 1.03398 0.96888 1.01003 1.69790 1.50001 1.05387 1.36643 0.85332 0.79349 0.76806 0.79511 1.21101 1.22396 1.20257 1.66950 1.20900 1.10718 1.26409 0.89313 0.94492 0.91579 0.90093 0.91704 0.88672 0.91281 0.80583 0.79379 0.83886 0.75024 0.94217 0.90632 0.90150 0.90000 0.87798 0.93635 0.95258 0.90581 0.79697 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.53 71.98 0.69 -2.44 16 2 C 0.08 1.37 3.11 30.59 0.10 1.47 16 3 C -0.14 -1.75 9.56 71.98 0.69 -1.06 16 4 O -0.30 -6.49 9.76 -89.88 -0.88 -7.37 16 5 C 0.31 7.20 7.46 84.94 0.63 7.83 16 6 C -0.16 -2.89 10.05 22.54 0.23 -2.67 16 7 C -0.03 -0.61 10.16 22.42 0.23 -0.38 16 8 C -0.16 -4.20 9.63 22.61 0.22 -3.98 16 9 C 0.10 3.11 6.75 41.84 0.28 3.39 16 10 C 0.56 20.90 7.78 86.88 0.68 21.58 16 11 O -0.57 -25.87 15.98 -3.79 -0.06 -25.93 16 12 N -0.68 -22.23 4.44 -445.09 -1.98 -24.20 16 13 C 0.14 4.83 2.52 44.99 0.11 4.94 16 14 H 0.05 2.36 7.05 -2.39 -0.02 2.35 16 15 C -0.15 -4.11 9.48 71.98 0.68 -3.43 16 16 C -0.12 -3.49 4.29 30.59 0.13 -3.35 16 17 C 0.16 6.29 2.84 44.99 0.13 6.42 16 18 H 0.04 1.42 7.56 -2.39 -0.02 1.40 16 19 C -0.15 -5.19 9.49 71.98 0.68 -4.51 16 20 N -0.73 -37.14 4.49 -322.95 -1.45 -38.60 16 21 C -0.23 -13.05 9.93 84.03 0.83 -12.22 16 22 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.07 -4.48 5.50 84.86 0.47 -4.02 16 24 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 25 Si 0.96 48.75 29.55 68.60 2.03 50.78 16 26 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 28 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 29 N -0.52 -14.22 7.82 -298.20 -2.33 -16.55 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.08 1.60 6.98 -2.38 -0.02 1.58 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.14 3.90 7.63 -2.91 -0.02 3.88 16 40 H 0.41 11.44 7.93 -92.72 -0.74 10.71 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 45 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 46 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.37 20.43 7.80 -92.71 -0.72 19.71 16 50 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -76.93 415.68 1.86 -75.06 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -0.52 Total: 40.50 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.77 Total: 7.56 kcal Atomic # 7 Polarization: -135.14 SS G_CDS: -5.47 Total: -140.61 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.94 Total: -33.30 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -76.93 1.86 -75.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135810824.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.018 kcal (2) G-P(sol) polarization free energy of solvation -76.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds