Wall clock time and date at job start Tue Mar 31 2020 19:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 O 1.42900 * 109.46882 * 119.99894 * 2 1 3 5 5 C 1.35684 * 117.00400 * 150.00104 * 4 2 1 6 6 C 1.38893 * 119.62801 * 180.30201 * 5 4 2 7 7 C 1.39568 * 118.94376 * 180.26979 * 6 5 4 8 8 C 1.48164 * 120.89051 * 179.71106 * 7 6 5 9 9 O 1.21518 * 119.99995 * 359.71993 * 8 7 6 10 10 N 1.34777 * 120.00429 * 179.72710 * 8 7 6 11 11 C 1.46495 * 120.00230 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47062 * 324.99175 * 11 10 8 13 13 C 1.52999 * 109.47657 * 84.99077 * 11 10 8 14 14 C 1.53002 * 109.47317 * 204.99663 * 11 10 8 15 15 C 1.53003 * 109.47269 * 64.99221 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.39968 * 118.22181 * 359.43909 * 7 6 5 28 28 C 1.37973 * 119.13282 * 0.27285 * 27 7 6 29 29 N 1.31919 * 120.97537 * 0.02562 * 28 27 7 30 30 H 1.08998 * 109.47400 * 300.00505 * 1 2 3 31 31 H 1.09009 * 109.47055 * 60.00407 * 1 2 3 32 32 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47400 * 239.99495 * 2 1 3 34 34 H 1.08995 * 109.47246 * 299.99901 * 3 2 1 35 35 H 1.09002 * 109.46894 * 59.99700 * 3 2 1 36 36 H 1.08996 * 109.47299 * 179.97438 * 3 2 1 37 37 H 1.07997 * 120.52431 * 359.97438 * 6 5 4 38 38 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47265 * 179.97438 * 13 11 10 40 40 H 1.08991 * 109.47415 * 300.00577 * 13 11 10 41 41 H 1.09005 * 109.46583 * 60.00443 * 13 11 10 42 42 H 1.09000 * 109.46766 * 304.99737 * 14 11 10 43 43 H 1.08992 * 109.47398 * 184.99831 * 14 11 10 44 44 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 45 45 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 46 46 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 47 47 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 48 48 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 49 49 H 1.07993 * 120.43410 * 180.24754 * 27 7 6 50 50 H 1.07998 * 119.51347 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1987 -1.3130 1.0654 6 6 3.7100 -1.9907 2.1647 7 6 4.9405 -2.6387 2.0462 8 6 5.5291 -3.3690 3.1932 9 8 4.9419 -3.4052 4.2564 10 7 6.7159 -3.9932 3.0573 11 6 7.2976 -4.7157 4.1912 12 1 7.0568 -4.1932 5.1171 13 6 6.7238 -6.1331 4.2414 14 6 8.8170 -4.7861 4.0258 15 6 9.4042 -3.3752 4.1005 16 1 8.9156 -2.7389 3.3627 17 6 10.9055 -3.4316 3.8113 18 7 9.1854 -2.8257 5.4408 19 6 9.1386 -1.4697 5.6255 20 1 9.2626 -0.8053 4.7831 21 6 8.9255 -0.9490 6.8946 22 7 8.7739 -1.7587 7.9211 23 14 8.8540 0.9007 7.1453 24 1 7.4530 1.3676 6.9893 25 1 9.3381 1.2344 8.5090 26 1 9.7143 1.5705 6.1370 27 6 5.6008 -2.5851 0.8133 28 6 5.0197 -1.8948 -0.2305 29 7 3.8575 -1.2889 -0.0802 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.1664 -2.0119 3.0976 38 1 7.1845 -3.9645 2.2085 39 1 7.1570 -6.6708 5.0849 40 1 5.6414 -6.0830 4.3593 41 1 6.9646 -6.6556 3.3156 42 1 9.0571 -5.2288 3.0591 43 1 9.2411 -5.3988 4.8212 44 1 11.3940 -4.0680 4.5492 45 1 11.0683 -3.8406 2.8141 46 1 11.3238 -2.4265 3.8650 47 1 9.0736 -3.4224 6.1974 48 1 8.6254 -1.3948 8.8080 49 1 6.5529 -3.0773 0.6807 50 1 5.5240 -1.8491 -1.1844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135916720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:05 Heat of formation + Delta-G solvation = -38.038351 kcal Electronic energy + Delta-G solvation = -29303.887503 eV Core-core repulsion = 25331.617396 eV Total energy + Delta-G solvation = -3972.270106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97460 -39.60386 -38.19351 -36.82518 -34.52484 -33.53321 -32.92607 -32.06103 -30.73499 -30.02203 -28.58651 -27.52156 -26.35134 -25.13129 -23.59978 -23.49207 -22.30716 -20.99293 -20.33265 -19.74205 -18.82119 -17.38797 -17.12566 -16.53286 -15.89689 -15.86428 -15.60440 -14.90816 -14.83384 -14.59570 -14.32654 -13.99852 -13.92709 -13.79588 -13.65478 -13.28076 -13.01345 -12.72789 -12.57956 -12.57007 -12.19987 -12.14804 -12.09113 -11.99277 -11.73865 -11.61547 -11.19971 -11.05390 -11.02353 -10.80630 -10.61919 -10.44126 -10.21799 -10.09556 -9.98702 -9.89493 -9.60868 -9.59131 -8.85945 -8.78299 -8.67679 -6.90158 -5.70808 -2.98760 0.64744 0.99840 2.72447 3.01023 3.33519 3.47836 3.52622 3.54093 3.78457 4.07103 4.54445 4.61266 4.64613 4.71959 4.80860 4.85623 4.90501 5.01914 5.11650 5.27905 5.37946 5.44280 5.46570 5.49902 5.55313 5.58020 5.62133 5.65216 5.68525 5.84768 5.87407 5.92727 5.93785 5.96167 6.00694 6.11951 6.19360 6.28438 6.34539 6.43193 6.55919 6.67534 6.77750 6.90558 7.07395 7.10113 7.62046 7.68547 7.74558 8.39490 8.47603 9.59050 10.15941 10.50059 11.51897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.003229 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.874701 B = 8670.191211 C =10157.321675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.170 4.170 4 O -0.299 6.299 5 C 0.322 3.678 6 C -0.134 4.134 7 C -0.043 4.043 8 C 0.557 3.443 9 O -0.517 6.517 10 N -0.705 5.705 11 C 0.143 3.857 12 H 0.108 0.892 13 C -0.161 4.161 14 C -0.131 4.131 15 C 0.171 3.829 16 H 0.045 0.955 17 C -0.165 4.165 18 N -0.720 5.720 19 C -0.235 4.235 20 H 0.066 0.934 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.183 4.183 28 C 0.136 3.864 29 N -0.531 5.531 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.154 0.846 38 H 0.394 0.606 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.052 0.948 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.141 0.859 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 -4.020 -20.368 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.227 4.227 4 O -0.207 6.207 5 C 0.143 3.857 6 C -0.156 4.156 7 C -0.053 4.053 8 C 0.342 3.658 9 O -0.392 6.392 10 N -0.357 5.357 11 C 0.039 3.961 12 H 0.126 0.874 13 C -0.220 4.220 14 C -0.170 4.170 15 C 0.061 3.939 16 H 0.063 0.937 17 C -0.226 4.226 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.084 0.916 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.733 3.267 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.209 1.209 27 C -0.204 4.204 28 C -0.019 4.019 29 N -0.255 5.255 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.172 0.828 38 H 0.229 0.771 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.159 0.841 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.947 -3.392 -20.038 23.083 hybrid contribution 0.722 0.598 0.523 1.074 sum -10.224 -2.794 -19.515 22.207 Atomic orbital electron populations 1.21913 0.92895 1.03008 1.03012 1.22349 0.94423 0.92800 0.87895 1.22224 1.02286 0.95591 1.02605 1.86330 1.31413 1.64292 1.38621 1.19615 0.86341 0.90326 0.89432 1.21165 0.96171 0.98777 0.99456 1.20257 0.94112 0.96701 0.94257 1.17975 0.81722 0.79024 0.87101 1.90821 1.60908 1.60126 1.27392 1.45848 1.20813 1.53496 1.15494 1.21105 0.92463 0.91682 0.90803 0.87400 1.22187 1.01617 0.96571 1.01587 1.22181 0.93584 0.99413 1.01811 1.20227 0.92537 0.91447 0.89697 0.93701 1.22458 0.99994 1.01458 0.98650 1.42389 1.86344 1.04389 1.03059 1.19139 1.41279 0.83169 0.93031 0.91556 1.24689 1.02840 0.97376 0.95814 1.69643 1.56219 1.33050 0.99004 0.86274 0.77646 0.85819 0.76971 1.21762 1.21808 1.20902 1.22139 1.01925 1.03077 0.93260 1.22318 0.89572 0.91252 0.98787 1.67111 1.10676 1.23121 1.24599 0.91526 0.90529 0.91818 0.89271 0.91144 0.91872 0.91887 0.82832 0.77078 0.91536 0.92460 0.93064 0.91987 0.90423 0.93506 0.94723 0.92894 0.78326 0.93589 0.84109 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 2 C 0.08 0.80 3.11 -26.73 -0.08 0.72 16 3 C -0.17 -1.55 9.53 37.16 0.35 -1.20 16 4 O -0.30 -3.86 9.76 -18.76 -0.18 -4.05 16 5 C 0.32 4.35 7.45 -17.16 -0.13 4.22 16 6 C -0.13 -1.96 9.61 -38.84 -0.37 -2.34 16 7 C -0.04 -0.60 5.91 -104.68 -0.62 -1.22 16 8 C 0.56 9.33 7.76 -12.18 -0.09 9.23 16 9 O -0.52 -10.91 16.10 5.35 0.09 -10.83 16 10 N -0.71 -10.06 4.41 -54.65 -0.24 -10.30 16 11 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 12 H 0.11 2.26 7.05 -51.93 -0.37 1.89 16 13 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 14 C -0.13 -1.92 4.29 -26.73 -0.11 -2.04 16 15 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 16 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 17 C -0.17 -2.82 9.49 37.16 0.35 -2.47 16 18 N -0.72 -17.50 4.49 -53.42 -0.24 -17.74 16 19 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 23 Si 0.90 23.09 29.55 -169.99 -5.02 18.06 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 C -0.18 -1.93 9.61 -39.03 -0.38 -2.31 16 28 C 0.14 1.35 11.17 -17.61 -0.20 1.15 16 29 N -0.53 -6.39 8.61 -13.38 -0.12 -6.50 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.88 6.98 -51.93 -0.36 0.52 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.15 2.36 7.74 -52.49 -0.41 1.95 16 38 H 0.39 4.31 6.74 -40.82 -0.28 4.04 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.14 1.07 6.53 -52.49 -0.34 0.73 16 50 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 413.66 15.07 6.23 6.23 Total: -1.00 -34.16 413.66 -8.29 -42.45 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -8.35 Total: 11.32 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.18 Total: -0.86 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.13 Total: -62.33 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.10 Total: -14.88 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.16 -8.29 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135916720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.410 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds