Wall clock time and date at job start Tue Mar 31 2020 19:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 O 1.42900 * 109.46882 * 119.99894 * 2 1 3 5 5 C 1.35684 * 117.00400 * 150.00104 * 4 2 1 6 6 C 1.38893 * 119.62801 * 180.30201 * 5 4 2 7 7 C 1.39568 * 118.94376 * 180.26979 * 6 5 4 8 8 C 1.48164 * 120.89051 * 179.71106 * 7 6 5 9 9 O 1.21518 * 119.99995 * 359.71993 * 8 7 6 10 10 N 1.34777 * 120.00429 * 179.72710 * 8 7 6 11 11 C 1.46495 * 120.00230 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47062 * 324.99175 * 11 10 8 13 13 C 1.52999 * 109.47657 * 84.99077 * 11 10 8 14 14 C 1.53002 * 109.47317 * 204.99663 * 11 10 8 15 15 C 1.53003 * 109.47269 * 64.99221 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.39968 * 118.22181 * 359.43909 * 7 6 5 28 28 C 1.37973 * 119.13282 * 0.27285 * 27 7 6 29 29 N 1.31919 * 120.97537 * 0.02562 * 28 27 7 30 30 H 1.08998 * 109.47400 * 300.00505 * 1 2 3 31 31 H 1.09009 * 109.47055 * 60.00407 * 1 2 3 32 32 H 1.09001 * 109.47577 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47400 * 239.99495 * 2 1 3 34 34 H 1.08995 * 109.47246 * 299.99901 * 3 2 1 35 35 H 1.09002 * 109.46894 * 59.99700 * 3 2 1 36 36 H 1.08996 * 109.47299 * 179.97438 * 3 2 1 37 37 H 1.07997 * 120.52431 * 359.97438 * 6 5 4 38 38 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47265 * 179.97438 * 13 11 10 40 40 H 1.08991 * 109.47415 * 300.00577 * 13 11 10 41 41 H 1.09005 * 109.46583 * 60.00443 * 13 11 10 42 42 H 1.09000 * 109.46766 * 304.99737 * 14 11 10 43 43 H 1.08992 * 109.47398 * 184.99831 * 14 11 10 44 44 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 45 45 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 46 46 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 47 47 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 48 48 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 49 49 H 1.07993 * 120.43410 * 180.24754 * 27 7 6 50 50 H 1.07998 * 119.51347 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.1987 -1.3130 1.0654 6 6 3.7100 -1.9907 2.1647 7 6 4.9405 -2.6387 2.0462 8 6 5.5291 -3.3690 3.1932 9 8 4.9419 -3.4052 4.2564 10 7 6.7159 -3.9932 3.0573 11 6 7.2976 -4.7157 4.1912 12 1 7.0568 -4.1932 5.1171 13 6 6.7238 -6.1331 4.2414 14 6 8.8170 -4.7861 4.0258 15 6 9.4042 -3.3752 4.1005 16 1 8.9156 -2.7389 3.3627 17 6 10.9055 -3.4316 3.8113 18 7 9.1854 -2.8257 5.4408 19 6 9.1386 -1.4697 5.6255 20 1 9.2626 -0.8053 4.7831 21 6 8.9255 -0.9490 6.8946 22 7 8.7739 -1.7587 7.9211 23 14 8.8540 0.9007 7.1453 24 1 7.4530 1.3676 6.9893 25 1 9.3381 1.2344 8.5090 26 1 9.7143 1.5705 6.1370 27 6 5.6008 -2.5851 0.8133 28 6 5.0197 -1.8948 -0.2305 29 7 3.8575 -1.2889 -0.0802 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.1664 -2.0119 3.0976 38 1 7.1845 -3.9645 2.2085 39 1 7.1570 -6.6708 5.0849 40 1 5.6414 -6.0830 4.3593 41 1 6.9646 -6.6556 3.3156 42 1 9.0571 -5.2288 3.0591 43 1 9.2411 -5.3988 4.8212 44 1 11.3940 -4.0680 4.5492 45 1 11.0683 -3.8406 2.8141 46 1 11.3238 -2.4265 3.8650 47 1 9.0736 -3.4224 6.1974 48 1 8.6254 -1.3948 8.8080 49 1 6.5529 -3.0773 0.6807 50 1 5.5240 -1.8491 -1.1844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135916720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:04 Heat of formation + Delta-G solvation = -62.388673 kcal Electronic energy + Delta-G solvation = -29304.943412 eV Core-core repulsion = 25331.617396 eV Total energy + Delta-G solvation = -3973.326015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97179 -40.80651 -39.15797 -38.28496 -36.12968 -34.37336 -34.15591 -33.72730 -31.94981 -31.03700 -30.38916 -28.18742 -27.59233 -26.20958 -25.63225 -24.42973 -23.30682 -22.15861 -21.46829 -21.21233 -19.89278 -19.21343 -18.32412 -17.59617 -17.02749 -16.81987 -16.79475 -16.52791 -16.10032 -15.68541 -15.58967 -15.41567 -15.21695 -14.92702 -14.83365 -14.50682 -14.27159 -14.10134 -13.60523 -13.37991 -13.29664 -13.21441 -13.18031 -13.01836 -12.95743 -12.88370 -12.79777 -12.65083 -12.26498 -12.18766 -11.95505 -11.82038 -11.80456 -11.56231 -11.41246 -11.30787 -11.05976 -10.92050 -10.66767 -10.06511 -9.59460 -8.94128 -7.92505 -5.17113 -0.40583 0.07664 1.40597 1.43869 1.50026 1.75785 1.84234 2.22703 2.55439 2.76380 3.22811 3.42331 3.51520 3.81914 3.85734 3.88953 3.97761 4.01518 4.02263 4.04952 4.15596 4.26240 4.41022 4.55120 4.58599 4.67380 4.67619 4.72026 4.81030 4.81809 4.82683 4.84855 4.87033 4.95797 4.98400 5.06197 5.13310 5.18084 5.23617 5.24309 5.34498 5.36598 5.42530 5.50702 5.61094 5.67053 6.21447 6.31243 6.50887 6.70866 7.19056 7.36989 8.18392 8.36820 9.31349 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010077 B = 0.003229 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.874701 B = 8670.191211 C =10157.321675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 C -0.166 4.166 4 O -0.318 6.318 5 C 0.314 3.686 6 C -0.164 4.164 7 C -0.058 4.058 8 C 0.550 3.450 9 O -0.577 6.577 10 N -0.688 5.688 11 C 0.145 3.855 12 H 0.047 0.953 13 C -0.152 4.152 14 C -0.118 4.118 15 C 0.162 3.838 16 H 0.045 0.955 17 C -0.156 4.156 18 N -0.732 5.732 19 C -0.223 4.223 20 H 0.070 0.930 21 C -0.079 4.079 22 N -0.969 5.969 23 Si 0.958 3.042 24 H -0.299 1.299 25 H -0.295 1.295 26 H -0.266 1.266 27 C -0.168 4.168 28 C 0.146 3.854 29 N -0.530 5.530 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.127 0.873 38 H 0.415 0.585 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.080 0.920 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.247 0.753 49 H 0.179 0.821 50 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 -4.552 -24.827 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 C -0.223 4.223 4 O -0.226 6.226 5 C 0.136 3.864 6 C -0.186 4.186 7 C -0.069 4.069 8 C 0.337 3.663 9 O -0.456 6.456 10 N -0.340 5.340 11 C 0.041 3.959 12 H 0.065 0.935 13 C -0.210 4.210 14 C -0.156 4.156 15 C 0.054 3.946 16 H 0.063 0.937 17 C -0.216 4.216 18 N -0.372 5.372 19 C -0.355 4.355 20 H 0.088 0.912 21 C -0.271 4.271 22 N -0.620 5.620 23 Si 0.788 3.212 24 H -0.227 1.227 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.188 4.188 28 C -0.010 4.010 29 N -0.255 5.255 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.145 0.855 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.047 0.953 47 H 0.201 0.799 48 H 0.056 0.944 49 H 0.196 0.804 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.482 -3.930 -24.591 26.647 hybrid contribution 0.300 0.725 1.750 1.918 sum -9.182 -3.204 -22.841 24.825 Atomic orbital electron populations 1.21935 0.91201 1.03228 1.04058 1.22640 0.95761 0.92825 0.86935 1.22207 1.01153 0.95383 1.03549 1.86314 1.31395 1.64529 1.40408 1.19575 0.86785 0.90507 0.89515 1.21078 0.97184 1.00975 0.99318 1.20136 0.94427 0.97427 0.94876 1.18483 0.81953 0.78749 0.87116 1.90790 1.62592 1.62356 1.29906 1.45687 1.19948 1.52375 1.15977 1.20926 0.93713 0.92427 0.88876 0.93470 1.22092 1.00080 0.95143 1.03692 1.22099 0.91846 0.97038 1.04600 1.20565 0.94036 0.93469 0.86559 0.93718 1.22304 0.97808 1.00298 1.01165 1.42618 1.86272 1.03129 1.05206 1.19496 1.38269 0.85003 0.92751 0.91205 1.25412 1.04519 1.01084 0.96085 1.69790 1.58777 1.34433 0.99018 0.85356 0.77118 0.81747 0.76957 1.22738 1.22147 1.19086 1.22525 1.02691 1.02191 0.91398 1.23165 0.88497 0.89098 1.00218 1.67242 1.11478 1.23235 1.23526 0.91975 0.87923 0.92033 0.89091 0.88587 0.92519 0.93535 0.85457 0.74660 0.90995 0.94559 0.89491 0.86921 0.90373 0.94002 0.90160 0.95290 0.79856 0.94441 0.80362 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.56 71.98 0.69 -1.39 16 2 C 0.07 1.41 3.11 30.59 0.10 1.51 16 3 C -0.17 -2.89 9.53 71.98 0.69 -2.20 16 4 O -0.32 -8.52 9.76 -90.03 -0.88 -9.40 16 5 C 0.31 8.63 7.45 84.80 0.63 9.26 16 6 C -0.16 -5.10 9.61 22.75 0.22 -4.88 16 7 C -0.06 -1.63 5.91 -19.90 -0.12 -1.75 16 8 C 0.55 18.96 7.76 86.88 0.67 19.63 16 9 O -0.58 -26.35 16.10 -3.77 -0.06 -26.41 16 10 N -0.69 -18.69 4.41 -445.10 -1.96 -20.66 16 11 C 0.14 4.47 2.52 44.99 0.11 4.58 16 12 H 0.05 2.08 7.05 -2.38 -0.02 2.06 16 13 C -0.15 -3.84 9.48 71.98 0.68 -3.16 16 14 C -0.12 -3.10 4.29 30.60 0.13 -2.97 16 15 C 0.16 5.65 2.84 44.99 0.13 5.78 16 16 H 0.04 1.57 7.56 -2.39 -0.02 1.55 16 17 C -0.16 -4.83 9.49 71.98 0.68 -4.15 16 18 N -0.73 -35.95 4.49 -322.93 -1.45 -37.40 16 19 C -0.22 -12.51 9.93 84.04 0.83 -11.68 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 22 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 23 Si 0.96 48.64 29.55 68.60 2.03 50.67 16 24 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 25 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 27 C -0.17 -3.01 9.61 22.63 0.22 -2.79 16 28 C 0.15 2.34 11.17 84.62 0.94 3.29 16 29 N -0.53 -11.80 8.61 -309.14 -2.66 -14.47 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.68 6.98 -2.39 -0.02 1.67 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.13 4.49 7.74 -2.91 -0.02 4.46 16 38 H 0.41 7.49 6.74 -92.71 -0.63 6.87 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 47 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 48 H 0.25 15.41 8.31 -92.70 -0.77 14.64 16 49 H 0.18 1.74 6.53 -2.91 -0.02 1.72 16 50 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -81.67 413.66 1.97 -79.71 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.41 Total: 34.51 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 7.08 Total: 4.83 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -5.79 Total: -133.91 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.94 Total: -35.81 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -81.67 1.97 -79.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135916720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.317 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds