Wall clock time and date at job start Tue Mar 31 2020 19:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 O 1.42898 * 109.47207 * 119.99912 * 2 1 3 5 5 C 1.35644 * 117.00085 * 154.94218 * 4 2 1 6 6 C 1.39345 * 120.54159 * 5.54365 * 5 4 2 7 7 C 1.38305 * 118.44178 * 180.28335 * 6 5 4 8 8 C 1.38772 * 119.44223 * 359.46449 * 7 6 5 9 9 N 1.31374 * 121.06727 * 0.27747 * 8 7 6 10 10 C 1.32865 * 121.69618 * 359.97438 * 9 8 7 11 11 C 1.47823 * 119.78127 * 180.02562 * 10 9 8 12 12 O 1.21555 * 119.99890 * 180.02562 * 11 10 9 13 13 N 1.34781 * 120.00361 * 0.02562 * 11 10 9 14 14 C 1.46494 * 120.00216 * 179.97438 * 13 11 10 15 15 H 1.09008 * 109.47218 * 324.99925 * 14 13 11 16 16 C 1.52995 * 109.47508 * 84.99557 * 14 13 11 17 17 C 1.52995 * 109.47185 * 205.00195 * 14 13 11 18 18 C 1.53001 * 109.47353 * 64.99837 * 17 14 13 19 19 H 1.09003 * 109.47181 * 55.00463 * 18 17 14 20 20 C 1.52999 * 109.47209 * 175.00276 * 18 17 14 21 21 N 1.46493 * 109.46995 * 295.00182 * 18 17 14 22 22 C 1.36939 * 120.00186 * 155.00068 * 21 18 17 23 23 H 1.08003 * 119.99632 * 359.97438 * 22 21 18 24 24 C 1.38809 * 120.00149 * 179.97438 * 22 21 18 25 25 N 1.31616 * 120.00004 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00047 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47163 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47280 * 119.99889 * 26 24 22 29 29 H 1.48493 * 109.47217 * 240.00068 * 26 24 22 30 30 H 1.08993 * 109.47199 * 300.00117 * 1 2 3 31 31 H 1.09007 * 109.46857 * 59.99960 * 1 2 3 32 32 H 1.08994 * 109.47226 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47327 * 240.00116 * 2 1 3 34 34 H 1.09004 * 109.47242 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47386 * 299.99455 * 3 2 1 36 36 H 1.08992 * 109.47138 * 60.00450 * 3 2 1 37 37 H 1.07998 * 120.78203 * 0.02562 * 6 5 4 38 38 H 1.07999 * 120.28084 * 179.74309 * 7 6 5 39 39 H 1.07995 * 119.46504 * 180.25765 * 8 7 6 40 40 H 0.96997 * 119.99936 * 359.97438 * 13 11 10 41 41 H 1.08998 * 109.47473 * 179.97438 * 16 14 13 42 42 H 1.09000 * 109.47183 * 300.00456 * 16 14 13 43 43 H 1.09008 * 109.46580 * 59.99978 * 16 14 13 44 44 H 1.09002 * 109.47484 * 184.99783 * 17 14 13 45 45 H 1.09001 * 109.47037 * 304.99420 * 17 14 13 46 46 H 1.09000 * 109.47365 * 180.02562 * 20 18 17 47 47 H 1.09008 * 109.46918 * 300.00029 * 20 18 17 48 48 H 1.08999 * 109.47216 * 59.99643 * 20 18 17 49 49 H 0.97006 * 120.00362 * 334.99491 * 21 18 17 50 50 H 0.97009 * 119.99655 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2438 -1.2247 1.0976 6 6 4.0445 -1.0286 -0.0259 7 6 5.2966 -1.6155 -0.0530 8 6 5.7214 -2.3669 1.0336 9 7 4.9514 -2.5341 2.0849 10 6 3.7393 -1.9945 2.1553 11 6 2.9087 -2.2095 3.3591 12 8 1.7990 -1.7180 3.4275 13 7 3.3818 -2.9503 4.3808 14 6 2.5588 -3.1628 5.5740 15 1 1.9703 -2.2673 5.7738 16 6 1.6201 -4.3484 5.3417 17 6 3.4639 -3.4560 6.7722 18 6 4.3153 -2.2231 7.0820 19 1 3.6655 -1.3604 7.2291 20 6 5.1288 -2.4715 8.3538 21 7 5.2250 -1.9642 5.9633 22 6 5.7025 -0.6990 5.7477 23 1 5.4080 0.1081 6.4023 24 6 6.5648 -0.4538 4.6880 25 7 6.9232 -1.4372 3.8901 26 14 7.2156 1.2723 4.3936 27 1 6.6657 2.1909 5.4227 28 1 8.6980 1.2638 4.4797 29 1 6.8008 1.7343 3.0447 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.6940 -0.4357 -0.8577 38 1 5.9401 -1.4864 -0.9106 39 1 6.7006 -2.8219 1.0146 40 1 4.2671 -3.3427 4.3261 41 1 1.0082 -4.5068 6.2296 42 1 0.9753 -4.1395 4.4880 43 1 2.2086 -5.2440 5.1419 44 1 2.8508 -3.7013 7.6393 45 1 4.1154 -4.2980 6.5380 46 1 5.7350 -1.5930 8.5748 47 1 4.4519 -2.6642 9.1862 48 1 5.7786 -3.3342 8.2068 49 1 5.4892 -2.6890 5.3752 50 1 7.5262 -1.2658 3.1497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136069709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:31 Heat of formation + Delta-G solvation = -41.142292 kcal Electronic energy + Delta-G solvation = -31378.840433 eV Core-core repulsion = 27406.435729 eV Total energy + Delta-G solvation = -3972.404703 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.79498 -40.28329 -39.24705 -38.14196 -35.67823 -34.23430 -33.96632 -33.24051 -31.91362 -30.86308 -30.07830 -28.24135 -27.57033 -25.66745 -25.46978 -24.63035 -22.60675 -21.99688 -21.59422 -21.09026 -19.32375 -19.00273 -18.53775 -17.80084 -16.97943 -16.60714 -16.50623 -16.11784 -15.78954 -15.56267 -15.36439 -15.33333 -15.12198 -14.65431 -14.43131 -14.19642 -13.98444 -13.80519 -13.54189 -13.39215 -13.28200 -13.15966 -13.13848 -13.11647 -12.89011 -12.80110 -12.77477 -12.57727 -12.25559 -12.09969 -11.94320 -11.73427 -11.69400 -11.52453 -11.36512 -10.93233 -10.80895 -10.58713 -10.19708 -9.75244 -9.23261 -8.68610 -7.68249 -4.92075 -0.09330 0.47902 1.40060 1.43691 1.48647 2.04032 2.20454 2.48950 2.63122 3.14871 3.54703 3.58803 3.71367 3.81832 3.84861 3.89548 3.97666 4.08674 4.12586 4.22067 4.23041 4.36028 4.42228 4.59503 4.63152 4.65501 4.72449 4.74830 4.81966 4.83592 4.85979 4.89535 4.95261 5.01073 5.10665 5.11068 5.16475 5.18188 5.20224 5.24798 5.38552 5.45475 5.64298 5.65869 5.68848 5.88782 6.42210 6.48506 6.79997 7.19530 7.55396 7.57665 8.30361 8.58021 9.48367 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.005601 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.572943 B = 4998.128094 C = 6489.438409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 C -0.176 4.176 4 O -0.298 6.298 5 C 0.115 3.885 6 C -0.186 4.186 7 C -0.103 4.103 8 C 0.055 3.945 9 N -0.380 5.380 10 C 0.011 3.989 11 C 0.572 3.428 12 O -0.576 6.576 13 N -0.677 5.677 14 C 0.144 3.856 15 H 0.053 0.947 16 C -0.149 4.149 17 C -0.118 4.118 18 C 0.162 3.838 19 H 0.023 0.977 20 C -0.151 4.151 21 N -0.717 5.717 22 C -0.241 4.241 23 H 0.045 0.955 24 C -0.040 4.040 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.305 1.305 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.049 0.951 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.170 0.830 40 H 0.409 0.591 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.027 0.973 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.377 0.623 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 -4.137 -9.197 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.002 3.998 3 C -0.233 4.233 4 O -0.210 6.210 5 C 0.064 3.936 6 C -0.212 4.212 7 C -0.123 4.123 8 C -0.107 4.107 9 N -0.091 5.091 10 C -0.127 4.127 11 C 0.358 3.642 12 O -0.456 6.456 13 N -0.328 5.328 14 C 0.040 3.960 15 H 0.072 0.928 16 C -0.207 4.207 17 C -0.156 4.156 18 C 0.053 3.947 19 H 0.041 0.959 20 C -0.211 4.211 21 N -0.360 5.360 22 C -0.374 4.374 23 H 0.063 0.937 24 C -0.236 4.236 25 N -0.550 5.550 26 Si 0.761 3.239 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.234 1.234 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.188 0.812 38 H 0.194 0.806 39 H 0.187 0.813 40 H 0.248 0.752 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.212 0.788 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.191 -4.123 -8.196 12.986 hybrid contribution 1.097 1.755 -1.020 2.307 sum -8.094 -2.368 -9.216 12.492 Atomic orbital electron populations 1.21824 0.91167 1.03038 1.03687 1.22899 0.96824 0.93001 0.87118 1.22372 1.01341 0.95758 1.03838 1.86432 1.27961 1.66923 1.39678 1.20262 0.86358 0.92189 0.94792 1.21958 0.95904 1.04833 0.98485 1.22584 0.95411 0.94014 1.00317 1.22968 0.99971 0.99099 0.88687 1.67613 1.00278 1.17498 1.23680 1.20732 0.93785 1.02871 0.95350 1.17869 0.84969 0.78160 0.83205 1.90679 1.21399 1.51835 1.81724 1.45848 1.20053 1.50946 1.15928 1.20970 0.92148 0.98137 0.84795 0.92847 1.22089 0.99003 0.97323 1.02318 1.22116 0.98046 0.97939 0.97549 1.20464 0.90712 0.95206 0.88305 0.95893 1.22257 1.00225 1.00324 0.98306 1.42444 1.54385 1.07183 1.32017 1.19119 1.21431 0.87679 1.09157 0.93690 1.24960 1.01666 0.98146 0.98871 1.69765 1.37992 1.29052 1.18170 0.85774 0.77842 0.83860 0.76379 1.21580 1.22004 1.23356 0.92919 0.87299 0.92308 0.89120 0.93104 0.87617 0.93173 0.81218 0.80581 0.81313 0.75217 0.89307 0.94433 0.91502 0.87225 0.90735 0.95386 0.91289 0.93313 0.78835 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.56 71.98 0.69 -2.32 16 2 C 0.06 1.46 2.85 30.59 0.09 1.55 16 3 C -0.18 -4.09 9.19 71.98 0.66 -3.43 16 4 O -0.30 -11.32 7.86 -68.59 -0.54 -11.86 16 5 C 0.11 4.41 6.62 22.94 0.15 4.57 16 6 C -0.19 -5.47 8.34 22.55 0.19 -5.28 16 7 C -0.10 -2.86 10.10 22.41 0.23 -2.63 16 8 C 0.05 1.88 11.11 84.89 0.94 2.83 16 9 N -0.38 -15.88 8.51 -184.63 -1.57 -17.45 16 10 C 0.01 0.47 6.76 41.92 0.28 0.75 16 11 C 0.57 26.65 7.77 86.78 0.67 27.33 16 12 O -0.58 -29.06 14.80 17.10 0.25 -28.81 16 13 N -0.68 -28.06 3.79 -445.44 -1.69 -29.74 16 14 C 0.14 5.07 2.57 44.99 0.12 5.19 16 15 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 16 C -0.15 -4.22 9.48 71.98 0.68 -3.53 16 17 C -0.12 -3.64 4.43 30.59 0.14 -3.50 16 18 C 0.16 6.35 2.89 44.99 0.13 6.48 16 19 H 0.02 1.00 8.08 -2.39 -0.02 0.98 16 20 C -0.15 -5.25 9.49 71.98 0.68 -4.57 16 21 N -0.72 -34.54 3.84 -322.95 -1.24 -35.78 16 22 C -0.24 -13.41 9.93 84.03 0.83 -12.58 16 23 H 0.05 2.61 7.83 -2.91 -0.02 2.58 16 24 C -0.04 -2.23 5.50 84.86 0.47 -1.76 16 25 N -0.90 -49.00 11.97 21.65 0.26 -48.74 16 26 Si 0.93 47.02 29.55 68.60 2.03 49.05 16 27 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 28 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.86 6.35 -2.39 -0.02 1.85 16 34 H 0.05 1.29 6.94 -2.39 -0.02 1.27 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.17 3.67 5.60 -2.91 -0.02 3.65 16 38 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 40 H 0.41 17.54 5.83 -92.71 -0.54 17.00 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.90 8.14 -2.38 -0.02 1.89 16 48 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.38 18.73 5.70 -92.70 -0.53 18.20 16 50 H 0.25 13.10 8.31 -92.70 -0.77 12.32 16 Total: -1.00 -72.15 402.43 4.32 -67.83 By element: Atomic # 1 Polarization: 46.56 SS G_CDS: -0.13 Total: 46.43 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.95 Total: 9.08 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -4.24 Total: -131.72 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.29 Total: -40.67 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -72.15 4.32 -67.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136069709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.686 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds