Wall clock time and date at job start Tue Mar 31 2020 19:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.47276 * 294.99872 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46894 * 111.00281 * 169.99869 * 6 5 4 8 8 C 1.46896 * 111.00173 * 293.95579 * 6 5 4 9 9 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 10 10 O 1.21285 * 120.00039 * 239.99891 * 9 2 1 11 11 N 1.34780 * 120.00249 * 59.99816 * 9 2 1 12 12 C 1.39571 * 120.00251 * 179.97438 * 11 9 2 13 13 N 1.32277 * 119.72695 * 0.02562 * 12 11 9 14 14 C 1.31953 * 121.69453 * 179.97438 * 13 12 11 15 15 C 1.38092 * 120.95289 * 359.97438 * 14 13 12 16 16 C 1.38779 * 119.35492 * 0.02562 * 15 14 13 17 17 C 1.38808 * 118.44586 * 359.74069 * 16 15 14 18 18 O 1.35967 * 120.49914 * 180.24663 * 17 16 15 19 19 C 1.42908 * 117.00076 * 0.25585 * 18 17 16 20 20 C 1.53001 * 109.47377 * 179.97438 * 19 18 17 21 21 C 1.50694 * 109.46952 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00480 * 0.02562 * 21 20 19 23 23 C 1.37885 * 119.99639 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99964 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99950 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46886 * 60.00052 * 25 23 21 27 27 H 1.48498 * 109.47354 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47281 * 300.00077 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 34 34 H 1.08998 * 109.47375 * 300.00219 * 5 4 2 35 35 H 1.09000 * 109.46912 * 60.00396 * 5 4 2 36 36 H 1.09003 * 109.47054 * 60.00351 * 7 6 5 37 37 H 1.09000 * 109.47776 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47604 * 300.00030 * 7 6 5 39 39 H 1.09002 * 109.47246 * 59.99725 * 8 6 5 40 40 H 1.09005 * 109.47645 * 180.02562 * 8 6 5 41 41 H 1.09002 * 109.47161 * 299.99691 * 8 6 5 42 42 H 0.96998 * 119.99818 * 0.02562 * 11 9 2 43 43 H 1.07999 * 119.52738 * 179.97438 * 14 13 12 44 44 H 1.07997 * 120.32839 * 180.02562 * 15 14 13 45 45 H 1.07996 * 120.78000 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.46922 * 299.99968 * 19 18 17 47 47 H 1.08998 * 109.46587 * 59.99724 * 19 18 17 48 48 H 1.09009 * 109.46932 * 300.00571 * 20 19 18 49 49 H 1.09007 * 109.46705 * 59.99861 * 20 19 18 50 50 H 0.96994 * 119.99815 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 0.0689 2.4953 6 7 2.1245 -0.6239 3.6947 7 6 1.9655 0.2158 4.8894 8 6 1.4505 -1.9177 3.8671 9 6 2.0323 -0.7104 -1.2305 10 8 2.7296 -1.6965 -1.1192 11 7 1.7067 -0.2500 -2.4546 12 6 2.1723 -0.9076 -3.5942 13 7 2.9325 -1.9826 -3.4666 14 6 3.3933 -2.6345 -4.5173 15 6 3.0966 -2.2158 -5.7993 16 6 2.3022 -1.0924 -5.9813 17 6 1.8273 -0.4294 -4.8581 18 8 1.0416 0.6727 -4.9881 19 6 0.7343 1.0972 -6.3176 20 6 -0.1534 2.3422 -6.2631 21 6 -0.4779 2.7895 -7.6651 22 1 -0.0903 2.2404 -8.5104 23 6 -1.2699 3.8997 -7.8685 24 7 -1.7415 4.5686 -6.8391 25 14 -1.6716 4.4546 -9.6064 26 1 -2.3882 3.3671 -10.3199 27 1 -2.5333 5.6629 -9.5535 28 1 -0.4134 4.7745 -10.3272 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -1.7199 1.2951 33 1 3.1264 -0.7995 1.2055 34 1 2.0699 1.0675 2.4494 35 1 0.5490 0.1471 2.5390 36 1 0.9108 0.4534 5.0288 37 1 2.3349 -0.3212 5.7630 38 1 2.5321 1.1384 4.7633 39 1 1.6427 -2.5462 2.9976 40 1 1.8310 -2.4092 4.7625 41 1 0.3772 -1.7574 3.9694 42 1 1.1493 0.5389 -2.5436 43 1 4.0116 -3.5081 -4.3725 44 1 3.4788 -2.7572 -6.6520 45 1 2.0555 -0.7450 -6.9737 46 1 1.6579 1.3320 -6.8467 47 1 0.2083 0.2990 -6.8414 48 1 -1.0770 2.1070 -5.7340 49 1 0.3723 3.1405 -5.7391 50 1 -2.2989 5.3493 -6.9822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136553492.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:15 Heat of formation + Delta-G solvation = -37.262486 kcal Electronic energy + Delta-G solvation = -28473.434870 eV Core-core repulsion = 24501.198408 eV Total energy + Delta-G solvation = -3972.236462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.92340 -39.55810 -38.01827 -37.69482 -34.83606 -34.66518 -33.48553 -31.62204 -30.64182 -29.52519 -28.69950 -27.86538 -25.70925 -25.42446 -24.19971 -23.01647 -22.48032 -21.18914 -20.67570 -19.76472 -18.34336 -17.53701 -17.17142 -16.19953 -16.04586 -15.96594 -15.74603 -15.54466 -15.17533 -14.92958 -14.79126 -14.57898 -14.24647 -14.05953 -13.86033 -13.44461 -13.14612 -12.85082 -12.76065 -12.62550 -12.41107 -12.16726 -12.03801 -12.00883 -11.93684 -11.72022 -11.46929 -11.16790 -11.08323 -10.98813 -10.79021 -10.70157 -10.67310 -10.11939 -10.05515 -9.78057 -9.43504 -9.20625 -8.98360 -8.64490 -8.53178 -7.65087 -6.19108 -4.24086 1.21755 1.45553 2.74740 2.89063 3.22922 3.27640 3.28678 3.52910 3.65957 4.02053 4.32192 4.33616 4.59003 4.69456 4.75875 4.86899 4.91651 4.95658 5.05429 5.06701 5.11028 5.17669 5.19861 5.26138 5.34842 5.36993 5.37745 5.47100 5.54754 5.57433 5.62881 5.67423 5.82537 5.85741 5.89023 6.03559 6.06989 6.15326 6.19741 6.37270 6.53238 6.64143 6.71531 6.73564 7.29390 7.33631 7.51229 7.63144 7.84371 8.08809 8.13252 8.38324 8.80863 9.40780 10.92251 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.002323 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.905035 B =12051.209889 C =14241.005148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 H 0.101 0.899 4 C -0.096 4.096 5 C 0.052 3.948 6 N -0.548 5.548 7 C 0.024 3.976 8 C 0.020 3.980 9 C 0.509 3.491 10 O -0.479 6.479 11 N -0.652 5.652 12 C 0.328 3.672 13 N -0.444 5.444 14 C 0.075 3.925 15 C -0.161 4.161 16 C -0.148 4.148 17 C 0.066 3.934 18 O -0.316 6.316 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.024 0.976 42 H 0.423 0.577 43 H 0.156 0.844 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -10.796 16.283 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.134 4.134 5 C -0.075 4.075 6 N -0.272 5.272 7 C -0.124 4.124 8 C -0.128 4.128 9 C 0.294 3.706 10 O -0.349 6.349 11 N -0.300 5.300 12 C 0.096 3.904 13 N -0.159 5.159 14 C -0.082 4.082 15 C -0.182 4.182 16 C -0.175 4.175 17 C 0.015 3.985 18 O -0.229 6.229 19 C -0.008 4.008 20 C -0.010 4.010 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.527 5.527 25 Si 0.727 3.273 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.261 0.739 43 H 0.173 0.827 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.448 -11.578 17.433 22.214 hybrid contribution -1.614 1.219 -2.109 2.922 sum 5.835 -10.359 15.324 19.395 Atomic orbital electron populations 1.21877 0.92729 1.02949 1.03143 1.21305 0.97732 1.01163 0.92819 0.88072 1.21382 1.02759 0.98795 0.90475 1.22237 0.97850 0.97801 0.89636 1.61930 1.57647 1.04468 1.03108 1.22380 0.99504 0.97797 0.92723 1.22457 0.96059 0.91547 1.02741 1.20801 0.80663 0.85156 0.83949 1.90785 1.34151 1.24107 1.85810 1.43536 1.51649 1.31107 1.03698 1.17848 0.96496 0.92369 0.83730 1.67628 1.09439 1.05247 1.33584 1.22413 0.99174 0.99327 0.87278 1.21889 1.00068 0.97478 0.98773 1.21610 1.00160 0.97140 0.98583 1.19610 0.95447 0.90521 0.92955 1.86095 1.63213 1.39666 1.33878 1.23395 0.99440 0.99159 0.78798 1.19119 0.94147 0.89621 0.98106 1.20909 1.32132 1.12274 0.91403 0.92388 1.24982 0.95533 0.96214 0.97376 1.69949 1.33942 1.18809 1.29965 0.86540 0.78476 0.78178 0.84152 1.20071 1.21081 1.20059 0.91178 0.91558 0.91994 0.91085 0.90062 0.90631 0.94333 0.95732 0.91426 0.91308 0.90762 0.91545 0.95696 0.73873 0.82655 0.84825 0.83778 0.92950 0.92966 0.95374 0.95354 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.85 37.16 0.33 -0.98 16 2 C -0.11 -1.08 2.72 -91.77 -0.25 -1.33 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.10 -0.96 3.95 -26.73 -0.11 -1.06 16 5 C 0.05 0.44 4.71 -3.83 -0.02 0.42 16 6 N -0.55 -4.84 5.02 -251.27 -1.26 -6.10 16 7 C 0.02 0.17 9.57 60.06 0.57 0.75 16 8 C 0.02 0.16 9.32 60.06 0.56 0.72 16 9 C 0.51 7.15 7.12 -10.98 -0.08 7.07 16 10 O -0.48 -8.34 14.17 5.55 0.08 -8.26 16 11 N -0.65 -9.49 5.28 -11.29 -0.06 -9.55 16 12 C 0.33 5.47 7.45 -154.44 -1.15 4.32 16 13 N -0.44 -7.48 7.87 -12.22 -0.10 -7.58 16 14 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 15 C -0.16 -2.02 10.10 -39.43 -0.40 -2.42 16 16 C -0.15 -2.17 9.14 -39.17 -0.36 -2.53 16 17 C 0.07 1.10 6.72 -38.91 -0.26 0.84 16 18 O -0.32 -5.78 9.38 -19.64 -0.18 -5.97 16 19 C 0.07 1.29 4.70 37.16 0.17 1.47 16 20 C 0.03 0.66 5.34 -27.89 -0.15 0.52 16 21 C -0.53 -14.05 9.11 -34.44 -0.31 -14.37 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 25 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 30 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.76 6.55 -51.93 -0.34 0.42 16 33 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 34 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.04 0.30 6.54 -51.93 -0.34 -0.04 16 36 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 40 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.42 5.51 7.46 -40.82 -0.30 5.20 16 43 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 45 H 0.14 1.95 6.44 -52.49 -0.34 1.62 16 46 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 47 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 48 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 49 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -32.18 405.71 -9.64 -41.82 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.21 Total: 2.78 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.74 Total: -4.17 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.68 Total: -47.88 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.11 Total: -14.23 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.18 -9.64 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136553492.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.562 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds