Wall clock time and date at job start Tue Mar 31 2020 19:12:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47209 * 2 1
4 4 C 1.53004 * 109.47219 * 119.99752 * 2 1 3
5 5 C 1.52997 * 109.47236 * 185.00185 * 4 2 1
6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 2
7 7 C 1.53002 * 109.46817 * 184.99998 * 5 4 2
8 8 N 1.46505 * 109.47212 * 64.99775 * 5 4 2
9 9 C 1.34769 * 119.99686 * 204.99833 * 8 5 4
10 10 O 1.21577 * 120.00365 * 0.02562 * 9 8 5
11 11 C 1.47519 * 119.99540 * 180.02562 * 9 8 5
12 12 C 1.36819 * 126.94251 * 179.71055 * 11 9 8
13 13 C 1.41260 * 103.84850 * 179.91015 * 12 11 9
14 14 C 1.50701 * 126.70673 * 180.12656 * 13 12 11
15 15 C 1.54273 * 110.03204 * 33.16201 * 14 13 12
16 16 C 1.54965 * 104.15894 * 217.13376 * 15 14 13
17 17 C 1.54890 * 102.77392 * 37.88904 * 16 15 14
18 18 C 1.53871 * 110.03586 * 275.94181 * 14 13 12
19 19 N 1.30130 * 106.58898 * 0.35632 * 13 12 11
20 20 O 1.20880 * 111.98027 * 359.77038 * 19 13 12
21 21 N 1.46498 * 109.47427 * 239.99832 * 2 1 3
22 22 C 1.36934 * 120.00410 * 84.99704 * 21 2 1
23 23 H 1.08002 * 119.99468 * 0.02562 * 22 21 2
24 24 C 1.38807 * 120.00378 * 180.02562 * 22 21 2
25 25 N 1.31619 * 119.99928 * 0.02562 * 24 22 21
26 26 Si 1.86806 * 120.00159 * 180.02562 * 24 22 21
27 27 H 1.48498 * 109.46913 * 359.97438 * 26 24 22
28 28 H 1.48496 * 109.47037 * 120.00496 * 26 24 22
29 29 H 1.48504 * 109.46926 * 240.00394 * 26 24 22
30 30 H 1.08998 * 109.47209 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47230 * 300.00190 * 1 2 3
32 32 H 1.09001 * 109.46752 * 59.99950 * 1 2 3
33 33 H 1.09001 * 109.46917 * 64.99618 * 4 2 1
34 34 H 1.09004 * 109.46741 * 305.00296 * 4 2 1
35 35 H 1.09000 * 109.46986 * 179.97438 * 7 5 4
36 36 H 1.09002 * 109.47075 * 299.99262 * 7 5 4
37 37 H 1.08996 * 109.47407 * 60.00219 * 7 5 4
38 38 H 0.97000 * 119.99634 * 25.00165 * 8 5 4
39 39 H 1.08011 * 128.07729 * 0.02562 * 12 11 9
40 40 H 1.08999 * 110.01519 * 154.55052 * 14 13 12
41 41 H 1.08995 * 110.48266 * 335.78036 * 15 14 13
42 42 H 1.08999 * 110.48472 * 98.42833 * 15 14 13
43 43 H 1.09002 * 110.72149 * 279.57713 * 16 15 14
44 44 H 1.08996 * 110.76329 * 156.21805 * 16 15 14
45 45 H 1.09004 * 110.48528 * 203.40333 * 17 16 15
46 46 H 1.08997 * 110.60141 * 80.81782 * 17 16 15
47 47 H 1.08997 * 110.03664 * 238.57229 * 18 14 13
48 48 H 1.09006 * 110.03006 * 359.95416 * 18 14 13
49 49 H 0.97005 * 119.99875 * 265.00366 * 21 2 1
50 50 H 0.97005 * 119.99665 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7212 1.2493
5 6 3.5649 -0.6132 1.3138
6 1 3.9955 -0.9922 0.3869
7 6 4.0851 -1.4382 2.4926
8 7 3.9480 0.7895 1.4924
9 6 5.1612 1.2136 1.0867
10 8 5.9375 0.4322 0.5720
11 6 5.5471 2.6259 1.2672
12 6 6.7358 3.2049 0.9154
13 6 6.5817 4.5549 1.3016
14 6 7.5960 5.6583 1.1441
15 6 8.4289 5.4319 -0.1346
16 6 9.8567 5.8897 0.2571
17 6 9.9843 5.3991 1.7207
18 6 8.5844 5.6380 2.3232
19 7 5.3946 4.6585 1.8244
20 8 4.8031 3.6044 1.8166
21 7 2.0184 -0.6906 -1.1961
22 6 2.1492 -0.0076 -2.3757
23 1 1.8927 1.0404 -2.4242
24 6 2.6115 -0.6621 -3.5092
25 7 2.9236 -1.9394 -3.4502
26 14 2.7905 0.2698 -5.1182
27 1 2.3765 1.6822 -4.9208
28 1 4.2074 0.2259 -5.5606
29 1 1.9293 -0.3580 -6.1524
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.7516 -1.7715 1.2057
34 1 1.6054 -0.2616 2.1370
35 1 5.1715 -1.3616 2.5383
36 1 3.6546 -1.0591 3.4195
37 1 3.8001 -2.4818 2.3597
38 1 3.3284 1.4130 1.9028
39 1 7.5916 2.7390 0.4493
40 1 7.0925 6.6238 1.0956
41 1 8.4285 4.3768 -0.4082
42 1 8.0437 6.0396 -0.9533
43 1 9.9415 6.9752 0.2047
44 1 10.6033 5.4117 -0.3770
45 1 10.7341 5.9829 2.2547
46 1 10.2361 4.3390 1.7492
47 1 8.5612 6.5939 2.8464
48 1 8.3299 4.8305 3.0098
49 1 2.2491 -1.6318 -1.1525
50 1 3.2463 -2.3969 -4.2424
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001146464176.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:12:15
Heat of formation + Delta-G solvation = 12.145294 kcal
Electronic energy + Delta-G solvation = -29490.588209 eV
Core-core repulsion = 25520.494229 eV
Total energy + Delta-G solvation = -3970.093980 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-45.05572 -39.62499 -38.65247 -36.92239 -34.61595 -33.99671 -32.47363 -31.92722
-30.48175 -29.04309 -28.95241 -28.58629 -26.34990 -24.39309 -23.58192 -23.45510
-21.51328 -20.83632 -20.76075 -19.77210 -19.73566 -18.33268 -17.75669 -17.16931
-16.37685 -16.07195 -15.79261 -15.43359 -14.86223 -14.70405 -14.23177 -14.01997
-13.85619 -13.64880 -13.54170 -13.35216 -13.04181 -12.72863 -12.23581 -12.18770
-12.06196 -11.96559 -11.73787 -11.65763 -11.55223 -11.44671 -11.38174 -11.07790
-10.96423 -10.83658 -10.83148 -10.62303 -10.45878 -10.20192 -10.12826 -10.08121
-9.88411 -9.72530 -9.60663 -8.88385 -8.85652 -6.90601 -5.71713 -2.99544
0.83737 1.96163 2.64825 3.17123 3.33781 3.46345 3.51958 3.53911
3.77592 4.15463 4.30428 4.58083 4.62140 4.63838 4.90918 5.04015
5.07430 5.11260 5.15803 5.21137 5.29415 5.34036 5.37282 5.42631
5.47785 5.57388 5.59699 5.62388 5.66682 5.70885 5.84287 5.86189
5.89477 5.91086 5.98503 6.01790 6.03161 6.12277 6.28722 6.31485
6.42721 6.55691 6.60471 6.74753 6.90610 7.08593 7.51582 7.75114
8.01851 8.22579 8.46829 9.58358 10.15300 10.49643 11.51042
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.010550 B = 0.003223 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2653.364221 B = 8686.366957 C =10149.332682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.170 3.830
3 H 0.046 0.954
4 C -0.131 4.131
5 C 0.143 3.857
6 H 0.110 0.890
7 C -0.162 4.162
8 N -0.699 5.699
9 C 0.604 3.396
10 O -0.504 6.504
11 C -0.071 4.071
12 C -0.154 4.154
13 C 0.021 3.979
14 C -0.014 4.014
15 C -0.121 4.121
16 C -0.124 4.124
17 C -0.125 4.125
18 C -0.114 4.114
19 N -0.349 5.349
20 O 0.114 5.886
21 N -0.721 5.721
22 C -0.233 4.233
23 H 0.067 0.933
24 C -0.012 4.012
25 N -0.931 5.931
26 Si 0.901 3.099
27 H -0.282 1.282
28 H -0.292 1.292
29 H -0.292 1.292
30 H 0.046 0.954
31 H 0.035 0.965
32 H 0.052 0.948
33 H 0.079 0.921
34 H 0.064 0.936
35 H 0.057 0.943
36 H 0.052 0.948
37 H 0.067 0.933
38 H 0.401 0.599
39 H 0.181 0.819
40 H 0.091 0.909
41 H 0.076 0.924
42 H 0.073 0.927
43 H 0.068 0.932
44 H 0.071 0.929
45 H 0.067 0.933
46 H 0.068 0.932
47 H 0.070 0.930
48 H 0.066 0.934
49 H 0.383 0.617
50 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.385 12.515 15.262 21.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.060 3.940
3 H 0.064 0.936
4 C -0.170 4.170
5 C 0.039 3.961
6 H 0.128 0.872
7 C -0.220 4.220
8 N -0.349 5.349
9 C 0.386 3.614
10 O -0.378 6.378
11 C -0.137 4.137
12 C -0.176 4.176
13 C -0.136 4.136
14 C -0.034 4.034
15 C -0.159 4.159
16 C -0.161 4.161
17 C -0.162 4.162
18 C -0.153 4.153
19 N -0.050 5.050
20 O 0.042 5.958
21 N -0.362 5.362
22 C -0.365 4.365
23 H 0.085 0.915
24 C -0.208 4.208
25 N -0.579 5.579
26 Si 0.733 3.267
27 H -0.207 1.207
28 H -0.219 1.219
29 H -0.219 1.219
30 H 0.065 0.935
31 H 0.054 0.946
32 H 0.071 0.929
33 H 0.097 0.903
34 H 0.082 0.918
35 H 0.076 0.924
36 H 0.071 0.929
37 H 0.086 0.914
38 H 0.236 0.764
39 H 0.198 0.802
40 H 0.109 0.891
41 H 0.095 0.905
42 H 0.091 0.909
43 H 0.087 0.913
44 H 0.089 0.911
45 H 0.086 0.914
46 H 0.087 0.913
47 H 0.089 0.911
48 H 0.085 0.915
49 H 0.217 0.783
50 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 9.248 13.051 15.282 22.122
hybrid contribution 0.244 0.015 -1.174 1.199
sum 9.492 13.066 14.108 21.444
Atomic orbital electron populations
1.22450 0.99423 1.00817 0.99851 1.20244 0.91699 0.95570 0.86511
0.93585 1.22186 0.93298 1.02485 0.99042 1.21174 0.95589 0.79063
1.00246 0.87219 1.22196 1.01573 1.00336 0.97932 1.45891 1.15483
1.12435 1.61133 1.16467 0.83039 0.82878 0.79027 1.90900 1.51409
1.52736 1.42774 1.24441 0.93171 0.92489 1.03586 1.22757 0.99138
0.92709 1.03042 1.23542 0.93730 0.95803 1.00567 1.20214 0.92159
0.94482 0.96498 1.22540 0.94643 1.02699 0.96041 1.22506 0.96462
1.00921 0.96248 1.22378 0.96386 1.01597 0.95886 1.22184 0.94037
1.02336 0.96722 1.73699 1.08344 1.04104 1.18847 1.84957 1.38648
1.12504 1.59675 1.42406 1.77986 1.10564 1.05282 1.19202 1.36259
0.93687 0.87332 0.91470 1.24685 1.02249 0.95931 0.97911 1.69656
1.51080 1.08567 1.28647 0.86202 0.77325 0.78813 0.84390 1.20708
1.21907 1.21950 0.93502 0.94645 0.92891 0.90285 0.91786 0.92423
0.92888 0.91367 0.76416 0.80163 0.89072 0.90488 0.90866 0.91288
0.91066 0.91437 0.91281 0.91084 0.91506 0.78326 0.93655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16
2 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16
3 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16
4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16
5 C 0.14 2.21 2.52 -67.93 -0.17 2.03 16
6 H 0.11 2.22 7.05 -51.93 -0.37 1.85 16
7 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16
8 N -0.70 -10.12 4.44 -54.85 -0.24 -10.37 16
9 C 0.60 9.94 7.78 -12.48 -0.10 9.84 16
10 O -0.50 -10.09 16.58 5.30 0.09 -10.00 16
11 C -0.07 -1.03 7.29 -36.31 -0.26 -1.29 16
12 C -0.15 -2.03 9.88 -38.95 -0.38 -2.42 16
13 C 0.02 0.26 6.01 -82.16 -0.49 -0.23 16
14 C -0.01 -0.13 3.43 -90.65 -0.31 -0.45 16
15 C -0.12 -1.03 6.32 -25.03 -0.16 -1.19 16
16 C -0.12 -0.85 6.91 -24.70 -0.17 -1.02 16
17 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16
18 C -0.11 -0.92 6.45 -25.62 -0.17 -1.08 16
19 N -0.35 -4.83 12.04 33.52 0.40 -4.43 16
20 O 0.11 1.58 11.04 15.55 0.17 1.75 16
21 N -0.72 -17.41 4.49 -53.43 -0.24 -17.65 16
22 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16
23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16
25 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16
26 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16
27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
29 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16
30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16
34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
38 H 0.40 4.80 8.43 -40.82 -0.34 4.46 16
39 H 0.18 2.15 7.29 -52.48 -0.38 1.77 16
40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16
41 H 0.08 0.71 6.26 -51.93 -0.32 0.38 16
42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
48 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16
49 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16
50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 407.81 15.07 6.15 6.15
Total: -1.00 -32.34 407.81 -8.62 -40.97
By element:
Atomic # 1 Polarization: 18.82 SS G_CDS: -8.41 Total: 10.41 kcal
Atomic # 6 Polarization: -4.94 SS G_CDS: -2.24 Total: -7.18 kcal
Atomic # 7 Polarization: -60.60 SS G_CDS: 0.64 Total: -59.96 kcal
Atomic # 8 Polarization: -8.51 SS G_CDS: 0.26 Total: -8.25 kcal
Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -32.34 -8.62 -40.97 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001146464176.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.112 kcal
(2) G-P(sol) polarization free energy of solvation -32.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds