Wall clock time and date at job start Tue Mar 31 2020 19:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.52999 * 109.46626 * 174.99857 * 4 2 1 6 6 H 1.09002 * 109.47016 * 55.00506 * 5 4 2 7 7 C 1.53004 * 109.46978 * 174.99863 * 5 4 2 8 8 N 1.46500 * 109.47515 * 294.99964 * 5 4 2 9 9 C 1.34774 * 119.99721 * 155.00132 * 8 5 4 10 10 O 1.21582 * 120.00430 * 0.02562 * 9 8 5 11 11 C 1.47516 * 119.99890 * 180.02562 * 9 8 5 12 12 C 1.36825 * 126.94620 * 179.71142 * 11 9 8 13 13 C 1.41259 * 103.84552 * 179.97438 * 12 11 9 14 14 C 1.50703 * 126.70356 * 180.13408 * 13 12 11 15 15 C 1.54272 * 110.03006 * 32.43371 * 14 13 12 16 16 C 1.54893 * 104.19176 * 217.10265 * 15 14 13 17 17 C 1.54888 * 102.75088 * 37.94430 * 16 15 14 18 18 C 1.53870 * 110.03465 * 275.26398 * 14 13 12 19 19 N 1.30132 * 106.58978 * 0.33708 * 13 12 11 20 20 O 1.20883 * 111.98337 * 359.78341 * 19 13 12 21 21 N 1.46495 * 109.47194 * 120.00216 * 2 1 3 22 22 C 1.36933 * 119.99959 * 274.99729 * 21 2 1 23 23 H 1.07997 * 120.00399 * 0.02562 * 22 21 2 24 24 C 1.38821 * 119.99986 * 179.97438 * 22 21 2 25 25 N 1.31622 * 119.99626 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99907 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46900 * 90.00349 * 26 24 22 28 28 H 1.48497 * 109.46913 * 209.99775 * 26 24 22 29 29 H 1.48493 * 109.47222 * 329.99991 * 26 24 22 30 30 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 31 31 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 32 32 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 34 34 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 35 35 H 1.09007 * 109.46638 * 59.99986 * 7 5 4 36 36 H 1.09001 * 109.47356 * 180.02562 * 7 5 4 37 37 H 1.09000 * 109.47210 * 300.00626 * 7 5 4 38 38 H 0.96996 * 119.99912 * 335.00236 * 8 5 4 39 39 H 1.08000 * 128.07448 * 0.03263 * 12 11 9 40 40 H 1.09003 * 110.01243 * 153.87237 * 14 13 12 41 41 H 1.09001 * 110.48611 * 335.78044 * 15 14 13 42 42 H 1.08996 * 110.48520 * 98.42700 * 15 14 13 43 43 H 1.08995 * 110.75230 * 279.62608 * 16 15 14 44 44 H 1.09001 * 110.75130 * 156.26197 * 16 15 14 45 45 H 1.08998 * 110.48614 * 203.37983 * 17 16 15 46 46 H 1.08993 * 110.60113 * 80.78789 * 17 16 15 47 47 H 1.08996 * 110.03391 * 238.56980 * 18 14 13 48 48 H 1.08999 * 110.03104 * 359.95587 * 18 14 13 49 49 H 0.97007 * 119.99853 * 94.99634 * 21 2 1 50 50 H 0.96997 * 119.99546 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9953 -0.9923 -0.3869 7 6 4.0850 -1.4383 -2.4926 8 7 3.9479 0.7894 -1.4926 9 6 5.1611 1.2134 -1.0868 10 8 5.9378 0.4318 -0.5729 11 6 5.5468 2.6259 -1.2663 12 6 6.7313 3.2073 -0.9045 13 6 6.5799 4.5558 -1.2972 14 6 7.5936 5.6595 -1.1383 15 6 9.0211 5.0875 -1.2610 16 6 9.8444 5.8966 -0.2281 17 6 8.8521 6.0564 0.9503 18 6 7.4861 6.2755 0.2676 19 7 5.3923 4.6596 -1.8190 20 8 4.8016 3.6050 -1.8130 21 7 2.0183 -0.6906 1.1961 22 6 2.1491 -0.0075 2.3756 23 1 1.8920 1.0402 2.4243 24 6 2.6114 -0.6621 3.5092 25 7 2.9244 -1.9392 3.4500 26 14 2.7905 0.2699 5.1181 27 1 1.5228 0.1798 5.8862 28 1 3.8946 -0.3241 5.9139 29 1 3.0966 1.6948 4.8333 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0275 0.0005 33 1 1.7514 -1.7715 -1.2057 34 1 1.6052 -0.2617 -2.1370 35 1 3.6543 -1.0593 -3.4195 36 1 5.1714 -1.3618 -2.5383 37 1 3.7999 -2.4820 -2.3596 38 1 3.3284 1.4128 -1.9029 39 1 7.5835 2.7434 -0.4303 40 1 7.4316 6.4266 -1.8955 41 1 9.0300 4.0269 -1.0094 42 1 9.4102 5.2453 -2.2668 43 1 10.1232 6.8693 -0.6331 44 1 10.7278 5.3392 0.0835 45 1 9.1178 6.9213 1.5582 46 1 8.8330 5.1537 1.5608 47 1 7.2729 7.3418 0.1927 48 1 6.7002 5.7767 0.8347 49 1 2.2490 -1.6319 1.1525 50 1 3.2470 -2.3967 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146464178.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:18 Heat of formation + Delta-G solvation = 12.201332 kcal Electronic energy + Delta-G solvation = -29542.048418 eV Core-core repulsion = 25571.956868 eV Total energy + Delta-G solvation = -3970.091550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.05274 -39.62269 -38.63961 -36.92129 -34.61433 -33.99137 -32.47179 -31.92614 -30.48014 -29.02461 -28.93802 -28.58600 -26.34918 -24.39183 -23.57975 -23.45041 -21.50278 -20.82115 -20.75702 -19.76654 -19.73184 -18.33010 -17.75523 -17.16945 -16.35769 -16.06761 -15.79933 -15.41609 -14.86191 -14.69273 -14.22738 -14.02259 -13.84997 -13.65089 -13.52915 -13.34183 -13.04015 -12.72257 -12.22550 -12.17790 -12.05659 -11.96361 -11.73736 -11.65550 -11.54672 -11.40732 -11.37502 -11.07628 -10.96335 -10.82658 -10.79538 -10.62034 -10.45810 -10.22305 -10.12272 -10.08002 -9.89821 -9.72263 -9.60236 -8.88057 -8.85278 -6.90720 -5.71655 -2.99465 0.83874 1.96444 2.64962 3.17333 3.33998 3.46293 3.51697 3.53116 3.77662 4.16670 4.32430 4.58830 4.63800 4.64680 4.91270 5.04454 5.08256 5.12482 5.17123 5.22531 5.30196 5.36378 5.37753 5.43531 5.47873 5.57406 5.62301 5.63125 5.66782 5.72866 5.86198 5.86254 5.90600 5.91337 6.01888 6.02451 6.04582 6.12350 6.28738 6.31603 6.42773 6.55728 6.60591 6.74797 6.90603 7.08667 7.51710 7.74558 8.02015 8.22700 8.46941 9.58362 10.15338 10.49714 11.51085 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.003409 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.470908 B = 8212.351692 C = 9854.002656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.110 0.890 7 C -0.162 4.162 8 N -0.699 5.699 9 C 0.604 3.396 10 O -0.504 6.504 11 C -0.071 4.071 12 C -0.154 4.154 13 C 0.021 3.979 14 C -0.014 4.014 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.117 4.117 19 N -0.349 5.349 20 O 0.114 5.886 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.067 0.933 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.181 0.819 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 12.709 -14.321 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 H 0.064 0.936 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.128 0.872 7 C -0.220 4.220 8 N -0.349 5.349 9 C 0.386 3.614 10 O -0.378 6.378 11 C -0.137 4.137 12 C -0.176 4.176 13 C -0.137 4.137 14 C -0.033 4.033 15 C -0.158 4.158 16 C -0.161 4.161 17 C -0.163 4.163 18 C -0.155 4.155 19 N -0.050 5.050 20 O 0.042 5.958 21 N -0.362 5.362 22 C -0.366 4.366 23 H 0.085 0.915 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.198 0.802 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.897 13.239 -14.336 21.447 hybrid contribution 0.229 0.025 1.171 1.194 sum 9.126 13.264 -13.165 20.798 Atomic orbital electron populations 1.22449 0.99430 1.00822 0.99847 1.20242 0.91694 0.95567 0.86514 0.93593 1.22185 0.93301 1.02485 0.99040 1.21174 0.95586 0.79064 1.00247 0.87222 1.22198 1.01576 1.00332 0.97932 1.45889 1.15486 1.12436 1.61128 1.16469 0.83039 0.82884 0.79015 1.90900 1.51393 1.52730 1.42807 1.24442 0.93215 0.92481 1.03554 1.22758 0.99234 0.92726 1.02928 1.23549 0.93933 0.95735 1.00434 1.20212 0.91214 0.92951 0.98916 1.22513 0.92756 1.00600 0.99903 1.22492 0.97923 1.00134 0.95569 1.22384 0.94176 1.02155 0.97609 1.22202 0.98389 1.00845 0.94069 1.73698 1.08315 1.04099 1.18891 1.84958 1.38631 1.12380 1.59815 1.42397 1.78001 1.10559 1.05264 1.19160 1.36384 0.93687 0.87357 0.91527 1.24682 1.02209 0.95927 0.97887 1.69645 1.50994 1.08596 1.28730 0.86270 0.77246 0.78861 0.84319 1.21828 1.21790 1.20941 0.92904 0.94638 0.93500 0.90284 0.91785 0.92888 0.92416 0.91371 0.76418 0.80161 0.89112 0.90559 0.91039 0.91316 0.91103 0.91380 0.91148 0.91050 0.91280 0.78321 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.17 2.84 -67.93 -0.19 2.97 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 5 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.11 2.22 7.05 -51.93 -0.37 1.85 16 7 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 8 N -0.70 -10.14 4.44 -54.85 -0.24 -10.38 16 9 C 0.60 9.95 7.78 -12.48 -0.10 9.85 16 10 O -0.50 -10.09 16.58 5.29 0.09 -10.00 16 11 C -0.07 -1.03 7.29 -36.31 -0.26 -1.29 16 12 C -0.15 -2.04 9.88 -38.95 -0.38 -2.42 16 13 C 0.02 0.26 6.01 -82.16 -0.49 -0.23 16 14 C -0.01 -0.13 3.43 -90.65 -0.31 -0.44 16 15 C -0.12 -0.94 6.32 -25.07 -0.16 -1.10 16 16 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 17 C -0.13 -0.99 6.83 -25.07 -0.17 -1.16 16 18 C -0.12 -1.06 6.45 -25.61 -0.17 -1.23 16 19 N -0.35 -4.84 12.04 33.52 0.40 -4.44 16 20 O 0.11 1.58 11.04 15.55 0.17 1.75 16 21 N -0.72 -17.42 4.49 -53.43 -0.24 -17.66 16 22 C -0.23 -6.48 9.93 -15.06 -0.15 -6.63 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 26 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.40 4.81 8.43 -40.82 -0.34 4.46 16 39 H 0.18 2.16 7.26 -52.49 -0.38 1.78 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.64 6.23 -51.93 -0.32 0.32 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 49 H 0.38 9.89 7.80 -40.82 -0.32 9.58 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 407.75 15.07 6.14 6.14 Total: -1.00 -32.31 407.75 -8.62 -40.93 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.41 Total: 10.65 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.24 Total: -7.36 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.64 Total: -59.98 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.26 Total: -8.25 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.31 -8.62 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146464178.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.134 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds