Wall clock time and date at job start Tue Mar 31 2020 19:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47035 * 240.00206 * 2 1 3 5 5 C 1.52997 * 109.47049 * 174.99875 * 4 2 1 6 6 H 1.09001 * 109.46832 * 55.00084 * 5 4 2 7 7 C 1.53006 * 109.47127 * 174.99763 * 5 4 2 8 8 N 1.46492 * 109.47244 * 295.00135 * 5 4 2 9 9 C 1.34779 * 120.00234 * 155.00032 * 8 5 4 10 10 O 1.21283 * 119.99840 * 359.97438 * 9 8 5 11 11 C 1.50701 * 120.00108 * 179.97438 * 9 8 5 12 12 C 1.53002 * 109.47061 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47077 * 179.97438 * 12 11 9 14 14 O 1.42903 * 109.47207 * 179.97438 * 13 12 11 15 15 C 1.35904 * 117.00163 * 180.02562 * 14 13 12 16 16 C 1.39141 * 120.47183 * 179.72797 * 15 14 13 17 17 C 1.38542 * 118.36895 * 179.70937 * 16 15 14 18 18 C 1.38254 * 119.22354 * 0.58261 * 17 16 15 19 19 N 1.31845 * 120.88732 * 359.67243 * 18 17 16 20 20 C 1.31847 * 121.78110 * 0.03212 * 19 18 17 21 21 N 1.46501 * 109.47050 * 120.00322 * 2 1 3 22 22 C 1.36932 * 119.99774 * 274.99958 * 21 2 1 23 23 H 1.08001 * 120.00084 * 0.02562 * 22 21 2 24 24 C 1.38815 * 120.00137 * 180.02562 * 22 21 2 25 25 N 1.31623 * 119.99788 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00205 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47158 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47036 * 119.99934 * 26 24 22 29 29 H 1.48500 * 109.46751 * 239.99501 * 26 24 22 30 30 H 1.09006 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47307 * 299.99729 * 1 2 3 32 32 H 1.09000 * 109.47516 * 59.99924 * 1 2 3 33 33 H 1.08998 * 109.47252 * 55.00071 * 4 2 1 34 34 H 1.09006 * 109.47074 * 295.00264 * 4 2 1 35 35 H 1.09001 * 109.46998 * 59.99868 * 7 5 4 36 36 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.46801 * 300.00272 * 7 5 4 38 38 H 0.97005 * 120.00153 * 334.99565 * 8 5 4 39 39 H 1.08997 * 109.46862 * 299.99840 * 11 9 8 40 40 H 1.08993 * 109.46756 * 60.00116 * 11 9 8 41 41 H 1.09007 * 109.46779 * 300.00097 * 12 11 9 42 42 H 1.08995 * 109.47247 * 59.99569 * 12 11 9 43 43 H 1.08991 * 109.47167 * 300.00004 * 13 12 11 44 44 H 1.09002 * 109.46751 * 60.00205 * 13 12 11 45 45 H 1.07998 * 120.81379 * 359.97438 * 16 15 14 46 46 H 1.07999 * 120.38503 * 180.25446 * 17 16 15 47 47 H 1.07998 * 119.55563 * 179.70099 * 18 17 16 48 48 H 1.07994 * 119.66270 * 179.97438 * 20 19 18 49 49 H 0.97001 * 119.99978 * 95.00309 * 21 2 1 50 50 H 0.97000 * 120.00436 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.9953 -0.9922 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9479 0.7894 -1.4924 9 6 5.1611 1.2136 -1.0867 10 8 5.9356 0.4341 -0.5732 11 6 5.5554 2.6563 -1.2710 12 6 6.9706 2.8713 -0.7307 13 6 7.3712 4.3359 -0.9184 14 8 8.6928 4.5369 -0.4132 15 6 9.2035 5.7931 -0.5035 16 6 10.4816 6.0709 -0.0288 17 6 10.9613 7.3651 -0.1485 18 6 10.1564 8.3332 -0.7199 19 7 8.9474 8.0378 -1.1550 20 6 8.4559 6.8177 -1.0652 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8918 1.0402 2.4243 24 6 2.6123 -0.6618 3.5090 25 7 2.9253 -1.9389 3.4499 26 14 2.7900 0.2698 5.1183 27 1 2.3751 1.6819 4.9212 28 1 1.9298 -0.3596 6.1522 29 1 4.2069 0.2277 5.5607 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.6545 -1.0593 -3.4194 36 1 5.1715 -1.3617 -2.5382 37 1 3.8000 -2.4819 -2.3595 38 1 3.3284 1.4129 -1.9028 39 1 5.5298 2.9073 -2.3314 40 1 4.8583 3.2955 -0.7293 41 1 6.9967 2.6201 0.3297 42 1 7.6675 2.2321 -1.2727 43 1 7.3452 4.5867 -1.9788 44 1 6.6743 4.9755 -0.3766 45 1 11.0864 5.2958 0.4180 46 1 11.9504 7.6160 0.2052 47 1 10.5231 9.3449 -0.8114 48 1 7.4610 6.6139 -1.4323 49 1 2.2491 -1.6318 1.1525 50 1 3.2486 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146521720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:34 Heat of formation + Delta-G solvation = -46.618179 kcal Electronic energy + Delta-G solvation = -28312.999186 eV Core-core repulsion = 24340.357031 eV Total energy + Delta-G solvation = -3972.642155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.89888 -39.63861 -38.49751 -36.90653 -34.51538 -33.97663 -32.60344 -32.13692 -30.86630 -30.38689 -28.59604 -27.44286 -26.30673 -24.26301 -23.62214 -23.39476 -22.14084 -20.93629 -20.13900 -19.69832 -18.59400 -17.41319 -17.12659 -16.89903 -16.71748 -16.47139 -15.82845 -15.32824 -14.81441 -14.69452 -14.23610 -14.14888 -13.93387 -13.69894 -13.57900 -13.33498 -13.15831 -12.90265 -12.67198 -12.60852 -12.33375 -12.14830 -11.95170 -11.74475 -11.71436 -11.56997 -11.51014 -11.02631 -10.89419 -10.82686 -10.60547 -10.41315 -10.19633 -10.05987 -9.87456 -9.78973 -9.61345 -9.51302 -8.87003 -8.78248 -8.68300 -6.90537 -5.71728 -2.99641 0.76306 0.95274 2.69145 2.96641 3.46051 3.46171 3.50749 3.52095 3.53739 4.14411 4.31773 4.49477 4.62310 4.63510 4.64812 4.72176 4.80323 4.95503 5.08916 5.12441 5.15457 5.19549 5.27562 5.41856 5.46173 5.52026 5.62674 5.63524 5.70002 5.74480 5.89471 5.91680 5.95026 6.01949 6.09838 6.14003 6.20628 6.29731 6.36359 6.44545 6.57517 6.73570 6.82773 6.93737 6.94627 7.07702 7.60278 7.73457 7.81811 8.46572 8.57510 9.57940 10.15546 10.49554 11.51071 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.002378 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.424394 B =11773.649330 C =13326.319586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.717 5.717 9 C 0.513 3.487 10 O -0.532 6.532 11 C -0.137 4.137 12 C -0.104 4.104 13 C 0.057 3.943 14 O -0.305 6.305 15 C 0.086 3.914 16 C -0.112 4.112 17 C -0.132 4.132 18 C 0.054 3.946 19 N -0.451 5.451 20 C 0.014 3.986 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.157 0.843 48 H 0.159 0.841 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 15.300 -15.264 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.123 0.877 7 C -0.219 4.219 8 N -0.369 5.369 9 C 0.299 3.701 10 O -0.408 6.408 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.018 4.018 14 O -0.217 6.217 15 C 0.038 3.962 16 C -0.138 4.138 17 C -0.151 4.151 18 C -0.104 4.104 19 N -0.160 5.160 20 C -0.144 4.144 21 N -0.362 5.362 22 C -0.365 4.365 23 H 0.085 0.915 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.734 3.266 27 H -0.207 1.207 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.227 0.773 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.174 0.826 48 H 0.176 0.824 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.616 15.291 -15.036 23.503 hybrid contribution 0.085 -0.102 1.082 1.091 sum 9.701 15.189 -13.954 22.793 Atomic orbital electron populations 1.22462 0.99581 1.00799 0.99728 1.20218 0.91523 0.95517 0.86582 0.93671 1.22164 0.93813 1.02184 0.98761 1.21018 0.95019 0.80270 0.99798 0.87697 1.22180 1.01451 1.00214 0.98030 1.45968 1.16478 1.11639 1.62765 1.20326 0.82028 0.89796 0.77953 1.90746 1.51060 1.56597 1.42374 1.21506 0.97791 0.95266 1.03159 1.21227 0.95490 0.92959 1.04513 1.22966 0.81288 0.98883 0.98674 1.86116 1.32455 1.25292 1.77819 1.20119 0.94199 0.85472 0.96457 1.21015 0.93786 0.97871 1.01144 1.22036 1.01299 0.92732 0.99075 1.22662 0.90126 1.00070 0.97526 1.67525 1.13814 1.20032 1.14660 1.22966 1.00945 0.88539 1.01930 1.42401 1.77959 1.10566 1.05271 1.19181 1.36301 0.93661 0.87338 0.91507 1.24702 1.02240 0.95949 0.97960 1.69655 1.50972 1.08610 1.28670 0.86192 0.77339 0.78747 0.84366 1.20710 1.21983 1.21900 0.93546 0.92931 0.94749 0.92118 0.90701 0.93220 0.92587 0.91804 0.77309 0.88987 0.88532 0.89488 0.89956 0.91664 0.91455 0.83887 0.84073 0.82574 0.82424 0.78353 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.93 4.29 -26.73 -0.11 -2.05 16 5 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 6 H 0.11 2.21 7.05 -51.93 -0.37 1.85 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 8 N -0.72 -9.72 4.45 -53.81 -0.24 -9.96 16 9 C 0.51 7.73 7.79 -10.98 -0.09 7.64 16 10 O -0.53 -10.68 15.64 5.55 0.09 -10.59 16 11 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 12 C -0.10 -1.16 4.87 -26.73 -0.13 -1.29 16 13 C 0.06 0.51 4.75 37.16 0.18 0.69 16 14 O -0.30 -3.43 10.15 -19.44 -0.20 -3.63 16 15 C 0.09 0.89 6.71 -39.07 -0.26 0.63 16 16 C -0.11 -1.00 10.13 -39.13 -0.40 -1.40 16 17 C -0.13 -0.96 10.11 -39.46 -0.40 -1.36 16 18 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 19 N -0.45 -4.79 10.36 -13.13 -0.14 -4.93 16 20 C 0.01 0.14 10.22 -17.37 -0.18 -0.04 16 21 N -0.72 -17.48 4.49 -53.43 -0.24 -17.72 16 22 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 26 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.39 4.04 8.60 -40.82 -0.35 3.69 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.20 8.10 -51.93 -0.42 0.77 16 42 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.07 0.45 7.68 -51.93 -0.40 0.05 16 44 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.16 1.26 6.32 -52.49 -0.33 0.93 16 49 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 50 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 415.15 15.07 6.26 6.26 Total: -1.00 -35.34 415.15 -8.86 -44.20 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.44 Total: 10.99 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.65 Total: -4.73 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.11 Total: -60.34 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.11 Total: -14.22 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.34 -8.86 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146521720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.420 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds