Wall clock time and date at job start Tue Mar 31 2020 19:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47035 * 240.00206 * 2 1 3 5 5 C 1.52997 * 109.47049 * 174.99875 * 4 2 1 6 6 H 1.09001 * 109.46832 * 55.00084 * 5 4 2 7 7 C 1.53006 * 109.47127 * 174.99763 * 5 4 2 8 8 N 1.46492 * 109.47244 * 295.00135 * 5 4 2 9 9 C 1.34779 * 120.00234 * 155.00032 * 8 5 4 10 10 O 1.21283 * 119.99840 * 359.97438 * 9 8 5 11 11 C 1.50701 * 120.00108 * 179.97438 * 9 8 5 12 12 C 1.53002 * 109.47061 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47077 * 179.97438 * 12 11 9 14 14 O 1.42903 * 109.47207 * 179.97438 * 13 12 11 15 15 C 1.35904 * 117.00163 * 180.02562 * 14 13 12 16 16 C 1.39141 * 120.47183 * 179.72797 * 15 14 13 17 17 C 1.38542 * 118.36895 * 179.70937 * 16 15 14 18 18 C 1.38254 * 119.22354 * 0.58261 * 17 16 15 19 19 N 1.31845 * 120.88732 * 359.67243 * 18 17 16 20 20 C 1.31847 * 121.78110 * 0.03212 * 19 18 17 21 21 N 1.46501 * 109.47050 * 120.00322 * 2 1 3 22 22 C 1.36932 * 119.99774 * 274.99958 * 21 2 1 23 23 H 1.08001 * 120.00084 * 0.02562 * 22 21 2 24 24 C 1.38815 * 120.00137 * 180.02562 * 22 21 2 25 25 N 1.31623 * 119.99788 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00205 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47158 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47036 * 119.99934 * 26 24 22 29 29 H 1.48500 * 109.46751 * 239.99501 * 26 24 22 30 30 H 1.09006 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47307 * 299.99729 * 1 2 3 32 32 H 1.09000 * 109.47516 * 59.99924 * 1 2 3 33 33 H 1.08998 * 109.47252 * 55.00071 * 4 2 1 34 34 H 1.09006 * 109.47074 * 295.00264 * 4 2 1 35 35 H 1.09001 * 109.46998 * 59.99868 * 7 5 4 36 36 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.46801 * 300.00272 * 7 5 4 38 38 H 0.97005 * 120.00153 * 334.99565 * 8 5 4 39 39 H 1.08997 * 109.46862 * 299.99840 * 11 9 8 40 40 H 1.08993 * 109.46756 * 60.00116 * 11 9 8 41 41 H 1.09007 * 109.46779 * 300.00097 * 12 11 9 42 42 H 1.08995 * 109.47247 * 59.99569 * 12 11 9 43 43 H 1.08991 * 109.47167 * 300.00004 * 13 12 11 44 44 H 1.09002 * 109.46751 * 60.00205 * 13 12 11 45 45 H 1.07998 * 120.81379 * 359.97438 * 16 15 14 46 46 H 1.07999 * 120.38503 * 180.25446 * 17 16 15 47 47 H 1.07998 * 119.55563 * 179.70099 * 18 17 16 48 48 H 1.07994 * 119.66270 * 179.97438 * 20 19 18 49 49 H 0.97001 * 119.99978 * 95.00309 * 21 2 1 50 50 H 0.97000 * 120.00436 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.9953 -0.9922 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9479 0.7894 -1.4924 9 6 5.1611 1.2136 -1.0867 10 8 5.9356 0.4341 -0.5732 11 6 5.5554 2.6563 -1.2710 12 6 6.9706 2.8713 -0.7307 13 6 7.3712 4.3359 -0.9184 14 8 8.6928 4.5369 -0.4132 15 6 9.2035 5.7931 -0.5035 16 6 10.4816 6.0709 -0.0288 17 6 10.9613 7.3651 -0.1485 18 6 10.1564 8.3332 -0.7199 19 7 8.9474 8.0378 -1.1550 20 6 8.4559 6.8177 -1.0652 21 7 2.0183 -0.6907 1.1961 22 6 2.1491 -0.0076 2.3757 23 1 1.8918 1.0402 2.4243 24 6 2.6123 -0.6618 3.5090 25 7 2.9253 -1.9389 3.4499 26 14 2.7900 0.2698 5.1183 27 1 2.3751 1.6819 4.9212 28 1 1.9298 -0.3596 6.1522 29 1 4.2069 0.2277 5.5607 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.6545 -1.0593 -3.4194 36 1 5.1715 -1.3617 -2.5382 37 1 3.8000 -2.4819 -2.3595 38 1 3.3284 1.4129 -1.9028 39 1 5.5298 2.9073 -2.3314 40 1 4.8583 3.2955 -0.7293 41 1 6.9967 2.6201 0.3297 42 1 7.6675 2.2321 -1.2727 43 1 7.3452 4.5867 -1.9788 44 1 6.6743 4.9755 -0.3766 45 1 11.0864 5.2958 0.4180 46 1 11.9504 7.6160 0.2052 47 1 10.5231 9.3449 -0.8114 48 1 7.4610 6.6139 -1.4323 49 1 2.2491 -1.6318 1.1525 50 1 3.2486 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146521720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:33 Heat of formation + Delta-G solvation = -71.369778 kcal Electronic energy + Delta-G solvation = -28314.072496 eV Core-core repulsion = 24340.357031 eV Total energy + Delta-G solvation = -3973.715465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58273 -40.83904 -39.23635 -38.33345 -36.05903 -34.93267 -33.99075 -33.26588 -32.06728 -31.15729 -30.41267 -28.27453 -27.56478 -25.67070 -24.97785 -24.13187 -23.02470 -22.10250 -21.31749 -21.14111 -19.38315 -19.21481 -18.17718 -17.57505 -17.49614 -17.39661 -17.11663 -16.60886 -16.25513 -15.66060 -15.49951 -15.38613 -15.16061 -14.90308 -14.52509 -14.48236 -14.27186 -13.97003 -13.94243 -13.59233 -13.41854 -13.29883 -13.16845 -13.03158 -12.87057 -12.76999 -12.66022 -12.52122 -12.33793 -12.21379 -12.14759 -11.80764 -11.71828 -11.54557 -11.39693 -10.93110 -10.76750 -10.69456 -10.45921 -9.91206 -9.47275 -8.94416 -7.92257 -5.17302 0.13153 0.27685 1.41668 1.43713 1.51857 1.79952 1.95249 2.49324 2.55917 2.81037 3.42630 3.53987 3.64085 3.74348 3.85853 3.88992 3.92428 4.01747 4.03772 4.09794 4.15779 4.31060 4.35903 4.41997 4.45548 4.53145 4.57186 4.63765 4.67125 4.73123 4.80993 4.85065 4.97159 4.99444 5.04037 5.06125 5.11969 5.13689 5.21433 5.26156 5.37339 5.45547 5.53341 5.58186 5.64955 5.73549 6.24367 6.31192 6.73859 6.95075 7.36631 7.47561 8.17813 8.36629 9.31894 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.002378 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.424394 B =11773.649330 C =13326.319586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.047 0.953 4 C -0.117 4.117 5 C 0.145 3.855 6 H 0.042 0.958 7 C -0.150 4.150 8 N -0.705 5.705 9 C 0.501 3.499 10 O -0.595 6.595 11 C -0.124 4.124 12 C -0.100 4.100 13 C 0.060 3.940 14 O -0.329 6.329 15 C 0.066 3.934 16 C -0.126 4.126 17 C -0.123 4.123 18 C 0.047 3.953 19 N -0.477 5.477 20 C 0.005 3.995 21 N -0.732 5.732 22 C -0.221 4.221 23 H 0.072 0.928 24 C -0.082 4.082 25 N -0.970 5.970 26 Si 0.960 3.040 27 H -0.264 1.264 28 H -0.294 1.294 29 H -0.303 1.303 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.414 0.586 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.150 0.850 46 H 0.174 0.826 47 H 0.184 0.816 48 H 0.173 0.827 49 H 0.369 0.631 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 18.279 -17.671 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.065 0.935 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.060 0.940 7 C -0.209 4.209 8 N -0.357 5.357 9 C 0.289 3.711 10 O -0.475 6.475 11 C -0.164 4.164 12 C -0.138 4.138 13 C -0.014 4.014 14 O -0.242 6.242 15 C 0.018 3.982 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.110 4.110 19 N -0.187 5.187 20 C -0.153 4.153 21 N -0.372 5.372 22 C -0.353 4.353 23 H 0.090 0.910 24 C -0.274 4.274 25 N -0.622 5.622 26 Si 0.791 3.209 27 H -0.188 1.188 28 H -0.221 1.221 29 H -0.231 1.231 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.168 0.832 46 H 0.192 0.808 47 H 0.201 0.799 48 H 0.190 0.810 49 H 0.200 0.800 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.613 18.343 -17.506 26.779 hybrid contribution 0.397 -0.973 1.752 2.043 sum 9.009 17.370 -15.754 25.121 Atomic orbital electron populations 1.22312 0.97793 1.00750 1.00762 1.20547 0.92570 0.95441 0.85950 0.93472 1.22065 0.92863 1.02025 0.98576 1.20771 0.95471 0.81704 0.98035 0.93999 1.22072 1.00288 1.00124 0.98374 1.45856 1.16511 1.11234 1.62139 1.21290 0.81657 0.91488 0.76637 1.90727 1.52921 1.58695 1.45163 1.21517 0.97016 0.91670 1.06163 1.21123 0.96290 0.94517 1.01917 1.22989 0.80882 0.97104 1.00475 1.86074 1.33467 1.26119 1.78507 1.20325 0.94987 0.85259 0.97597 1.21348 0.93698 0.99018 1.01221 1.22386 1.02438 0.91624 0.97813 1.23212 0.89592 1.01547 0.96655 1.67557 1.15078 1.20325 1.15743 1.23182 1.01626 0.88363 1.02083 1.42635 1.78146 1.10085 1.06364 1.19548 1.33543 0.93829 0.88376 0.90991 1.25453 1.03774 0.96861 1.01272 1.69810 1.53306 1.10167 1.28934 0.85243 0.76395 0.78501 0.80776 1.18815 1.22095 1.23058 0.94163 0.95186 0.90362 0.87368 0.91043 0.89768 0.94494 0.91669 0.74841 0.84533 0.86426 0.93251 0.91592 0.88926 0.90117 0.83248 0.80821 0.79944 0.80991 0.79995 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 9.49 71.98 0.68 -4.27 16 2 C 0.16 5.76 2.84 44.99 0.13 5.89 16 3 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16 4 C -0.12 -3.19 4.29 30.59 0.13 -3.05 16 5 C 0.15 4.50 2.52 44.99 0.11 4.61 16 6 H 0.04 1.86 7.05 -2.39 -0.02 1.85 16 7 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 8 N -0.71 -18.00 4.45 -442.54 -1.97 -19.97 16 9 C 0.50 15.04 7.79 87.66 0.68 15.72 16 10 O -0.59 -25.34 15.64 -3.04 -0.05 -25.39 16 11 C -0.12 -2.27 5.70 29.85 0.17 -2.09 16 12 C -0.10 -2.26 4.87 30.59 0.15 -2.12 16 13 C 0.06 1.01 4.75 71.98 0.34 1.35 16 14 O -0.33 -7.43 10.15 -92.47 -0.94 -8.37 16 15 C 0.07 1.34 6.71 22.60 0.15 1.49 16 16 C -0.13 -2.18 10.13 22.56 0.23 -1.95 16 17 C -0.12 -1.56 10.11 22.35 0.23 -1.34 16 18 C 0.05 0.70 11.18 84.69 0.95 1.64 16 19 N -0.48 -9.46 10.36 -195.44 -2.02 -11.48 16 20 C 0.00 0.09 10.22 84.80 0.87 0.96 16 21 N -0.73 -36.08 4.49 -322.94 -1.45 -37.53 16 22 C -0.22 -12.30 9.93 84.03 0.83 -11.47 16 23 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 24 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 25 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 26 Si 0.96 48.18 29.55 68.60 2.03 50.20 16 27 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 28 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 29 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 30 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 6.97 8.60 -92.70 -0.80 6.18 16 39 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.46 8.10 -2.38 -0.02 1.44 16 42 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 43 H 0.09 1.05 7.68 -2.39 -0.02 1.03 16 44 H 0.08 1.13 7.68 -2.39 -0.02 1.11 16 45 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 47 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 48 H 0.17 2.46 6.32 -2.91 -0.02 2.44 16 49 H 0.37 20.07 7.80 -92.71 -0.72 19.35 16 50 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -83.60 415.15 2.10 -81.51 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -0.59 Total: 34.75 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.80 Total: -2.20 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.16 Total: -130.49 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.99 Total: -33.76 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.20 kcal Total: -83.60 2.10 -81.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146521720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.136 kcal (2) G-P(sol) polarization free energy of solvation -83.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds