Wall clock time and date at job start Tue Mar 31 2020 19:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 O 1.42895 * 109.47205 * 239.99755 * 2 1 3 5 5 C 1.35726 * 117.00304 * 274.74954 * 4 2 1 6 6 C 1.39232 * 120.37911 * 5.36751 * 5 4 2 7 7 C 1.38318 * 118.44329 * 179.97438 * 6 5 4 8 8 C 1.39466 * 119.13647 * 0.02562 * 7 6 5 9 9 C 1.47926 * 119.66062 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99981 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99943 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99706 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47637 * 325.00121 * 12 11 9 14 14 C 1.53004 * 109.47002 * 85.00407 * 12 11 9 15 15 C 1.53003 * 109.47162 * 205.00065 * 12 11 9 16 16 C 1.52997 * 109.46771 * 65.00170 * 15 12 11 17 17 H 1.09002 * 109.47179 * 55.00363 * 16 15 12 18 18 C 1.53003 * 109.46956 * 174.99927 * 16 15 12 19 19 N 1.46500 * 109.47431 * 294.99840 * 16 15 12 20 20 C 1.36941 * 119.99926 * 154.99694 * 19 16 15 21 21 H 1.08000 * 120.00093 * 0.02562 * 20 19 16 22 22 C 1.38810 * 119.99815 * 180.02562 * 20 19 16 23 23 N 1.31623 * 120.00114 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47612 * 89.99283 * 24 22 20 26 26 H 1.48501 * 109.47197 * 210.00067 * 24 22 20 27 27 H 1.48506 * 109.46775 * 329.99232 * 24 22 20 28 28 N 1.32798 * 120.68302 * 359.97438 * 8 7 6 29 29 C 1.31380 * 121.69581 * 359.73483 * 28 8 7 30 30 H 1.08998 * 109.47200 * 60.00679 * 1 2 3 31 31 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47315 * 299.99785 * 1 2 3 33 33 H 1.09003 * 109.47048 * 120.00046 * 2 1 3 34 34 H 1.08996 * 109.46913 * 59.99968 * 3 2 1 35 35 H 1.09000 * 109.46744 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.46591 * 299.99694 * 3 2 1 37 37 H 1.07997 * 120.78047 * 0.02562 * 6 5 4 38 38 H 1.08007 * 120.43621 * 179.97438 * 7 6 5 39 39 H 0.96994 * 119.99968 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47356 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47233 * 300.00082 * 14 12 11 42 42 H 1.09001 * 109.47008 * 60.00128 * 14 12 11 43 43 H 1.08999 * 109.47224 * 185.00180 * 15 12 11 44 44 H 1.09000 * 109.47040 * 305.00883 * 15 12 11 45 45 H 1.09002 * 109.46820 * 60.00216 * 18 16 15 46 46 H 1.09003 * 109.47091 * 180.02562 * 18 16 15 47 47 H 1.08997 * 109.47518 * 300.00135 * 18 16 15 48 48 H 0.96998 * 120.00031 * 335.00694 * 19 16 15 49 49 H 0.97001 * 120.00205 * 179.97438 * 23 22 20 50 50 H 1.08000 * 119.60046 * 180.25971 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1173 -2.0245 -1.0961 6 6 1.6718 -2.7097 0.0311 7 6 1.8039 -4.0863 0.0603 8 6 2.3757 -4.7369 -1.0328 9 6 2.5221 -6.2088 -1.0141 10 8 2.1454 -6.8448 -0.0492 11 7 3.0732 -6.8446 -2.0670 12 6 3.2187 -8.3022 -2.0482 13 1 3.4388 -8.6324 -1.0330 14 6 1.9175 -8.9508 -2.5247 15 6 4.3631 -8.7125 -2.9772 16 6 5.6840 -8.1668 -2.4309 17 1 5.8178 -8.5017 -1.4023 18 6 6.8418 -8.6804 -3.2892 19 7 5.6603 -6.7025 -2.4686 20 6 6.4450 -5.9826 -1.6076 21 1 7.0816 -6.4944 -0.9010 22 6 6.4221 -4.5952 -1.6430 23 7 5.6467 -3.9715 -2.5044 24 14 7.4930 -3.6131 -0.4690 25 1 8.8141 -3.3599 -1.0980 26 1 6.8338 -2.3181 -0.1633 27 1 7.6823 -4.3809 0.7881 28 7 2.7891 -4.0488 -2.0907 29 6 2.6729 -2.7416 -2.1524 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9562 -0.8900 37 1 1.2325 -2.1790 0.8627 38 1 1.4695 -4.6499 0.9187 39 1 3.3741 -6.3370 -2.8368 40 1 2.0259 -10.0353 -2.5112 41 1 1.1022 -8.6585 -1.8630 42 1 1.6976 -8.6207 -3.5400 43 1 4.4143 -9.7999 -3.0323 44 1 4.1862 -8.3061 -3.9730 45 1 6.7079 -8.3455 -4.3178 46 1 7.7829 -8.2920 -2.8998 47 1 6.8595 -9.7699 -3.2612 48 1 5.0887 -6.2429 -3.1034 49 1 5.6304 -3.0019 -2.5289 50 1 3.0167 -2.2164 -3.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146838981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:44 Heat of formation + Delta-G solvation = -27.215766 kcal Electronic energy + Delta-G solvation = -30625.034827 eV Core-core repulsion = 26653.234023 eV Total energy + Delta-G solvation = -3971.800804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.47202 -39.23547 -37.89539 -36.57377 -34.05995 -33.37239 -32.26637 -31.69661 -30.76753 -29.44811 -28.36418 -27.47717 -26.25172 -24.34597 -23.51314 -23.28617 -21.65427 -20.80603 -20.09583 -19.55829 -18.22894 -17.30026 -17.03551 -16.46869 -15.56683 -15.50479 -14.91562 -14.68118 -14.39285 -14.27046 -14.03365 -13.71001 -13.61158 -13.38572 -13.12575 -12.94252 -12.79688 -12.59585 -12.46579 -12.40829 -12.11510 -11.96663 -11.90398 -11.74995 -11.64146 -11.57354 -11.02949 -10.91313 -10.81428 -10.78599 -10.63642 -10.28446 -10.17301 -9.80422 -9.57881 -9.48715 -9.37188 -8.86268 -8.82643 -8.29192 -7.95100 -6.78058 -5.60904 -2.87786 1.27582 1.69588 3.15953 3.44283 3.46630 3.52475 3.54232 3.88853 4.52917 4.59309 4.68018 4.72975 4.85712 4.89590 4.99173 5.09688 5.21125 5.32147 5.40123 5.45685 5.51239 5.52763 5.59069 5.62338 5.68432 5.70514 5.77626 5.89835 5.96202 5.97379 6.05435 6.09948 6.18917 6.21988 6.32467 6.34751 6.37176 6.44873 6.51574 6.64221 6.71004 6.73315 6.94791 7.14555 7.29377 7.47775 7.83014 8.24575 8.51807 8.57188 9.00884 9.65557 10.20904 10.56771 11.57182 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.004380 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.685226 B = 6390.459618 C = 8083.167211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 C -0.148 4.148 4 O -0.303 6.303 5 C 0.089 3.911 6 C -0.188 4.188 7 C -0.083 4.083 8 C 0.048 3.952 9 C 0.586 3.414 10 O -0.566 6.566 11 N -0.676 5.676 12 C 0.148 3.852 13 H 0.082 0.918 14 C -0.162 4.162 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.045 0.955 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.236 4.236 21 H 0.062 0.938 22 C -0.003 4.003 23 N -0.902 5.902 24 Si 0.887 3.113 25 H -0.293 1.293 26 H -0.296 1.296 27 H -0.287 1.287 28 N -0.355 5.355 29 C 0.095 3.905 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.415 0.585 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.033 0.967 48 H 0.381 0.619 49 H 0.249 0.751 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.137 3.133 1.035 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.215 6.215 5 C 0.041 3.959 6 C -0.214 4.214 7 C -0.104 4.104 8 C -0.091 4.091 9 C 0.372 3.628 10 O -0.446 6.446 11 N -0.328 5.328 12 C 0.043 3.957 13 H 0.100 0.900 14 C -0.220 4.220 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.063 0.937 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.367 4.367 21 H 0.080 0.920 22 C -0.200 4.200 23 N -0.549 5.549 24 Si 0.720 3.280 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.213 1.213 28 N -0.065 5.065 29 C -0.068 4.068 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.217 0.783 49 H 0.059 0.941 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.876 2.395 0.972 11.179 hybrid contribution 0.482 1.587 1.201 2.047 sum -10.395 3.981 2.173 11.341 Atomic orbital electron populations 1.22378 0.95102 1.03141 1.03020 1.22449 0.94243 0.93826 0.87770 1.21845 1.02394 0.93443 1.02847 1.86095 1.80852 1.16186 1.38364 1.20523 0.96253 0.83252 0.95865 1.21507 1.06116 0.95008 0.98787 1.21815 0.96273 0.93604 0.98698 1.20996 1.00955 0.94675 0.92426 1.17596 0.77120 0.85529 0.82530 1.90681 1.52408 1.67111 1.34388 1.45812 1.59590 1.06947 1.20416 1.20840 0.93864 0.80471 1.00557 0.89955 1.22207 0.98349 1.00204 1.01265 1.22208 0.95459 1.00549 0.98983 1.20261 0.90919 0.86228 0.96672 0.93665 1.22428 1.01134 0.98039 1.00715 1.42438 1.51324 0.98701 1.43328 1.19046 1.17281 0.88602 1.11782 0.91976 1.24565 0.99883 0.96289 0.99281 1.69671 1.40616 1.07176 1.37441 0.86493 0.80384 0.80025 0.81124 1.22092 1.22219 1.21284 1.67706 1.07081 1.07100 1.24625 1.22154 0.97977 0.89136 0.97487 0.91371 0.91783 0.91133 0.90931 0.90682 0.91491 0.91417 0.84634 0.84229 0.74485 0.92158 0.92445 0.92759 0.90898 0.91698 0.93635 0.92967 0.94751 0.78333 0.94055 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.19 37.15 0.34 -1.29 16 2 C 0.07 0.82 2.85 -26.73 -0.08 0.74 16 3 C -0.15 -1.36 9.56 37.16 0.36 -1.01 16 4 O -0.30 -4.46 9.80 -18.89 -0.19 -4.64 16 5 C 0.09 1.48 6.64 -38.84 -0.26 1.22 16 6 C -0.19 -2.93 8.34 -39.18 -0.33 -3.26 16 7 C -0.08 -1.48 9.62 -39.09 -0.38 -1.86 16 8 C 0.05 0.97 6.74 -83.02 -0.56 0.41 16 9 C 0.59 12.42 7.77 -12.29 -0.10 12.32 16 10 O -0.57 -12.79 15.98 5.32 0.09 -12.71 16 11 N -0.68 -13.09 3.79 -54.72 -0.21 -13.29 16 12 C 0.15 2.50 2.57 -67.93 -0.17 2.32 16 13 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 14 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 15 C -0.13 -2.09 4.43 -26.73 -0.12 -2.21 16 16 C 0.17 3.26 2.89 -67.93 -0.20 3.07 16 17 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 18 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 19 N -0.71 -16.64 3.84 -53.42 -0.21 -16.85 16 20 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 21 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.90 -24.25 11.97 55.49 0.66 -23.59 16 24 Si 0.89 22.48 29.55 -169.99 -5.02 17.45 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 N -0.35 -7.21 8.50 -9.68 -0.08 -7.29 16 29 C 0.10 1.77 11.09 -17.37 -0.19 1.57 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 6.97 -51.93 -0.36 0.26 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.80 6.32 -51.93 -0.33 0.48 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.14 1.69 5.59 -52.49 -0.29 1.39 16 38 H 0.14 2.34 7.63 -52.48 -0.40 1.94 16 39 H 0.42 8.39 5.82 -40.82 -0.24 8.16 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.38 9.18 5.70 -40.82 -0.23 8.95 16 49 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 50 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 404.58 15.07 6.10 6.10 Total: -1.00 -29.96 404.58 -8.21 -38.16 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -8.13 Total: 15.71 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.22 Total: 0.94 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.17 Total: -61.02 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.10 Total: -17.35 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.96 -8.21 -38.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146838981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.947 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds